RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 SPANXB1Q9NS25 103 aaPredicted RBP3.7□□□□□ -1.82
CCDC39-204ENST00000476379 SLPIP03973 132 aa3.7□□□□□ -1.82
CCDC39-204ENST00000476379 CFC1BP0CG36 223 aa3.7□□□□□ -1.82
CCDC39-204ENST00000476379 CFC1P0CG37 223 aa3.7□□□□□ -1.82
CCDC39-204ENST00000476379 FOXI1Q12951 378 aa3.7□□□□□ -1.82
CCDC39-204ENST00000476379 CDKN2A-AS1Q9UH64 79 aa3.7□□□□□ -1.82
CCDC39-204ENST00000476379 F8W1H4 67 aa3.7□□□□□ -1.82
CCDC39-204ENST00000476379 GATA3P23771 443 aa3.7□□□□□ -1.82
CCDC39-204ENST00000476379 Q6ZTI0 123 aa3.7□□□□□ -1.82
CCDC39-204ENST00000476379 IGKV3D-7A0A0C4DH55 119 aa3.7□□□□□ -1.82
CCDC39-204ENST00000476379 INS-IGF2F8WCM5 200 aa3.7□□□□□ -1.82
CCDC39-204ENST00000476379 IGHV3-30-3P0DP02 117 aa3.7□□□□□ -1.82
CCDC39-204ENST00000476379 CRYBA4P53673 196 aa3.7□□□□□ -1.82
CCDC39-204ENST00000476379 SEC61GP60059 68 aa3.7□□□□□ -1.82
CCDC39-204ENST00000476379 NDUFA11Q86Y39 141 aa3.7□□□□□ -1.82
CCDC39-204ENST00000476379 C8orf31Q8N9H6 132 aa3.7□□□□□ -1.82
CCDC39-204ENST00000476379 MRPL53Q96EL3 112 aaKnown RBP3.7□□□□□ -1.82
CCDC39-204ENST00000476379 LINC00467Q9BRT7 94 aa3.7□□□□□ -1.82
CCDC39-204ENST00000476379 STAB2Q8WWQ8 2551 aa3.69□□□□□ -1.82
CCDC39-204ENST00000476379 OOSP1A8MZH6 123 aa3.69□□□□□ -1.82
CCDC39-204ENST00000476379 IGHV4-31P0DP07 118 aa3.69□□□□□ -1.82
CCDC39-204ENST00000476379 XGP55808 180 aa3.69□□□□□ -1.82
CCDC39-204ENST00000476379 C9orf47Q6ZRZ4 202 aa3.69□□□□□ -1.82
CCDC39-204ENST00000476379 TOMM6Q96B49 74 aa3.69□□□□□ -1.82
CCDC39-204ENST00000476379 TMEM141Q96I45 108 aa3.69□□□□□ -1.82
CCDC39-204ENST00000476379 USMG5Q96IX5 58 aa3.69□□□□□ -1.82
CCDC39-204ENST00000476379 C6orf226Q5I0X4 101 aa3.69□□□□□ -1.82
CCDC39-204ENST00000476379 S100A7L2Q5SY68 101 aa3.69□□□□□ -1.82
CCDC39-204ENST00000476379 NEXN-AS1Q8NBZ9 246 aa3.69□□□□□ -1.82
CCDC39-204ENST00000476379 TRGV11A0A075B6L2 103 aa3.69□□□□□ -1.82
CCDC39-204ENST00000476379 ELANEP08246 267 aa3.69□□□□□ -1.82
CCDC39-204ENST00000476379 C5orf47Q569G3 176 aa3.69□□□□□ -1.82
CCDC39-204ENST00000476379 NFE4Q86UQ8 179 aa3.69□□□□□ -1.82
CCDC39-204ENST00000476379 EDA2RQ9HAV5 297 aa3.69□□□□□ -1.82
CCDC39-204ENST00000476379 RPL36AP83881 106 aaKnown RBP3.68□□□□□ -1.82
CCDC39-204ENST00000476379 RPL36ALQ969Q0 106 aaKnown RBP3.68□□□□□ -1.82
CCDC39-204ENST00000476379 TMEM101Q96IK0 257 aa3.68□□□□□ -1.82
CCDC39-204ENST00000476379 C1QTNF4Q9BXJ3 329 aa3.68□□□□□ -1.82
CCDC39-204ENST00000476379 E9PLD3 99 aa3.68□□□□□ -1.82
CCDC39-204ENST00000476379 H3BMM0 161 aa3.68□□□□□ -1.82
CCDC39-204ENST00000476379 Q6ZSN1 163 aa3.68□□□□□ -1.82
CCDC39-204ENST00000476379 PPDPFLQ8WWR9 84 aa3.68□□□□□ -1.82
CCDC39-204ENST00000476379 UBE2WQ96B02 151 aa3.68□□□□□ -1.82
CCDC39-204ENST00000476379 ATXN8Q156A1 80 aa3.68□□□□□ -1.82
CCDC39-204ENST00000476379 PAPPA-AS1Q5QFB9 102 aa3.68□□□□□ -1.82
CCDC39-204ENST00000476379 GPHB5Q86YW7 130 aa3.68□□□□□ -1.82
CCDC39-204ENST00000476379 LINC00482Q8N8I6 264 aa3.68□□□□□ -1.82
CCDC39-204ENST00000476379 RHODO00212 210 aa3.68□□□□□ -1.82
CCDC39-204ENST00000476379 MORN3Q6PF18 240 aaPredicted RBP3.68□□□□□ -1.82
CCDC39-204ENST00000476379 LINC01356Q8N9X3 169 aa3.68□□□□□ -1.82
CCDC39-204ENST00000476379 TRAV4A0A0B4J268 109 aa3.67□□□□□ -1.82
CCDC39-204ENST00000476379 A0A0J9YX75 114 aa3.67□□□□□ -1.82
CCDC39-204ENST00000476379 A0A0U1RQV1 116 aa3.67□□□□□ -1.82
CCDC39-204ENST00000476379 INSP01308 110 aa3.67□□□□□ -1.82
CCDC39-204ENST00000476379 MALP21145 153 aa3.67□□□□□ -1.82
CCDC39-204ENST00000476379 UFSP1Q6NVU6 142 aa3.67□□□□□ -1.82
CCDC39-204ENST00000476379 KRTAP1-3Q8IUG1 177 aa3.67□□□□□ -1.82
CCDC39-204ENST00000476379 CR1P17927 2039 aa3.67□□□□□ -1.82
CCDC39-204ENST00000476379 TRIAP1O43715 76 aa3.67□□□□□ -1.82
CCDC39-204ENST00000476379 IGHG2P01859 326 aa3.67□□□□□ -1.82
CCDC39-204ENST00000476379 ZNF22P17026 224 aaPredicted RBP3.67□□□□□ -1.82
CCDC39-204ENST00000476379 RBMY1CP0DJD4 496 aa3.67□□□□□ -1.82
CCDC39-204ENST00000476379 LINC01620Q4KN68 170 aa3.67□□□□□ -1.82
CCDC39-204ENST00000476379 ADAMTSL4-AS1Q5T5F5 129 aa3.67□□□□□ -1.82
CCDC39-204ENST00000476379 Q8N6K4 173 aa3.67□□□□□ -1.82
CCDC39-204ENST00000476379 POM121L12Q8N7R1 296 aa3.67□□□□□ -1.82
CCDC39-204ENST00000476379 C20orf203Q8NBC4 194 aa3.67□□□□□ -1.82
CCDC39-204ENST00000476379 IGLV4-3A0A075B6K6 122 aa3.66□□□□□ -1.82
CCDC39-204ENST00000476379 A0A0J9YXY3 114 aa3.66□□□□□ -1.82
CCDC39-204ENST00000476379 LINC01619G3V211 115 aa3.66□□□□□ -1.82
CCDC39-204ENST00000476379 TSHBP01222 138 aa3.66□□□□□ -1.82
CCDC39-204ENST00000476379 CRPP02741 224 aa3.66□□□□□ -1.82
CCDC39-204ENST00000476379 PRR3P79522 188 aaKnown RBP3.66□□□□□ -1.82
CCDC39-204ENST00000476379 SPATA3Q8NHX4 192 aa3.66□□□□□ -1.82
CCDC39-204ENST00000476379 PIFOQ8TCI5 191 aa3.66□□□□□ -1.82
CCDC39-204ENST00000476379 TM2D2Q9BX73 214 aa3.66□□□□□ -1.82
CCDC39-204ENST00000476379 U3KQK5 164 aa3.66□□□□□ -1.82
CCDC39-204ENST00000476379 TENM3Q9P273 2699 aa3.66□□□□□ -1.82
CCDC39-204ENST00000476379 M0QY20 66 aa3.66□□□□□ -1.82
CCDC39-204ENST00000476379 LINC00694P0DN24 101 aa3.66□□□□□ -1.82
CCDC39-204ENST00000476379 TEN1Q86WV5 123 aa3.66□□□□□ -1.82
CCDC39-204ENST00000476379 DNHD1Q96M86 4753 aa3.66□□□□□ -1.82
CCDC39-204ENST00000476379 F5H768 121 aa3.66□□□□□ -1.82
CCDC39-204ENST00000476379 WFDC9Q8NEX5 89 aa3.66□□□□□ -1.82
CCDC39-204ENST00000476379 TRBV7-3A0A075B6L6 115 aa3.66□□□□□ -1.82
CCDC39-204ENST00000476379 EIF4EBP3O60516 100 aaPredicted RBP3.66□□□□□ -1.82
CCDC39-204ENST00000476379 NDUFC2O95298 119 aa3.66□□□□□ -1.82
CCDC39-204ENST00000476379 CRYGDP07320 174 aa3.66□□□□□ -1.82
CCDC39-204ENST00000476379 DEFB135Q30KP9 77 aa3.66□□□□□ -1.82
CCDC39-204ENST00000476379 MIR7-3HGQ8N6C7 128 aa3.66□□□□□ -1.82
CCDC39-204ENST00000476379 VPREB3Q9UKI3 123 aa3.66□□□□□ -1.82
CCDC39-204ENST00000476379 ICOSQ9Y6W8 199 aa3.66□□□□□ -1.82
CCDC39-204ENST00000476379 FAM236AA0A1B0GUQ0 79 aa3.65□□□□□ -1.82
CCDC39-204ENST00000476379 FAM236BA0A1B0GV22 79 aa3.65□□□□□ -1.82
CCDC39-204ENST00000476379 ANGP03950 147 aaKnown RBP3.65□□□□□ -1.82
CCDC39-204ENST00000476379 RBMY1A1P0DJD3 496 aaKnown RBP3.65□□□□□ -1.82
CCDC39-204ENST00000476379 RBMY1FQ15415 496 aaKnown RBP3.65□□□□□ -1.82
CCDC39-204ENST00000476379 DCANP1Q8TF63 244 aa3.65□□□□□ -1.82
CCDC39-204ENST00000476379 C14orf132Q9NPU4 83 aa3.65□□□□□ -1.82
CCDC39-204ENST00000476379 IGLV4-69A0A075B6H9 119 aa3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms