RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 J3QQQ9 107 aa8.62□□□□□ -1.03
SYNE1-222ENST00000474655 UBE2D1P51668 147 aa8.62□□□□□ -1.03
SYNE1-222ENST00000474655 FXYD2P54710 66 aa8.62□□□□□ -1.03
SYNE1-222ENST00000474655 SMAGPQ0VAQ4 97 aa8.62□□□□□ -1.03
SYNE1-222ENST00000474655 NBEAL2Q6ZNJ1 2754 aa8.61□□□□□ -1.03
SYNE1-222ENST00000474655 LOC100131303A0A0U1RQF7 123 aa8.61□□□□□ -1.03
SYNE1-222ENST00000474655 GCSHP23434 173 aa8.61□□□□□ -1.03
SYNE1-222ENST00000474655 DEFB135Q30KP9 77 aa8.61□□□□□ -1.03
SYNE1-222ENST00000474655 IGLV5-45A0A087WSX0 123 aa8.61□□□□□ -1.03
SYNE1-222ENST00000474655 DEFB130BP0DP73 79 aa8.61□□□□□ -1.03
SYNE1-222ENST00000474655 DEFB130AP0DP74 79 aa8.61□□□□□ -1.03
SYNE1-222ENST00000474655 TIRAPP58753 221 aa8.61□□□□□ -1.03
SYNE1-222ENST00000474655 RNASE13Q5GAN3 156 aaKnown RBP8.61□□□□□ -1.03
SYNE1-222ENST00000474655 DGAT2L7PQ6IED9 249 aa8.61□□□□□ -1.03
SYNE1-222ENST00000474655 PLEKHB2Q96CS7 222 aa8.61□□□□□ -1.03
SYNE1-222ENST00000474655 BAHCC1Q9P281 2608 aa8.6□□□□□ -1.03
SYNE1-222ENST00000474655 A0A0J9YY99 117 aa8.6□□□□□ -1.03
SYNE1-222ENST00000474655 IGHV4-30-4P0DP06 118 aa8.6□□□□□ -1.03
SYNE1-222ENST00000474655 HIST1H4GQ99525 98 aa8.6□□□□□ -1.03
SYNE1-222ENST00000474655 TMEM243Q9BU79 118 aa8.6□□□□□ -1.03
SYNE1-222ENST00000474655 C9orf118A6NHY6 69 aa8.59□□□□□ -1.03
SYNE1-222ENST00000474655 K7EP13 123 aa8.59□□□□□ -1.03
SYNE1-222ENST00000474655 MIFP14174 115 aa8.59□□□□□ -1.03
SYNE1-222ENST00000474655 EGFEM1PQ0D2K5 195 aa8.59□□□□□ -1.03
SYNE1-222ENST00000474655 FAM222AQ5U5X8 452 aa8.59□□□□□ -1.03
SYNE1-222ENST00000474655 SHISA2Q6UWI4 295 aa8.59□□□□□ -1.03
SYNE1-222ENST00000474655 Q8NAQ8 132 aa8.59□□□□□ -1.03
SYNE1-222ENST00000474655 OR5A1Q8NGJ0 315 aa8.59□□□□□ -1.03
SYNE1-222ENST00000474655 RNF183Q96D59 192 aa8.59□□□□□ -1.03
SYNE1-222ENST00000474655 CDC42SE2Q9NRR3 84 aa8.59□□□□□ -1.03
SYNE1-222ENST00000474655 SPANXB1Q9NS25 103 aaPredicted RBP8.59□□□□□ -1.03
SYNE1-222ENST00000474655 FBN1P35555 2871 aaKnown RBP8.59□□□□□ -1.03
SYNE1-222ENST00000474655 LGALS3P17931 250 aaKnown RBP8.58□□□□□ -1.04
SYNE1-222ENST00000474655 UBE2V1Q13404 147 aa8.58□□□□□ -1.04
SYNE1-222ENST00000474655 SCGB1D4Q6XE38 83 aa8.58□□□□□ -1.04
SYNE1-222ENST00000474655 TRBV6-8A0A0A6YYG3 113 aa8.58□□□□□ -1.04
SYNE1-222ENST00000474655 IGHV4-28A0A0C4DH34 117 aa8.58□□□□□ -1.04
SYNE1-222ENST00000474655 IGHV1-58A0A0C4DH39 117 aa8.58□□□□□ -1.04
SYNE1-222ENST00000474655 A0A1B0GWB2 263 aa8.58□□□□□ -1.04
SYNE1-222ENST00000474655 A8MZ25 164 aa8.58□□□□□ -1.04
SYNE1-222ENST00000474655 SMIM13P0DJ93 91 aa8.58□□□□□ -1.04
SYNE1-222ENST00000474655 IGHV3-30-3P0DP02 117 aa8.58□□□□□ -1.04
SYNE1-222ENST00000474655 PRO0255Q9UI72 69 aa8.58□□□□□ -1.04
SYNE1-222ENST00000474655 PTTG1IPP53801 180 aa8.57□□□□□ -1.04
SYNE1-222ENST00000474655 LINC00242Q5T6M2 205 aa8.57□□□□□ -1.04
SYNE1-222ENST00000474655 C3orf56Q8N813 242 aa8.57□□□□□ -1.04
SYNE1-222ENST00000474655 VSIG2Q96IQ7 327 aa8.57□□□□□ -1.04
SYNE1-222ENST00000474655 CYSRT1A8MQ03 144 aa8.56□□□□□ -1.04
SYNE1-222ENST00000474655 HERVK_113P63121 156 aa8.56□□□□□ -1.04
SYNE1-222ENST00000474655 OXLD1Q5BKU9 147 aa8.56□□□□□ -1.04
SYNE1-222ENST00000474655 PRIMA1Q86XR5 153 aa8.56□□□□□ -1.04
SYNE1-222ENST00000474655 GEMIN7Q9H840 131 aaKnown RBP8.56□□□□□ -1.04
SYNE1-222ENST00000474655 STAB1Q9NY15 2570 aa8.56□□□□□ -1.04
SYNE1-222ENST00000474655 UBE2L6O14933 153 aa8.56□□□□□ -1.04
SYNE1-222ENST00000474655 CCL25O15444 150 aa8.56□□□□□ -1.04
SYNE1-222ENST00000474655 KRTAP10-11P60412 298 aa8.56□□□□□ -1.04
SYNE1-222ENST00000474655 NHP2Q9NX24 153 aaKnown RBP8.56□□□□□ -1.04
SYNE1-222ENST00000474655 CDKN2A-AS1Q9UH64 79 aa8.56□□□□□ -1.04
SYNE1-222ENST00000474655 TRAV8-3A0A0A6YYJ7 113 aa8.55□□□□□ -1.04
SYNE1-222ENST00000474655 GYPEP15421 78 aa8.55□□□□□ -1.04
SYNE1-222ENST00000474655 VAMP3Q15836 100 aa8.55□□□□□ -1.04
SYNE1-222ENST00000474655 AMMECR1LQ6DCA0 310 aa8.55□□□□□ -1.04
SYNE1-222ENST00000474655 TMEM101Q96IK0 257 aa8.55□□□□□ -1.04
SYNE1-222ENST00000474655 IGHV3-64A0A075B6Q5 118 aa8.54□□□□□ -1.04
SYNE1-222ENST00000474655 COX6A2Q02221 97 aa8.54□□□□□ -1.04
SYNE1-222ENST00000474655 SRSF9Q13242 221 aaKnown RBP eCLIP8.54□□□□□ -1.04
SYNE1-222ENST00000474655 C12orf74Q32Q52 190 aa8.54□□□□□ -1.04
SYNE1-222ENST00000474655 C10orf126Q8N4M7 172 aa8.54□□□□□ -1.04
SYNE1-222ENST00000474655 ATP6V0E2Q8NHE4 81 aa8.54□□□□□ -1.04
SYNE1-222ENST00000474655 IGLV5-39A0A0G2JS06 123 aa8.53□□□□□ -1.04
SYNE1-222ENST00000474655 IGHV3-30P01768 117 aa8.53□□□□□ -1.04
SYNE1-222ENST00000474655 IGHV3-30-5P0DP03 117 aa8.53□□□□□ -1.04
SYNE1-222ENST00000474655 PKD1L1Q8TDX9 2849 aa8.53□□□□□ -1.04
SYNE1-222ENST00000474655 TMEM238LA0A1B0GVL6 79 aa8.53□□□□□ -1.04
SYNE1-222ENST00000474655 A6NJY4 79 aa8.53□□□□□ -1.04
SYNE1-222ENST00000474655 H3BUT2 72 aa8.53□□□□□ -1.04
SYNE1-222ENST00000474655 DEFB4AO15263 64 aa8.53□□□□□ -1.04
SYNE1-222ENST00000474655 SPINK8P0C7L1 97 aa8.53□□□□□ -1.04
SYNE1-222ENST00000474655 SPART-AS1P0CW21 52 aa8.53□□□□□ -1.04
SYNE1-222ENST00000474655 DAD1P61803 113 aa8.53□□□□□ -1.04
SYNE1-222ENST00000474655 ZFAND6Q6FIF0 208 aa8.53□□□□□ -1.04
SYNE1-222ENST00000474655 RAB37Q96AX2 223 aa8.53□□□□□ -1.04
SYNE1-222ENST00000474655 CELA1Q9UNI1 258 aa8.53□□□□□ -1.04
SYNE1-222ENST00000474655 A0A0J9YXY3 114 aa8.52□□□□□ -1.05
SYNE1-222ENST00000474655 A0A1W2PPM0 123 aa8.52□□□□□ -1.05
SYNE1-222ENST00000474655 K7ERJ3 54 aa8.52□□□□□ -1.05
SYNE1-222ENST00000474655 PAX4O43316 350 aa8.52□□□□□ -1.05
SYNE1-222ENST00000474655 ATP5G1P05496 136 aa8.52□□□□□ -1.05
SYNE1-222ENST00000474655 A0A1B0GUV1 79 aa8.51□□□□□ -1.05
SYNE1-222ENST00000474655 GAGE6Q13070 117 aa8.51□□□□□ -1.05
SYNE1-222ENST00000474655 NDUFA12Q9UI09 145 aa8.51□□□□□ -1.05
SYNE1-222ENST00000474655 MAST4O15021 2626 aa8.51□□□□□ -1.05
SYNE1-222ENST00000474655 IGLV4-60A0A075B6I1 120 aa8.5□□□□□ -1.05
SYNE1-222ENST00000474655 TRAV26-1A0A087WT03 109 aa8.5□□□□□ -1.05
SYNE1-222ENST00000474655 TRAV13-1A0A0B4J241 112 aa8.5□□□□□ -1.05
SYNE1-222ENST00000474655 TEX48A0A1B0GUV7 120 aa8.5□□□□□ -1.05
SYNE1-222ENST00000474655 TMEM238C9JI98 176 aa8.5□□□□□ -1.05
SYNE1-222ENST00000474655 F5H768 121 aa8.5□□□□□ -1.05
SYNE1-222ENST00000474655 SAMD5Q5TGI4 173 aa8.5□□□□□ -1.05
SYNE1-222ENST00000474655 LITAFQ99732 161 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms