RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 SAMD5Q5TGI4 173 aa15.01□□□□□ -0.01
CCDC88B-208ENST00000492980 NTM-AS1Q6ZSK4 140 aa15.01□□□□□ -0.01
CCDC88B-208ENST00000492980 K7EP34 96 aa15□□□□□ -0.01
CCDC88B-208ENST00000492980 SRSF9Q13242 221 aaKnown RBP eCLIP14.99□□□□□ -0.01
CCDC88B-208ENST00000492980 CITED1Q99966 193 aa14.99□□□□□ -0.01
CCDC88B-208ENST00000492980 GTF2H5Q6ZYL4 71 aa14.99□□□□□ -0.01
CCDC88B-208ENST00000492980 SPANXB1Q9NS25 103 aaPredicted RBP14.99□□□□□ -0.01
CCDC88B-208ENST00000492980 TRBV6-4A0A1B0GX49 114 aa14.98□□□□□ -0.01
CCDC88B-208ENST00000492980 LINC00694P0DN24 101 aa14.98□□□□□ -0.01
CCDC88B-208ENST00000492980 UBE2D1P51668 147 aa14.98□□□□□ -0.01
CCDC88B-208ENST00000492980 SBSPONQ8IVN8 264 aa14.98□□□□□ -0.01
CCDC88B-208ENST00000492980 FABP2P12104 132 aa14.97□□□□□ -0.01
CCDC88B-208ENST00000492980 IGLL5B9A064 214 aa14.96□□□□□ -0.01
CCDC88B-208ENST00000492980 IGHV3-30-3P0DP02 117 aa14.96□□□□□ -0.01
CCDC88B-208ENST00000492980 DGAT2L7PQ6IED9 249 aa14.96□□□□□ -0.01
CCDC88B-208ENST00000492980 TRGV4A0A0C4DH28 118 aa14.96□□□□□ -0.01
CCDC88B-208ENST00000492980 LOC100131303A0A0U1RQF7 123 aa14.96□□□□□ -0.01
CCDC88B-208ENST00000492980 SPCS1Q9Y6A9 102 aa14.96□□□□□ -0.01
CCDC88B-208ENST00000492980 VWFP04275 2813 aa14.95□□□□□ -0.02
CCDC88B-208ENST00000492980 TMEM238LA0A1B0GVL6 79 aa14.95□□□□□ -0.02
CCDC88B-208ENST00000492980 A6NJY4 79 aa14.95□□□□□ -0.02
CCDC88B-208ENST00000492980 FHL2Q14192 279 aa14.95□□□□□ -0.02
CCDC88B-208ENST00000492980 TRAV8-3A0A0A6YYJ7 113 aa14.94□□□□□ -0.02
CCDC88B-208ENST00000492980 IGHV1-58A0A0C4DH39 117 aa14.94□□□□□ -0.02
CCDC88B-208ENST00000492980 IGHV3-30P01768 117 aa14.94□□□□□ -0.02
CCDC88B-208ENST00000492980 IGHV3-30-5P0DP03 117 aa14.94□□□□□ -0.02
CCDC88B-208ENST00000492980 GTSF1LQ9H1H1 148 aa14.94□□□□□ -0.02
CCDC88B-208ENST00000492980 CSDC2Q9Y534 153 aaKnown RBP14.94□□□□□ -0.02
CCDC88B-208ENST00000492980 X6R8D5 127 aa14.94□□□□□ -0.02
CCDC88B-208ENST00000492980 TENM1Q9UKZ4 2725 aa14.94□□□□□ -0.02
CCDC88B-208ENST00000492980 C10orf126Q8N4M7 172 aa14.93□□□□□ -0.02
CCDC88B-208ENST00000492980 LINC00612Q8N6U2 182 aa14.93□□□□□ -0.02
CCDC88B-208ENST00000492980 KIR2DL5BQ8NHK3 375 aa14.93□□□□□ -0.02
CCDC88B-208ENST00000492980 GEMIN7Q9H840 131 aaKnown RBP14.93□□□□□ -0.02
CCDC88B-208ENST00000492980 TIRAPP58753 221 aa14.92□□□□□ -0.02
CCDC88B-208ENST00000492980 VSIG2Q96IQ7 327 aa14.92□□□□□ -0.02
CCDC88B-208ENST00000492980 IGLV5-45A0A087WSX0 123 aa14.91□□□□□ -0.02
CCDC88B-208ENST00000492980 SPINK8P0C7L1 97 aa14.91□□□□□ -0.02
CCDC88B-208ENST00000492980 TMEM243Q9BU79 118 aa14.9□□□□□ -0.02
CCDC88B-208ENST00000492980 CDKN2A-AS1Q9UH64 79 aa14.9□□□□□ -0.02
CCDC88B-208ENST00000492980 A0A0J9YXY3 114 aa14.89□□□□□ -0.03
CCDC88B-208ENST00000492980 SMIM9A6NGZ8 99 aa14.89□□□□□ -0.03
CCDC88B-208ENST00000492980 DEFB130BP0DP73 79 aa14.89□□□□□ -0.03
CCDC88B-208ENST00000492980 DEFB130AP0DP74 79 aa14.89□□□□□ -0.03
CCDC88B-208ENST00000492980 SMAGPQ0VAQ4 97 aa14.89□□□□□ -0.03
CCDC88B-208ENST00000492980 FAM19A3Q7Z5A8 133 aa14.89□□□□□ -0.03
CCDC88B-208ENST00000492980 CDC42SE2Q9NRR3 84 aa14.89□□□□□ -0.03
CCDC88B-208ENST00000492980 COX6A2Q02221 97 aa14.88□□□□□ -0.03
CCDC88B-208ENST00000492980 LINC00242Q5T6M2 205 aa14.88□□□□□ -0.03
CCDC88B-208ENST00000492980 A8MZ25 164 aa14.87□□□□□ -0.03
CCDC88B-208ENST00000492980 UBE2L6O14933 153 aa14.87□□□□□ -0.03
CCDC88B-208ENST00000492980 HERVK_113P63121 156 aa14.86□□□□□ -0.03
CCDC88B-208ENST00000492980 NDUFA12Q9UI09 145 aa14.86□□□□□ -0.03
CCDC88B-208ENST00000492980 TMEM238C9JI98 176 aa14.86□□□□□ -0.03
CCDC88B-208ENST00000492980 WFDC9Q8NEX5 89 aa14.86□□□□□ -0.03
CCDC88B-208ENST00000492980 PGPEP1Q9NXJ5 209 aa14.86□□□□□ -0.03
CCDC88B-208ENST00000492980 H7C423 109 aa14.85□□□□□ -0.03
CCDC88B-208ENST00000492980 APOMO95445 188 aa14.85□□□□□ -0.03
CCDC88B-208ENST00000492980 LITAFQ99732 161 aa14.84□□□□□ -0.03
CCDC88B-208ENST00000492980 TEP1Q99973 2627 aaKnown RBP14.84□□□□□ -0.03
CCDC88B-208ENST00000492980 ZFAND6Q6FIF0 208 aa14.84□□□□□ -0.03
CCDC88B-208ENST00000492980 TMEM101Q96IK0 257 aa14.84□□□□□ -0.03
CCDC88B-208ENST00000492980 TRAV13-1A0A0B4J241 112 aa14.83□□□□□ -0.04
CCDC88B-208ENST00000492980 CFC1BP0CG36 223 aa14.83□□□□□ -0.04
CCDC88B-208ENST00000492980 CFC1P0CG37 223 aa14.83□□□□□ -0.04
CCDC88B-208ENST00000492980 APOC4P55056 127 aa14.83□□□□□ -0.04
CCDC88B-208ENST00000492980 DEFB135Q30KP9 77 aa14.83□□□□□ -0.04
CCDC88B-208ENST00000492980 ATRQ13535 2644 aa14.83□□□□□ -0.04
CCDC88B-208ENST00000492980 TRBV6-8A0A0A6YYG3 113 aa14.83□□□□□ -0.04
CCDC88B-208ENST00000492980 TSPAN13O95857 204 aa14.82□□□□□ -0.04
CCDC88B-208ENST00000492980 MUSTN1Q8IVN3 82 aa14.81□□□□□ -0.04
CCDC88B-208ENST00000492980 IGLV5-39A0A0G2JS06 123 aa14.81□□□□□ -0.04
CCDC88B-208ENST00000492980 A4D1N5 150 aa14.81□□□□□ -0.04
CCDC88B-208ENST00000492980 WIPF1O43516 503 aa14.81□□□□□ -0.04
CCDC88B-208ENST00000492980 FAM222AQ5U5X8 452 aa14.81□□□□□ -0.04
CCDC88B-208ENST00000492980 GAGE6Q13070 117 aa14.8□□□□□ -0.04
CCDC88B-208ENST00000492980 LYRM9A8MSI8 78 aa14.8□□□□□ -0.04
CCDC88B-208ENST00000492980 RPL24P83731 157 aaKnown RBP14.79□□□□□ -0.04
CCDC88B-208ENST00000492980 SMIM1B2RUZ4 78 aa14.78□□□□□ -0.04
CCDC88B-208ENST00000492980 NDUFA1O15239 70 aa14.78□□□□□ -0.04
CCDC88B-208ENST00000492980 EIF4EBP3O60516 100 aaPredicted RBP14.78□□□□□ -0.04
CCDC88B-208ENST00000492980 GYPEP15421 78 aa14.78□□□□□ -0.04
CCDC88B-208ENST00000492980 OCIAD2Q56VL3 154 aa14.78□□□□□ -0.04
CCDC88B-208ENST00000492980 ADAMTSL4-AS1Q5T5F5 129 aa14.78□□□□□ -0.04
CCDC88B-208ENST00000492980 SPANXDQ9BXN6 97 aa14.78□□□□□ -0.04
CCDC88B-208ENST00000492980 SPANXCQ9NY87 97 aa14.78□□□□□ -0.04
CCDC88B-208ENST00000492980 IGHV4-28A0A0C4DH34 117 aa14.77□□□□□ -0.05
CCDC88B-208ENST00000492980 CHCHD5Q9BSY4 110 aa14.77□□□□□ -0.05
CCDC88B-208ENST00000492980 PRO0255Q9UI72 69 aa14.77□□□□□ -0.05
CCDC88B-208ENST00000492980 F5H768 121 aa14.76□□□□□ -0.05
CCDC88B-208ENST00000492980 DEFB4AO15263 64 aa14.76□□□□□ -0.05
CCDC88B-208ENST00000492980 PRO1854Q9UHT4 67 aa14.76□□□□□ -0.05
CCDC88B-208ENST00000492980 ATP6V0E2Q8NHE4 81 aa14.75□□□□□ -0.05
CCDC88B-208ENST00000492980 F8P00451 2351 aa14.75□□□□□ -0.05
CCDC88B-208ENST00000492980 IGLV4-60A0A075B6I1 120 aa14.75□□□□□ -0.05
CCDC88B-208ENST00000492980 H3BMG7 143 aa14.75□□□□□ -0.05
CCDC88B-208ENST00000492980 A0A0B4J2C4 111 aa14.74□□□□□ -0.05
CCDC88B-208ENST00000492980 TIMM17BO60830 172 aa14.74□□□□□ -0.05
CCDC88B-208ENST00000492980 MIAQ16674 131 aa14.74□□□□□ -0.05
CCDC88B-208ENST00000492980 TRRAPQ9Y4A5 3859 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms