RNA–Protein interactions for RNA: ENST00000398022.6

TM9SF4-202, Transcript of transmembrane 9 superfamily member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF4, Length 3,978 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-202ENST00000398022 CIRBPQ14011 172 aaKnown RBP4.88□□□□□ -1.63
TM9SF4-202ENST00000398022 MRPL51Q4U2R6 128 aaKnown RBP4.88□□□□□ -1.63
TM9SF4-202ENST00000398022 C8orf49Q96NF6 230 aa4.88□□□□□ -1.63
TM9SF4-202ENST00000398022 U3KQK5 164 aa4.88□□□□□ -1.63
TM9SF4-202ENST00000398022 E7EQL1 145 aa4.87□□□□□ -1.63
TM9SF4-202ENST00000398022 C7orf65Q6ZTY9 151 aa4.87□□□□□ -1.63
TM9SF4-202ENST00000398022 OPRPNQ99935 248 aaPredicted RBP4.87□□□□□ -1.63
TM9SF4-202ENST00000398022 TEP1Q99973 2627 aaKnown RBP4.87□□□□□ -1.63
TM9SF4-202ENST00000398022 FBN3Q75N90 2809 aa4.87□□□□□ -1.63
TM9SF4-202ENST00000398022 CSPG4Q6UVK1 2322 aa4.87□□□□□ -1.63
TM9SF4-202ENST00000398022 SONP18583 2426 aaKnown RBP4.87□□□□□ -1.63
TM9SF4-202ENST00000398022 TRBV25-1A0A075B6N4 114 aa4.87□□□□□ -1.63
TM9SF4-202ENST00000398022 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.87□□□□□ -1.63
TM9SF4-202ENST00000398022 C6orf99Q4VX62 202 aa4.87□□□□□ -1.63
TM9SF4-202ENST00000398022 RNF185Q96GF1 192 aa4.87□□□□□ -1.63
TM9SF4-202ENST00000398022 FUSP35637 526 aaKnown RBP eCLIP4.86□□□□□ -1.63
TM9SF4-202ENST00000398022 CRIP1P50238 77 aa4.86□□□□□ -1.63
TM9SF4-202ENST00000398022 PRB3Q04118 309 aaPredicted RBP4.86□□□□□ -1.63
TM9SF4-202ENST00000398022 ABCA2Q9BZC7 2435 aa4.86□□□□□ -1.63
TM9SF4-202ENST00000398022 IGKV2-40A0A087WW87 121 aaPredicted RBP4.86□□□□□ -1.63
TM9SF4-202ENST00000398022 IGKV2D-40P01614 121 aaPredicted RBP4.86□□□□□ -1.63
TM9SF4-202ENST00000398022 KRTAP21-3Q3LHN1 58 aa4.86□□□□□ -1.63
TM9SF4-202ENST00000398022 MAP6D1Q9H9H5 199 aa4.86□□□□□ -1.63
TM9SF4-202ENST00000398022 AGRNO00468 2067 aa4.85□□□□□ -1.63
TM9SF4-202ENST00000398022 IGHV3OR16-9A0A0B4J2B5 98 aa4.85□□□□□ -1.63
TM9SF4-202ENST00000398022 TRBV12-3P01733 135 aa4.85□□□□□ -1.63
TM9SF4-202ENST00000398022 S4R3C0 116 aa4.85□□□□□ -1.63
TM9SF4-202ENST00000398022 NIPBLQ6KC79 2804 aaeCLIP4.85□□□□□ -1.63
TM9SF4-202ENST00000398022 IBA57-AS1B1ANH7 110 aa4.85□□□□□ -1.63
TM9SF4-202ENST00000398022 FAM223AQ8IWN6 122 aa4.85□□□□□ -1.63
TM9SF4-202ENST00000398022 NPBQ8NG41 125 aa4.85□□□□□ -1.63
TM9SF4-202ENST00000398022 FXYD7P58549 80 aa4.85□□□□□ -1.63
TM9SF4-202ENST00000398022 MAPKAPK5-AS1Q8N8E1 139 aa4.85□□□□□ -1.63
TM9SF4-202ENST00000398022 F8P00451 2351 aa4.85□□□□□ -1.63
TM9SF4-202ENST00000398022 IGLV11-55A0A075B6I3 123 aa4.84□□□□□ -1.63
TM9SF4-202ENST00000398022 A0A096LNJ9 63 aa4.84□□□□□ -1.63
TM9SF4-202ENST00000398022 TRBV10-2A0A0K0K1G8 114 aa4.84□□□□□ -1.63
TM9SF4-202ENST00000398022 TEX49A0A1B0GTD5 131 aa4.84□□□□□ -1.63
TM9SF4-202ENST00000398022 LYNX1G3V0Z9 82 aa4.84□□□□□ -1.63
TM9SF4-202ENST00000398022 H7C2G1 150 aa4.84□□□□□ -1.63
TM9SF4-202ENST00000398022 NDUFC1O43677 76 aa4.84□□□□□ -1.63
TM9SF4-202ENST00000398022 NDUFA3O95167 84 aa4.84□□□□□ -1.63
TM9SF4-202ENST00000398022 LYNX1P0DP58 116 aa4.84□□□□□ -1.63
TM9SF4-202ENST00000398022 MPLKIPQ8TAP9 179 aa4.84□□□□□ -1.63
TM9SF4-202ENST00000398022 LINC01549A6NIU2 74 aa4.84□□□□□ -1.63
TM9SF4-202ENST00000398022 H7BZZ5 65 aa4.84□□□□□ -1.63
TM9SF4-202ENST00000398022 M0R1W7 72 aa4.84□□□□□ -1.63
TM9SF4-202ENST00000398022 UBE2AP49459 152 aa4.84□□□□□ -1.63
TM9SF4-202ENST00000398022 CXCL6P80162 114 aa4.84□□□□□ -1.63
TM9SF4-202ENST00000398022 RBMY1FQ15415 496 aaKnown RBP4.84□□□□□ -1.63
TM9SF4-202ENST00000398022 Q8TAT8 98 aa4.84□□□□□ -1.63
TM9SF4-202ENST00000398022 DIRC1Q969H9 104 aa4.84□□□□□ -1.63
TM9SF4-202ENST00000398022 S100A4P26447 101 aaKnown RBP4.84□□□□□ -1.64
TM9SF4-202ENST00000398022 PRR3P79522 188 aaKnown RBP4.84□□□□□ -1.64
TM9SF4-202ENST00000398022 RHOHQ15669 191 aa4.84□□□□□ -1.64
TM9SF4-202ENST00000398022 GPHB5Q86YW7 130 aa4.84□□□□□ -1.64
TM9SF4-202ENST00000398022 ITPR3Q14573 2671 aa4.84□□□□□ -1.64
TM9SF4-202ENST00000398022 TRRAPQ9Y4A5 3859 aa4.83□□□□□ -1.64
TM9SF4-202ENST00000398022 PRB4P10163 310 aaPredicted RBP4.83□□□□□ -1.64
TM9SF4-202ENST00000398022 ZNF706Q9Y5V0 76 aaPredicted RBP4.83□□□□□ -1.64
TM9SF4-202ENST00000398022 ANKHD1Q8IWZ3 2542 aaKnown RBP4.83□□□□□ -1.64
TM9SF4-202ENST00000398022 TRBV7-3A0A075B6L6 115 aa4.83□□□□□ -1.64
TM9SF4-202ENST00000398022 LYPD5Q6UWN5 251 aa4.83□□□□□ -1.64
TM9SF4-202ENST00000398022 DKK2Q9UBU2 259 aa4.83□□□□□ -1.64
TM9SF4-202ENST00000398022 HIVEP3Q5T1R4 2406 aa4.83□□□□□ -1.64
TM9SF4-202ENST00000398022 TRBV7-1A0A0A6YYK4 115 aa4.83□□□□□ -1.64
TM9SF4-202ENST00000398022 A0A0B4J2C4 111 aa4.83□□□□□ -1.64
TM9SF4-202ENST00000398022 A0A0J9YXV3 536 aa4.83□□□□□ -1.64
TM9SF4-202ENST00000398022 XCL1P47992 114 aa4.83□□□□□ -1.64
TM9SF4-202ENST00000398022 BLCAPP62952 87 aa4.83□□□□□ -1.64
TM9SF4-202ENST00000398022 ATXN8Q156A1 80 aa4.83□□□□□ -1.64
TM9SF4-202ENST00000398022 SDIM1Q6ZPB5 146 aa4.83□□□□□ -1.64
TM9SF4-202ENST00000398022 XCL2Q9UBD3 114 aa4.83□□□□□ -1.64
TM9SF4-202ENST00000398022 K7EMI3 77 aa4.82□□□□□ -1.64
TM9SF4-202ENST00000398022 LINC01554Q52M75 96 aa4.82□□□□□ -1.64
TM9SF4-202ENST00000398022 CNFNQ9BYD5 112 aa4.82□□□□□ -1.64
TM9SF4-202ENST00000398022 IGHV3-23P01764 117 aa4.82□□□□□ -1.64
TM9SF4-202ENST00000398022 PSPHP1O15172 72 aa4.82□□□□□ -1.64
TM9SF4-202ENST00000398022 UBE2D1P51668 147 aa4.82□□□□□ -1.64
TM9SF4-202ENST00000398022 MINOS1Q5TGZ0 78 aa4.82□□□□□ -1.64
TM9SF4-202ENST00000398022 MINOS1-NBL1R4GNA1 71 aa4.82□□□□□ -1.64
TM9SF4-202ENST00000398022 COX6CP09669 75 aa4.81□□□□□ -1.64
TM9SF4-202ENST00000398022 IGHV4-31P0DP07 118 aa4.81□□□□□ -1.64
TM9SF4-202ENST00000398022 SPANXN1Q5VSR9 72 aa4.81□□□□□ -1.64
TM9SF4-202ENST00000398022 TTTY13Q9BZ97 58 aa4.81□□□□□ -1.64
TM9SF4-202ENST00000398022 CTSGP08311 255 aa4.81□□□□□ -1.64
TM9SF4-202ENST00000398022 LINC01560Q8TB33 94 aa4.81□□□□□ -1.64
TM9SF4-202ENST00000398022 DNAH3Q8TD57 4116 aa4.81□□□□□ -1.64
TM9SF4-202ENST00000398022 ZNF22P17026 224 aaPredicted RBP4.81□□□□□ -1.64
TM9SF4-202ENST00000398022 VMO1Q7Z5L0 202 aa4.81□□□□□ -1.64
TM9SF4-202ENST00000398022 ZNF815PA8K554 130 aa4.8□□□□□ -1.64
TM9SF4-202ENST00000398022 PLNP26678 52 aa4.8□□□□□ -1.64
TM9SF4-202ENST00000398022 IGFL4Q6B9Z1 124 aa4.8□□□□□ -1.64
TM9SF4-202ENST00000398022 PIP4P2Q8N4L2 257 aa4.8□□□□□ -1.64
TM9SF4-202ENST00000398022 MSRB1Q9NZV6 116 aa4.8□□□□□ -1.64
TM9SF4-202ENST00000398022 IGHV3-35A0A0C4DH35 117 aa4.8□□□□□ -1.64
TM9SF4-202ENST00000398022 LINC01546A6NGU7 62 aa4.8□□□□□ -1.64
TM9SF4-202ENST00000398022 ODF3BA8MYP8 253 aa4.8□□□□□ -1.64
TM9SF4-202ENST00000398022 C2orf82Q6UX34 121 aa4.8□□□□□ -1.64
TM9SF4-202ENST00000398022 DYNAPQ8N1N2 210 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms