RNA–Protein interactions for RNA: ENST00000466222.6

CAPN3-209, Transcript of calpain 3, humanhuman

TSL 2

Gene CAPN3, Length 1,934 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-209ENST00000466222 TMEM170BQ5T4T1 132 aa13.27□□□□□ -0.29
CAPN3-209ENST00000466222 SBSPONQ8IVN8 264 aa13.27□□□□□ -0.29
CAPN3-209ENST00000466222 C20orf203Q8NBC4 194 aa13.27□□□□□ -0.29
CAPN3-209ENST00000466222 MEGF8Q7Z7M0 2845 aa13.26□□□□□ -0.29
CAPN3-209ENST00000466222 J3QR89 54 aa13.26□□□□□ -0.29
CAPN3-209ENST00000466222 RPL24P83731 157 aaKnown RBP13.26□□□□□ -0.29
CAPN3-209ENST00000466222 LYRM7Q5U5X0 104 aa13.26□□□□□ -0.29
CAPN3-209ENST00000466222 MRAPQ8TCY5 172 aa13.26□□□□□ -0.29
CAPN3-209ENST00000466222 PTH2Q96A98 100 aa13.25□□□□□ -0.29
CAPN3-209ENST00000466222 OVOL2Q9BRP0 275 aa13.25□□□□□ -0.29
CAPN3-209ENST00000466222 IGHV4-28A0A0C4DH34 117 aa13.25□□□□□ -0.29
CAPN3-209ENST00000466222 ZNRF2Q8NHG8 242 aa13.25□□□□□ -0.29
CAPN3-209ENST00000466222 SPXQ9BT56 116 aa13.25□□□□□ -0.29
CAPN3-209ENST00000466222 CRYBA4P53673 196 aa13.24□□□□□ -0.29
CAPN3-209ENST00000466222 GAGE13Q4V321 117 aa13.24□□□□□ -0.29
CAPN3-209ENST00000466222 SLC25A29Q8N8R3 303 aa13.24□□□□□ -0.29
CAPN3-209ENST00000466222 PGPEP1Q9NXJ5 209 aa13.24□□□□□ -0.29
CAPN3-209ENST00000466222 TEX48A0A1B0GUV7 120 aa13.23□□□□□ -0.29
CAPN3-209ENST00000466222 J3QQQ9 107 aa13.23□□□□□ -0.29
CAPN3-209ENST00000466222 LEPROTO15243 131 aa13.23□□□□□ -0.29
CAPN3-209ENST00000466222 GAGE7O76087 117 aa13.23□□□□□ -0.29
CAPN3-209ENST00000466222 GAGE12FP0CL80 117 aa13.23□□□□□ -0.29
CAPN3-209ENST00000466222 GAGE12GP0CL81 117 aa13.23□□□□□ -0.29
CAPN3-209ENST00000466222 GAGE12IP0CL82 117 aa13.23□□□□□ -0.29
CAPN3-209ENST00000466222 P0DMU3 169 aa13.23□□□□□ -0.29
CAPN3-209ENST00000466222 FAM231AP0DMU4 169 aa13.23□□□□□ -0.29
CAPN3-209ENST00000466222 FAM231CP0DMU5 169 aa13.23□□□□□ -0.29
CAPN3-209ENST00000466222 LGALS3P17931 250 aaKnown RBP13.23□□□□□ -0.29
CAPN3-209ENST00000466222 DAZ2Q13117 558 aaKnown RBP13.23□□□□□ -0.29
CAPN3-209ENST00000466222 PYGO1Q9Y3Y4 419 aa13.23□□□□□ -0.29
CAPN3-209ENST00000466222 CFAP126Q5VTH2 177 aa13.23□□□□□ -0.29
CAPN3-209ENST00000466222 Q8NAQ8 132 aa13.23□□□□□ -0.29
CAPN3-209ENST00000466222 TMEM223A0PJW6 202 aa13.22□□□□□ -0.29
CAPN3-209ENST00000466222 A8MWV9 139 aa13.22□□□□□ -0.29
CAPN3-209ENST00000466222 H3BMG7 143 aa13.22□□□□□ -0.29
CAPN3-209ENST00000466222 IGHV3-53P01767 116 aa13.21□□□□□ -0.29
CAPN3-209ENST00000466222 PRO0461Q9UI25 63 aa13.21□□□□□ -0.29
CAPN3-209ENST00000466222 TENM3Q9P273 2699 aa13.21□□□□□ -0.29
CAPN3-209ENST00000466222 SMIM9A6NGZ8 99 aa13.21□□□□□ -0.3
CAPN3-209ENST00000466222 Q6ZSN1 163 aa13.21□□□□□ -0.3
CAPN3-209ENST00000466222 IGHV3-30P01768 117 aa13.2□□□□□ -0.3
CAPN3-209ENST00000466222 IGHV3-30-5P0DP03 117 aa13.2□□□□□ -0.3
CAPN3-209ENST00000466222 DEFB130BP0DP73 79 aa13.2□□□□□ -0.3
CAPN3-209ENST00000466222 DEFB130AP0DP74 79 aa13.2□□□□□ -0.3
CAPN3-209ENST00000466222 TSPEAR-AS2P59090 65 aa13.2□□□□□ -0.3
CAPN3-209ENST00000466222 WFDC2Q14508 124 aa13.2□□□□□ -0.3
CAPN3-209ENST00000466222 AMELXQ99217 191 aa13.2□□□□□ -0.3
CAPN3-209ENST00000466222 VCX2Q9H322 139 aa13.2□□□□□ -0.3
CAPN3-209ENST00000466222 IGLV4-3A0A075B6K6 122 aa13.19□□□□□ -0.3
CAPN3-209ENST00000466222 Q9UF83 564 aa13.19□□□□□ -0.3
CAPN3-209ENST00000466222 RHODO00212 210 aa13.19□□□□□ -0.3
CAPN3-209ENST00000466222 TSPAN13O95857 204 aa13.19□□□□□ -0.3
CAPN3-209ENST00000466222 ZNF22P17026 224 aaPredicted RBP13.19□□□□□ -0.3
CAPN3-209ENST00000466222 FAM222AQ5U5X8 452 aa13.19□□□□□ -0.3
CAPN3-209ENST00000466222 CELA1Q9UNI1 258 aa13.19□□□□□ -0.3
CAPN3-209ENST00000466222 HUWE1Q7Z6Z7 4374 aaKnown RBP13.19□□□□□ -0.3
CAPN3-209ENST00000466222 UBE2D3P61077 147 aa13.18□□□□□ -0.3
CAPN3-209ENST00000466222 UBE2D2P62837 147 aa13.18□□□□□ -0.3
CAPN3-209ENST00000466222 TRGV2A0A075B6R0 118 aa13.17□□□□□ -0.3
CAPN3-209ENST00000466222 RS1O15537 224 aa13.17□□□□□ -0.3
CAPN3-209ENST00000466222 MIFP14174 115 aa13.17□□□□□ -0.3
CAPN3-209ENST00000466222 ATP6V0E2Q8NHE4 81 aa13.17□□□□□ -0.3
CAPN3-209ENST00000466222 DEFB104AQ8WTQ1 72 aa13.17□□□□□ -0.3
CAPN3-209ENST00000466222 TNFRSF18Q9Y5U5 241 aa13.17□□□□□ -0.3
CAPN3-209ENST00000466222 TRBV20-1A0A075B6N2 111 aa13.15□□□□□ -0.3
CAPN3-209ENST00000466222 DNAJC30Q96LL9 226 aa13.15□□□□□ -0.3
CAPN3-209ENST00000466222 OPRPNQ99935 248 aaPredicted RBP13.15□□□□□ -0.3
CAPN3-209ENST00000466222 APOMO95445 188 aa13.15□□□□□ -0.3
CAPN3-209ENST00000466222 C10orf126Q8N4M7 172 aa13.15□□□□□ -0.3
CAPN3-209ENST00000466222 SPANXA1Q9NS26 97 aa13.15□□□□□ -0.3
CAPN3-209ENST00000466222 TMEM238C9JI98 176 aa13.14□□□□□ -0.31
CAPN3-209ENST00000466222 ETDBQ3ZM63 59 aa13.14□□□□□ -0.31
CAPN3-209ENST00000466222 DNAH9Q9NYC9 4486 aa13.14□□□□□ -0.31
CAPN3-209ENST00000466222 CFC1BP0CG36 223 aa13.13□□□□□ -0.31
CAPN3-209ENST00000466222 CFC1P0CG37 223 aa13.13□□□□□ -0.31
CAPN3-209ENST00000466222 MRPS36P82909 103 aaKnown RBP13.13□□□□□ -0.31
CAPN3-209ENST00000466222 COL7A1Q02388 2944 aa13.13□□□□□ -0.31
CAPN3-209ENST00000466222 PRKDCP78527 4128 aaKnown RBP13.13□□□□□ -0.31
CAPN3-209ENST00000466222 A0A0J9YXV3 536 aa13.13□□□□□ -0.31
CAPN3-209ENST00000466222 PRO1854Q9UHT4 67 aa13.13□□□□□ -0.31
CAPN3-209ENST00000466222 TRAV4A0A0B4J268 109 aa13.12□□□□□ -0.31
CAPN3-209ENST00000466222 LOC107984156A0A0G2JMH3 177 aa13.12□□□□□ -0.31
CAPN3-209ENST00000466222 ARL17AQ8IVW1 177 aa13.12□□□□□ -0.31
CAPN3-209ENST00000466222 LINC00612Q8N6U2 182 aa13.12□□□□□ -0.31
CAPN3-209ENST00000466222 TM2D3Q9BRN9 247 aa13.12□□□□□ -0.31
CAPN3-209ENST00000466222 A0A0B4J2C4 111 aa13.11□□□□□ -0.31
CAPN3-209ENST00000466222 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.11□□□□□ -0.31
CAPN3-209ENST00000466222 SCGB1A1P11684 91 aa13.11□□□□□ -0.31
CAPN3-209ENST00000466222 PSMB2P49721 201 aa13.11□□□□□ -0.31
CAPN3-209ENST00000466222 SH2D6Q7Z4S9 175 aa13.11□□□□□ -0.31
CAPN3-209ENST00000466222 SPATA25Q9BR10 227 aa13.11□□□□□ -0.31
CAPN3-209ENST00000466222 A0A0J9YWU9 116 aa13.1□□□□□ -0.31
CAPN3-209ENST00000466222 LYRM9A8MSI8 78 aa13.1□□□□□ -0.31
CAPN3-209ENST00000466222 TIMM21Q9BVV7 248 aa13.09□□□□□ -0.31
CAPN3-209ENST00000466222 TINCRA0A1B0GVN0 87 aa13.09□□□□□ -0.31
CAPN3-209ENST00000466222 GAGE12HA6NDE8 117 aa13.09□□□□□ -0.31
CAPN3-209ENST00000466222 SIGMAR1Q99720 223 aa13.09□□□□□ -0.31
CAPN3-209ENST00000466222 SPART-AS1P0CW21 52 aa13.08□□□□□ -0.32
CAPN3-209ENST00000466222 FHL2Q14192 279 aa13.08□□□□□ -0.32
CAPN3-209ENST00000466222 CHCHD7Q9BUK0 85 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms