RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 C12orf74Q32Q52 190 aa6.94□□□□□ -1.3
USP39-214ENST00000474572 GAGE13Q4V321 117 aa6.94□□□□□ -1.3
USP39-214ENST00000474572 SCGB1D4Q6XE38 83 aa6.94□□□□□ -1.3
USP39-214ENST00000474572 NHP2Q9NX24 153 aaKnown RBP6.94□□□□□ -1.3
USP39-214ENST00000474572 MTORP42345 2549 aa6.93□□□□□ -1.3
USP39-214ENST00000474572 FN1P02751 2386 aaKnown RBP6.93□□□□□ -1.3
USP39-214ENST00000474572 SETXQ7Z333 2677 aaKnown RBP6.93□□□□□ -1.3
USP39-214ENST00000474572 K7EP34 96 aa6.93□□□□□ -1.3
USP39-214ENST00000474572 TRGV4A0A0C4DH28 118 aa6.92□□□□□ -1.3
USP39-214ENST00000474572 TMEM238LA0A1B0GVL6 79 aa6.92□□□□□ -1.3
USP39-214ENST00000474572 A6NJY4 79 aa6.92□□□□□ -1.3
USP39-214ENST00000474572 IGLL5B9A064 214 aa6.92□□□□□ -1.3
USP39-214ENST00000474572 K7ERJ3 54 aa6.92□□□□□ -1.3
USP39-214ENST00000474572 IGHV3-30P01768 117 aa6.92□□□□□ -1.3
USP39-214ENST00000474572 IGHV3-30-3P0DP02 117 aa6.92□□□□□ -1.3
USP39-214ENST00000474572 IGHV3-30-5P0DP03 117 aa6.92□□□□□ -1.3
USP39-214ENST00000474572 RNASE13Q5GAN3 156 aaKnown RBP6.92□□□□□ -1.3
USP39-214ENST00000474572 RAB37Q96AX2 223 aa6.92□□□□□ -1.3
USP39-214ENST00000474572 CDC42SE2Q9NRR3 84 aa6.92□□□□□ -1.3
USP39-214ENST00000474572 LOC100131303A0A0U1RQF7 123 aa6.91□□□□□ -1.3
USP39-214ENST00000474572 GAGE10A6NGK3 116 aa6.91□□□□□ -1.3
USP39-214ENST00000474572 LYRM9A8MSI8 78 aa6.91□□□□□ -1.3
USP39-214ENST00000474572 APOC4P55056 127 aa6.91□□□□□ -1.3
USP39-214ENST00000474572 HERVK_113P63121 156 aa6.91□□□□□ -1.3
USP39-214ENST00000474572 SAMD5Q5TGI4 173 aa6.91□□□□□ -1.3
USP39-214ENST00000474572 GTF2H5Q6ZYL4 71 aa6.91□□□□□ -1.3
USP39-214ENST00000474572 C10orf126Q8N4M7 172 aa6.91□□□□□ -1.3
USP39-214ENST00000474572 VSIG2Q96IQ7 327 aa6.91□□□□□ -1.3
USP39-214ENST00000474572 TMEM243Q9BU79 118 aa6.91□□□□□ -1.3
USP39-214ENST00000474572 NSD1Q96L73 2696 aaPredicted RBP6.91□□□□□ -1.3
USP39-214ENST00000474572 HECTD1Q9ULT8 2610 aa6.9□□□□□ -1.3
USP39-214ENST00000474572 IGLV5-39A0A0G2JS06 123 aa6.9□□□□□ -1.3
USP39-214ENST00000474572 A0A0J9YXY3 114 aa6.9□□□□□ -1.3
USP39-214ENST00000474572 SRSF9Q13242 221 aaKnown RBP eCLIP6.9□□□□□ -1.3
USP39-214ENST00000474572 LINC00242Q5T6M2 205 aa6.9□□□□□ -1.3
USP39-214ENST00000474572 ZFAND6Q6FIF0 208 aa6.9□□□□□ -1.3
USP39-214ENST00000474572 DGAT2L7PQ6IED9 249 aa6.9□□□□□ -1.3
USP39-214ENST00000474572 NAA38Q9BRA0 125 aaKnown RBP6.9□□□□□ -1.3
USP39-214ENST00000474572 TRBV6-8A0A0A6YYG3 113 aa6.89□□□□□ -1.31
USP39-214ENST00000474572 TRAV8-3A0A0A6YYJ7 113 aa6.89□□□□□ -1.31
USP39-214ENST00000474572 FABP2P12104 132 aa6.89□□□□□ -1.31
USP39-214ENST00000474572 LITAFQ99732 161 aa6.89□□□□□ -1.31
USP39-214ENST00000474572 SPANXDQ9BXN6 97 aa6.89□□□□□ -1.31
USP39-214ENST00000474572 GEMIN7Q9H840 131 aaKnown RBP6.89□□□□□ -1.31
USP39-214ENST00000474572 SPANXCQ9NY87 97 aa6.89□□□□□ -1.31
USP39-214ENST00000474572 CDKN2A-AS1Q9UH64 79 aa6.89□□□□□ -1.31
USP39-214ENST00000474572 SPCS1Q9Y6A9 102 aa6.89□□□□□ -1.31
USP39-214ENST00000474572 IGHV3-64A0A075B6Q5 118 aa6.88□□□□□ -1.31
USP39-214ENST00000474572 TMEM238C9JI98 176 aa6.88□□□□□ -1.31
USP39-214ENST00000474572 TIMM17BO60830 172 aa6.88□□□□□ -1.31
USP39-214ENST00000474572 SPINK8P0C7L1 97 aa6.88□□□□□ -1.31
USP39-214ENST00000474572 COX6A2Q02221 97 aa6.88□□□□□ -1.31
USP39-214ENST00000474572 C2CD3Q4AC94 2353 aa6.88□□□□□ -1.31
USP39-214ENST00000474572 UBE2L6O14933 153 aa6.87□□□□□ -1.31
USP39-214ENST00000474572 NDUFA1O15239 70 aa6.87□□□□□ -1.31
USP39-214ENST00000474572 MIFP14174 115 aa6.87□□□□□ -1.31
USP39-214ENST00000474572 FAM222AQ5U5X8 452 aa6.87□□□□□ -1.31
USP39-214ENST00000474572 Q8NAQ8 132 aa6.87□□□□□ -1.31
USP39-214ENST00000474572 TMEM101Q96IK0 257 aa6.87□□□□□ -1.31
USP39-214ENST00000474572 NDUFA12Q9UI09 145 aa6.87□□□□□ -1.31
USP39-214ENST00000474572 PRO0255Q9UI72 69 aa6.87□□□□□ -1.31
USP39-214ENST00000474572 A0A0B4J2C4 111 aa6.86□□□□□ -1.31
USP39-214ENST00000474572 IGHV4-28A0A0C4DH34 117 aa6.86□□□□□ -1.31
USP39-214ENST00000474572 SMIM1B2RUZ4 78 aa6.86□□□□□ -1.31
USP39-214ENST00000474572 F5H768 121 aa6.86□□□□□ -1.31
USP39-214ENST00000474572 CFC1BP0CG36 223 aa6.86□□□□□ -1.31
USP39-214ENST00000474572 CFC1P0CG37 223 aa6.86□□□□□ -1.31
USP39-214ENST00000474572 DEFB130BP0DP73 79 aa6.86□□□□□ -1.31
USP39-214ENST00000474572 DEFB130AP0DP74 79 aa6.86□□□□□ -1.31
USP39-214ENST00000474572 DEFB135Q30KP9 77 aa6.86□□□□□ -1.31
USP39-214ENST00000474572 KRTAP24-1Q3LI83 254 aa6.86□□□□□ -1.31
USP39-214ENST00000474572 RNF183Q96D59 192 aa6.86□□□□□ -1.31
USP39-214ENST00000474572 HIVEP1P15822 2718 aa6.85□□□□□ -1.31
USP39-214ENST00000474572 A8MZ25 164 aa6.85□□□□□ -1.31
USP39-214ENST00000474572 TSPAN13O95857 204 aa6.85□□□□□ -1.31
USP39-214ENST00000474572 IGHV4-30-4P0DP06 118 aa6.85□□□□□ -1.31
USP39-214ENST00000474572 ATP6V0E2Q8NHE4 81 aa6.85□□□□□ -1.31
USP39-214ENST00000474572 A4D1N5 150 aa6.84□□□□□ -1.31
USP39-214ENST00000474572 EIF4EBP3O60516 100 aaPredicted RBP6.84□□□□□ -1.31
USP39-214ENST00000474572 GYPEP15421 78 aa6.84□□□□□ -1.31
USP39-214ENST00000474572 RPL24P83731 157 aaKnown RBP6.84□□□□□ -1.31
USP39-214ENST00000474572 EGFEM1PQ0D2K5 195 aa6.84□□□□□ -1.31
USP39-214ENST00000474572 GAGE6Q13070 117 aa6.84□□□□□ -1.31
USP39-214ENST00000474572 MIAQ16674 131 aa6.84□□□□□ -1.31
USP39-214ENST00000474572 MUSTN1Q8IVN3 82 aa6.84□□□□□ -1.31
USP39-214ENST00000474572 PGPEP1Q9NXJ5 209 aa6.84□□□□□ -1.31
USP39-214ENST00000474572 IGLV4-60A0A075B6I1 120 aa6.83□□□□□ -1.32
USP39-214ENST00000474572 TRAV26-1A0A087WT03 109 aa6.83□□□□□ -1.32
USP39-214ENST00000474572 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.83□□□□□ -1.32
USP39-214ENST00000474572 TRAV13-1A0A0B4J241 112 aa6.83□□□□□ -1.32
USP39-214ENST00000474572 A0A1B0GUV1 79 aa6.83□□□□□ -1.32
USP39-214ENST00000474572 APOMO95445 188 aa6.83□□□□□ -1.32
USP39-214ENST00000474572 ZNF625Q96I27 306 aaPredicted RBP6.83□□□□□ -1.32
USP39-214ENST00000474572 PPDPFQ9H3Y8 114 aa6.83□□□□□ -1.32
USP39-214ENST00000474572 IFITM1P13164 125 aa6.82□□□□□ -1.32
USP39-214ENST00000474572 ADAMTSL4-AS1Q5T5F5 129 aa6.82□□□□□ -1.32
USP39-214ENST00000474572 PRO1854Q9UHT4 67 aa6.82□□□□□ -1.32
USP39-214ENST00000474572 CELA1Q9UNI1 258 aa6.82□□□□□ -1.32
USP39-214ENST00000474572 JMJD1CQ15652 2540 aa6.81□□□□□ -1.32
USP39-214ENST00000474572 IGHV3OR16-9A0A0B4J2B5 98 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 129.3 ms