RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 FASNP49327 2511 aaKnown RBP12□□□□□ -0.49
CCDC88B-210ENST00000494566 LRRC75A-AS1Q8N1F1 130 aa12□□□□□ -0.49
CCDC88B-210ENST00000494566 TMEM263Q8WUH6 116 aaKnown RBP12□□□□□ -0.49
CCDC88B-210ENST00000494566 TNFRSF18Q9Y5U5 241 aa12□□□□□ -0.49
CCDC88B-210ENST00000494566 LEPROTO15243 131 aa11.99□□□□□ -0.49
CCDC88B-210ENST00000494566 CRLF1O75462 422 aa11.99□□□□□ -0.49
CCDC88B-210ENST00000494566 TRIAP1O43715 76 aa11.98□□□□□ -0.49
CCDC88B-210ENST00000494566 UNC79Q9P2D8 2635 aa11.98□□□□□ -0.49
CCDC88B-210ENST00000494566 NSUN5P1Q3KNT7 163 aa11.98□□□□□ -0.49
CCDC88B-210ENST00000494566 ODF3L2Q3SX64 289 aa11.97□□□□□ -0.49
CCDC88B-210ENST00000494566 NDUFA12Q9UI09 145 aa11.97□□□□□ -0.49
CCDC88B-210ENST00000494566 GCN1Q92616 2671 aaKnown RBP11.97□□□□□ -0.49
CCDC88B-210ENST00000494566 LYRM7Q5U5X0 104 aa11.97□□□□□ -0.49
CCDC88B-210ENST00000494566 HECTD1Q9ULT8 2610 aa11.96□□□□□ -0.49
CCDC88B-210ENST00000494566 M0R2P5 195 aa11.96□□□□□ -0.49
CCDC88B-210ENST00000494566 LINC00467Q9BRT7 94 aa11.96□□□□□ -0.49
CCDC88B-210ENST00000494566 FAM104AQ969W3 186 aa11.96□□□□□ -0.5
CCDC88B-210ENST00000494566 RHOHQ15669 191 aa11.95□□□□□ -0.5
CCDC88B-210ENST00000494566 CITED2Q99967 270 aaPredicted RBP11.95□□□□□ -0.5
CCDC88B-210ENST00000494566 TRAV4A0A0B4J268 109 aa11.95□□□□□ -0.5
CCDC88B-210ENST00000494566 ZNF415Q09FC8 603 aa11.95□□□□□ -0.5
CCDC88B-210ENST00000494566 IGKV3OR2-268A0A0C4DH90 116 aa11.94□□□□□ -0.5
CCDC88B-210ENST00000494566 SCGB1A1P11684 91 aa11.94□□□□□ -0.5
CCDC88B-210ENST00000494566 WFDC10AQ9H1F0 79 aa11.94□□□□□ -0.5
CCDC88B-210ENST00000494566 C11orf72Q8NBR9 251 aa11.94□□□□□ -0.5
CCDC88B-210ENST00000494566 ANAPC13Q9BS18 74 aa11.93□□□□□ -0.5
CCDC88B-210ENST00000494566 CDKN2A-AS1Q9UH64 79 aa11.93□□□□□ -0.5
CCDC88B-210ENST00000494566 CCL24O00175 119 aa11.93□□□□□ -0.5
CCDC88B-210ENST00000494566 LINC01620Q4KN68 170 aa11.93□□□□□ -0.5
CCDC88B-210ENST00000494566 A8MTW9 85 aa11.93□□□□□ -0.5
CCDC88B-210ENST00000494566 TTC32Q5I0X7 151 aa11.93□□□□□ -0.5
CCDC88B-210ENST00000494566 SS18L2Q9UHA2 77 aa11.93□□□□□ -0.5
CCDC88B-210ENST00000494566 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.92□□□□□ -0.5
CCDC88B-210ENST00000494566 C3orf56Q8N813 242 aa11.92□□□□□ -0.5
CCDC88B-210ENST00000494566 TRAV13-1A0A0B4J241 112 aa11.92□□□□□ -0.5
CCDC88B-210ENST00000494566 INSP01308 110 aa11.92□□□□□ -0.5
CCDC88B-210ENST00000494566 DGAT2L7PQ6IED9 249 aa11.92□□□□□ -0.5
CCDC88B-210ENST00000494566 STHQ8IWL8 128 aa11.92□□□□□ -0.5
CCDC88B-210ENST00000494566 ATP6V0E2Q8NHE4 81 aa11.92□□□□□ -0.5
CCDC88B-210ENST00000494566 YAE1D1Q9NRH1 226 aa11.92□□□□□ -0.5
CCDC88B-210ENST00000494566 VWFP04275 2813 aa11.92□□□□□ -0.5
CCDC88B-210ENST00000494566 COX6A2Q02221 97 aa11.91□□□□□ -0.5
CCDC88B-210ENST00000494566 C2orf82Q6UX34 121 aa11.91□□□□□ -0.5
CCDC88B-210ENST00000494566 C1orf158Q8N1D5 194 aa11.9□□□□□ -0.5
CCDC88B-210ENST00000494566 RPL13AP40429 203 aaKnown RBP11.9□□□□□ -0.51
CCDC88B-210ENST00000494566 TEX29Q8N6K0 151 aa11.9□□□□□ -0.51
CCDC88B-210ENST00000494566 LITAFQ99732 161 aa11.9□□□□□ -0.51
CCDC88B-210ENST00000494566 TRGV1A0A0A0MS02 117 aa11.89□□□□□ -0.51
CCDC88B-210ENST00000494566 B5MCH6 92 aa11.89□□□□□ -0.51
CCDC88B-210ENST00000494566 ATXN8Q156A1 80 aa11.89□□□□□ -0.51
CCDC88B-210ENST00000494566 CHCHD7Q9BUK0 85 aa11.89□□□□□ -0.51
CCDC88B-210ENST00000494566 ICOSQ9Y6W8 199 aa11.89□□□□□ -0.51
CCDC88B-210ENST00000494566 KRTAP1-1Q07627 177 aa11.88□□□□□ -0.51
CCDC88B-210ENST00000494566 ZFAND6Q6FIF0 208 aa11.88□□□□□ -0.51
CCDC88B-210ENST00000494566 LINC01006Q8NI28 216 aa11.88□□□□□ -0.51
CCDC88B-210ENST00000494566 SMR3AQ99954 134 aa11.88□□□□□ -0.51
CCDC88B-210ENST00000494566 HIVEP2P31629 2446 aa11.88□□□□□ -0.51
CCDC88B-210ENST00000494566 IGHV1-58A0A0C4DH39 117 aa11.87□□□□□ -0.51
CCDC88B-210ENST00000494566 LINC00694P0DN24 101 aa11.87□□□□□ -0.51
CCDC88B-210ENST00000494566 SNCGO76070 127 aa11.87□□□□□ -0.51
CCDC88B-210ENST00000494566 PLA2G2AP14555 144 aa11.87□□□□□ -0.51
CCDC88B-210ENST00000494566 Q6ZTI0 123 aa11.87□□□□□ -0.51
CCDC88B-210ENST00000494566 UBE2D4Q9Y2X8 147 aa11.87□□□□□ -0.51
CCDC88B-210ENST00000494566 TMEM86BQ8N661 226 aa11.86□□□□□ -0.51
CCDC88B-210ENST00000494566 VSIG2Q96IQ7 327 aa11.86□□□□□ -0.51
CCDC88B-210ENST00000494566 TRAV8-4A0A0B4J246 113 aa11.86□□□□□ -0.51
CCDC88B-210ENST00000494566 A0A0B4J2C4 111 aa11.86□□□□□ -0.51
CCDC88B-210ENST00000494566 H7C423 109 aa11.86□□□□□ -0.51
CCDC88B-210ENST00000494566 RPL35AP18077 110 aaKnown RBP11.86□□□□□ -0.51
CCDC88B-210ENST00000494566 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.85□□□□□ -0.51
CCDC88B-210ENST00000494566 SBSPONQ8IVN8 264 aa11.85□□□□□ -0.51
CCDC88B-210ENST00000494566 C15orf53Q8NAA6 179 aa11.85□□□□□ -0.51
CCDC88B-210ENST00000494566 Q9H8V8 135 aa11.85□□□□□ -0.51
CCDC88B-210ENST00000494566 MRPS36P82909 103 aaKnown RBP11.85□□□□□ -0.51
CCDC88B-210ENST00000494566 OTOGQ6ZRI0 2925 aa11.85□□□□□ -0.51
CCDC88B-210ENST00000494566 GAGE2BQ13066 116 aa11.84□□□□□ -0.51
CCDC88B-210ENST00000494566 GAGE2EQ4V326 116 aa11.84□□□□□ -0.51
CCDC88B-210ENST00000494566 UBE2WQ96B02 151 aa11.84□□□□□ -0.51
CCDC88B-210ENST00000494566 GAGE2DQ9UEU5 116 aa11.84□□□□□ -0.51
CCDC88B-210ENST00000494566 TMEM101Q96IK0 257 aa11.83□□□□□ -0.52
CCDC88B-210ENST00000494566 RS1O15537 224 aa11.83□□□□□ -0.52
CCDC88B-210ENST00000494566 NOP10Q9NPE3 64 aaKnown RBP11.83□□□□□ -0.52
CCDC88B-210ENST00000494566 GAGE12JA6NER3 117 aa11.82□□□□□ -0.52
CCDC88B-210ENST00000494566 GAGE4Q13068 117 aa11.82□□□□□ -0.52
CCDC88B-210ENST00000494566 GAGE5Q13069 117 aa11.82□□□□□ -0.52
CCDC88B-210ENST00000494566 BEAN1Q3B7T3 259 aa11.82□□□□□ -0.52
CCDC88B-210ENST00000494566 MEIG1Q5JSS6 88 aa11.82□□□□□ -0.52
CCDC88B-210ENST00000494566 EDA2RQ9HAV5 297 aa11.82□□□□□ -0.52
CCDC88B-210ENST00000494566 PYGO1Q9Y3Y4 419 aa11.82□□□□□ -0.52
CCDC88B-210ENST00000494566 MIAQ16674 131 aa11.82□□□□□ -0.52
CCDC88B-210ENST00000494566 CCDC179H3BU77 68 aa11.81□□□□□ -0.52
CCDC88B-210ENST00000494566 PIK3CD-AS1Q5SR53 167 aa11.81□□□□□ -0.52
CCDC88B-210ENST00000494566 TOMM7Q9P0U1 55 aa11.81□□□□□ -0.52
CCDC88B-210ENST00000494566 TRBV10-2A0A0K0K1G8 114 aa11.8□□□□□ -0.52
CCDC88B-210ENST00000494566 TENM1Q9UKZ4 2725 aa11.8□□□□□ -0.52
CCDC88B-210ENST00000494566 GIG44P09565 113 aaPredicted RBP11.8□□□□□ -0.52
CCDC88B-210ENST00000494566 LOC100131303A0A0U1RQF7 123 aa11.8□□□□□ -0.52
CCDC88B-210ENST00000494566 C11orf68Q9H3H3 251 aaKnown RBP11.8□□□□□ -0.52
CCDC88B-210ENST00000494566 COX6CP09669 75 aa11.79□□□□□ -0.52
CCDC88B-210ENST00000494566 KMT2BQ9UMN6 2715 aaPredicted RBP11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms