RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 CEND1Q8N111 149 aa12.97□□□□□ -0.33
COL9A3-205ENST00000466192 RPL36ALQ969Q0 106 aaKnown RBP12.97□□□□□ -0.33
COL9A3-205ENST00000466192 AMELXQ99217 191 aa12.97□□□□□ -0.33
COL9A3-205ENST00000466192 HIST1H4GQ99525 98 aa12.97□□□□□ -0.33
COL9A3-205ENST00000466192 TEX48A0A1B0GUV7 120 aa12.96□□□□□ -0.33
COL9A3-205ENST00000466192 KIR2DL5BQ8NHK3 375 aa12.96□□□□□ -0.33
COL9A3-205ENST00000466192 SPANXA1Q9NS26 97 aa12.96□□□□□ -0.33
COL9A3-205ENST00000466192 TSPEAR-AS2P59090 65 aa12.96□□□□□ -0.34
COL9A3-205ENST00000466192 PRIMA1Q86XR5 153 aa12.96□□□□□ -0.34
COL9A3-205ENST00000466192 PKD1L1Q8TDX9 2849 aa12.95□□□□□ -0.34
COL9A3-205ENST00000466192 GAGE12JA6NER3 117 aa12.95□□□□□ -0.34
COL9A3-205ENST00000466192 ZNF22P17026 224 aaPredicted RBP12.95□□□□□ -0.34
COL9A3-205ENST00000466192 GAGE4Q13068 117 aa12.95□□□□□ -0.34
COL9A3-205ENST00000466192 GAGE5Q13069 117 aa12.95□□□□□ -0.34
COL9A3-205ENST00000466192 DEFB135Q30KP9 77 aa12.95□□□□□ -0.34
COL9A3-205ENST00000466192 GAGE13Q4V321 117 aa12.95□□□□□ -0.34
COL9A3-205ENST00000466192 SCGB1D4Q6XE38 83 aa12.95□□□□□ -0.34
COL9A3-205ENST00000466192 TM2D2Q9BX73 214 aa12.95□□□□□ -0.34
COL9A3-205ENST00000466192 SMIM9A6NGZ8 99 aa12.94□□□□□ -0.34
COL9A3-205ENST00000466192 RPL24P83731 157 aaKnown RBP12.94□□□□□ -0.34
COL9A3-205ENST00000466192 PLEKHB2Q96CS7 222 aa12.94□□□□□ -0.34
COL9A3-205ENST00000466192 MAST4O15021 2626 aa12.94□□□□□ -0.34
COL9A3-205ENST00000466192 APOC4P55056 127 aa12.94□□□□□ -0.34
COL9A3-205ENST00000466192 UBE2D3P61077 147 aa12.94□□□□□ -0.34
COL9A3-205ENST00000466192 UBE2D2P62837 147 aa12.94□□□□□ -0.34
COL9A3-205ENST00000466192 Q6ZUT4 128 aa12.94□□□□□ -0.34
COL9A3-205ENST00000466192 C3orf56Q8N813 242 aa12.94□□□□□ -0.34
COL9A3-205ENST00000466192 SIGMAR1Q99720 223 aa12.94□□□□□ -0.34
COL9A3-205ENST00000466192 IGHV3-64A0A075B6Q5 118 aa12.93□□□□□ -0.34
COL9A3-205ENST00000466192 TMEM223A0PJW6 202 aa12.93□□□□□ -0.34
COL9A3-205ENST00000466192 CRYBA4P53673 196 aa12.93□□□□□ -0.34
COL9A3-205ENST00000466192 FHL2Q14192 279 aa12.93□□□□□ -0.34
COL9A3-205ENST00000466192 TAL2Q16559 108 aa12.93□□□□□ -0.34
COL9A3-205ENST00000466192 TRGV4A0A0C4DH28 118 aa12.93□□□□□ -0.34
COL9A3-205ENST00000466192 DEFB130BP0DP73 79 aa12.93□□□□□ -0.34
COL9A3-205ENST00000466192 DEFB130AP0DP74 79 aa12.93□□□□□ -0.34
COL9A3-205ENST00000466192 OXLD1Q5BKU9 147 aa12.93□□□□□ -0.34
COL9A3-205ENST00000466192 DAZ4Q86SG3 579 aaKnown RBP12.93□□□□□ -0.34
COL9A3-205ENST00000466192 LINC00612Q8N6U2 182 aa12.93□□□□□ -0.34
COL9A3-205ENST00000466192 DAZ3Q9NR90 486 aaKnown RBP12.93□□□□□ -0.34
COL9A3-205ENST00000466192 NHP2Q9NX24 153 aaKnown RBP12.93□□□□□ -0.34
COL9A3-205ENST00000466192 LOC100131303A0A0U1RQF7 123 aa12.92□□□□□ -0.34
COL9A3-205ENST00000466192 TRBV6-4A0A1B0GX49 114 aa12.92□□□□□ -0.34
COL9A3-205ENST00000466192 J3QQQ9 107 aa12.92□□□□□ -0.34
COL9A3-205ENST00000466192 K7ERJ3 54 aa12.92□□□□□ -0.34
COL9A3-205ENST00000466192 MRPS36P82909 103 aaKnown RBP12.92□□□□□ -0.34
COL9A3-205ENST00000466192 NTM-AS1Q6ZSK4 140 aa12.91□□□□□ -0.34
COL9A3-205ENST00000466192 IGHV4-30-4P0DP06 118 aa12.91□□□□□ -0.34
COL9A3-205ENST00000466192 LINC00694P0DN24 101 aa12.9□□□□□ -0.34
COL9A3-205ENST00000466192 DGAT2L7PQ6IED9 249 aa12.9□□□□□ -0.34
COL9A3-205ENST00000466192 GTSF1LQ9H1H1 148 aa12.9□□□□□ -0.34
COL9A3-205ENST00000466192 LGALS3P17931 250 aaKnown RBP12.9□□□□□ -0.34
COL9A3-205ENST00000466192 F8W1H4 67 aa12.89□□□□□ -0.35
COL9A3-205ENST00000466192 SHISA2Q6UWI4 295 aa12.89□□□□□ -0.35
COL9A3-205ENST00000466192 GAGE12HA6NDE8 117 aa12.88□□□□□ -0.35
COL9A3-205ENST00000466192 LEPROTO15243 131 aa12.88□□□□□ -0.35
COL9A3-205ENST00000466192 J3QR89 54 aa12.88□□□□□ -0.35
COL9A3-205ENST00000466192 KRTAP10-11P60412 298 aa12.88□□□□□ -0.35
COL9A3-205ENST00000466192 SRSF9Q13242 221 aaKnown RBP eCLIP12.88□□□□□ -0.35
COL9A3-205ENST00000466192 A0A0J9YY99 117 aa12.87□□□□□ -0.35
COL9A3-205ENST00000466192 A0A1B0GV72 72 aa12.87□□□□□ -0.35
COL9A3-205ENST00000466192 DEFB4AO15263 64 aa12.87□□□□□ -0.35
COL9A3-205ENST00000466192 SMAGPQ0VAQ4 97 aa12.87□□□□□ -0.35
COL9A3-205ENST00000466192 FAM222AQ5U5X8 452 aa12.87□□□□□ -0.35
COL9A3-205ENST00000466192 SVIPQ8NHG7 77 aa12.87□□□□□ -0.35
COL9A3-205ENST00000466192 SPATA25Q9BR10 227 aa12.87□□□□□ -0.35
COL9A3-205ENST00000466192 SPANXB1Q9NS25 103 aaPredicted RBP12.87□□□□□ -0.35
COL9A3-205ENST00000466192 TINCRA0A1B0GVN0 87 aa12.87□□□□□ -0.35
COL9A3-205ENST00000466192 TIMM21Q9BVV7 248 aa12.87□□□□□ -0.35
COL9A3-205ENST00000466192 COL6A5A8TX70 2615 aa12.87□□□□□ -0.35
COL9A3-205ENST00000466192 ANK2Q01484 3957 aa12.86□□□□□ -0.35
COL9A3-205ENST00000466192 TRAV8-3A0A0A6YYJ7 113 aa12.86□□□□□ -0.35
COL9A3-205ENST00000466192 IGHV4-28A0A0C4DH34 117 aa12.86□□□□□ -0.35
COL9A3-205ENST00000466192 SBSPONQ8IVN8 264 aa12.86□□□□□ -0.35
COL9A3-205ENST00000466192 UBE2D1P51668 147 aa12.85□□□□□ -0.35
COL9A3-205ENST00000466192 LYRM9A8MSI8 78 aa12.84□□□□□ -0.35
COL9A3-205ENST00000466192 IGHV3-30-3P0DP02 117 aa12.84□□□□□ -0.35
COL9A3-205ENST00000466192 C12orf74Q32Q52 190 aa12.84□□□□□ -0.35
COL9A3-205ENST00000466192 GEMIN7Q9H840 131 aaKnown RBP12.84□□□□□ -0.35
COL9A3-205ENST00000466192 Q8NAQ8 132 aa12.84□□□□□ -0.35
COL9A3-205ENST00000466192 IGLL5B9A064 214 aa12.83□□□□□ -0.36
COL9A3-205ENST00000466192 WFDC2Q14508 124 aa12.83□□□□□ -0.36
COL9A3-205ENST00000466192 RNF183Q96D59 192 aa12.83□□□□□ -0.36
COL9A3-205ENST00000466192 EGFEM1PQ0D2K5 195 aa12.83□□□□□ -0.36
COL9A3-205ENST00000466192 DNAH3Q8TD57 4116 aa12.82□□□□□ -0.36
COL9A3-205ENST00000466192 UBE2L6O14933 153 aa12.82□□□□□ -0.36
COL9A3-205ENST00000466192 SPINK8P0C7L1 97 aa12.82□□□□□ -0.36
COL9A3-205ENST00000466192 TMEM243Q9BU79 118 aa12.82□□□□□ -0.36
COL9A3-205ENST00000466192 CSDC2Q9Y534 153 aaKnown RBP12.82□□□□□ -0.36
COL9A3-205ENST00000466192 IGHV1-58A0A0C4DH39 117 aa12.81□□□□□ -0.36
COL9A3-205ENST00000466192 MIFP14174 115 aa12.81□□□□□ -0.36
COL9A3-205ENST00000466192 CDKN2A-AS1Q9UH64 79 aa12.81□□□□□ -0.36
COL9A3-205ENST00000466192 A8MZ25 164 aa12.8□□□□□ -0.36
COL9A3-205ENST00000466192 COX6A2Q02221 97 aa12.8□□□□□ -0.36
COL9A3-205ENST00000466192 TRAV13-1A0A0B4J241 112 aa12.8□□□□□ -0.36
COL9A3-205ENST00000466192 A0A1B0GWB2 263 aa12.8□□□□□ -0.36
COL9A3-205ENST00000466192 CDC42SE2Q9NRR3 84 aa12.8□□□□□ -0.36
COL9A3-205ENST00000466192 CELA1Q9UNI1 258 aa12.8□□□□□ -0.36
COL9A3-205ENST00000466192 C10orf126Q8N4M7 172 aa12.79□□□□□ -0.36
COL9A3-205ENST00000466192 VSIG2Q96IQ7 327 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms