RNA–Protein interactions for RNA: ENST00000393452.7

TDP1-202, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best) BASIC

Gene TDP1, Length 2,370 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-202ENST00000393452 Q6ZUT4 128 aa6.45□□□□□ -1.38
TDP1-202ENST00000393452 DAZ4Q86SG3 579 aaKnown RBP6.45□□□□□ -1.38
TDP1-202ENST00000393452 RPL36ALQ969Q0 106 aaKnown RBP6.45□□□□□ -1.38
TDP1-202ENST00000393452 DAZ3Q9NR90 486 aaKnown RBP6.45□□□□□ -1.38
TDP1-202ENST00000393452 SPCS1Q9Y6A9 102 aa6.45□□□□□ -1.38
TDP1-202ENST00000393452 UBE2D3P61077 147 aa6.45□□□□□ -1.38
TDP1-202ENST00000393452 UBE2D2P62837 147 aa6.45□□□□□ -1.38
TDP1-202ENST00000393452 RNASE13Q5GAN3 156 aaKnown RBP6.45□□□□□ -1.38
TDP1-202ENST00000393452 IGHV3-30-3P0DP02 117 aa6.44□□□□□ -1.38
TDP1-202ENST00000393452 CSDC2Q9Y534 153 aaKnown RBP6.44□□□□□ -1.38
TDP1-202ENST00000393452 IGHV3-30P01768 117 aa6.44□□□□□ -1.38
TDP1-202ENST00000393452 IGHV3-30-5P0DP03 117 aa6.44□□□□□ -1.38
TDP1-202ENST00000393452 INSL3P51460 131 aa6.44□□□□□ -1.38
TDP1-202ENST00000393452 NTM-AS1Q6ZSK4 140 aa6.44□□□□□ -1.38
TDP1-202ENST00000393452 IGLV5-45A0A087WSX0 123 aa6.43□□□□□ -1.38
TDP1-202ENST00000393452 SBSPONQ8IVN8 264 aa6.43□□□□□ -1.38
TDP1-202ENST00000393452 IGHV3-64A0A075B6Q5 118 aa6.43□□□□□ -1.38
TDP1-202ENST00000393452 TRGV2A0A075B6R0 118 aa6.43□□□□□ -1.38
TDP1-202ENST00000393452 IGHV1-58A0A0C4DH39 117 aa6.43□□□□□ -1.38
TDP1-202ENST00000393452 TRBV6-4A0A1B0GX49 114 aa6.43□□□□□ -1.38
TDP1-202ENST00000393452 GAGE7O76087 117 aa6.43□□□□□ -1.38
TDP1-202ENST00000393452 GAGE12FP0CL80 117 aa6.43□□□□□ -1.38
TDP1-202ENST00000393452 GAGE12GP0CL81 117 aa6.43□□□□□ -1.38
TDP1-202ENST00000393452 GAGE12IP0CL82 117 aa6.43□□□□□ -1.38
TDP1-202ENST00000393452 TIRAPP58753 221 aa6.43□□□□□ -1.38
TDP1-202ENST00000393452 C10orf126Q8N4M7 172 aa6.43□□□□□ -1.38
TDP1-202ENST00000393452 HIVEP1P15822 2718 aa6.43□□□□□ -1.38
TDP1-202ENST00000393452 K7ERU9 68 aa6.42□□□□□ -1.38
TDP1-202ENST00000393452 LINC00694P0DN24 101 aa6.42□□□□□ -1.38
TDP1-202ENST00000393452 VSIG2Q96IQ7 327 aa6.42□□□□□ -1.38
TDP1-202ENST00000393452 GTSF1LQ9H1H1 148 aa6.42□□□□□ -1.38
TDP1-202ENST00000393452 TRAV8-3A0A0A6YYJ7 113 aa6.42□□□□□ -1.38
TDP1-202ENST00000393452 GAGE12JA6NER3 117 aa6.42□□□□□ -1.38
TDP1-202ENST00000393452 GAGE4Q13068 117 aa6.42□□□□□ -1.38
TDP1-202ENST00000393452 GAGE5Q13069 117 aa6.42□□□□□ -1.38
TDP1-202ENST00000393452 GAGE13Q4V321 117 aa6.42□□□□□ -1.38
TDP1-202ENST00000393452 DGAT2L7PQ6IED9 249 aa6.42□□□□□ -1.38
TDP1-202ENST00000393452 FAM19A3Q7Z5A8 133 aa6.42□□□□□ -1.38
TDP1-202ENST00000393452 SPATA3Q8NHX4 192 aa6.42□□□□□ -1.38
TDP1-202ENST00000393452 TEP1Q99973 2627 aaKnown RBP6.41□□□□□ -1.38
TDP1-202ENST00000393452 C9orf66Q5T8R8 295 aa6.41□□□□□ -1.38
TDP1-202ENST00000393452 LINC00612Q8N6U2 182 aa6.41□□□□□ -1.38
TDP1-202ENST00000393452 A0A0J9YXY3 114 aa6.4□□□□□ -1.38
TDP1-202ENST00000393452 TMEM238C9JI98 176 aa6.4□□□□□ -1.38
TDP1-202ENST00000393452 CRLF1O75462 422 aa6.4□□□□□ -1.38
TDP1-202ENST00000393452 FHL2Q14192 279 aa6.4□□□□□ -1.38
TDP1-202ENST00000393452 KIR2DL5BQ8NHK3 375 aa6.4□□□□□ -1.38
TDP1-202ENST00000393452 GEMIN7Q9H840 131 aaKnown RBP6.4□□□□□ -1.38
TDP1-202ENST00000393452 CFC1BP0CG36 223 aa6.4□□□□□ -1.39
TDP1-202ENST00000393452 CFC1P0CG37 223 aa6.4□□□□□ -1.39
TDP1-202ENST00000393452 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.4□□□□□ -1.39
TDP1-202ENST00000393452 LITAFQ99732 161 aa6.4□□□□□ -1.39
TDP1-202ENST00000393452 CITED1Q99966 193 aa6.4□□□□□ -1.39
TDP1-202ENST00000393452 PGPEP1Q9NXJ5 209 aa6.4□□□□□ -1.39
TDP1-202ENST00000393452 CDKN2A-AS1Q9UH64 79 aa6.4□□□□□ -1.39
TDP1-202ENST00000393452 SMAGPQ0VAQ4 97 aa6.39□□□□□ -1.39
TDP1-202ENST00000393452 LINC00242Q5T6M2 205 aa6.39□□□□□ -1.39
TDP1-202ENST00000393452 CDC42SE2Q9NRR3 84 aa6.39□□□□□ -1.39
TDP1-202ENST00000393452 F8P00451 2351 aa6.39□□□□□ -1.39
TDP1-202ENST00000393452 TRGV4A0A0C4DH28 118 aa6.39□□□□□ -1.39
TDP1-202ENST00000393452 LOC100131303A0A0U1RQF7 123 aa6.39□□□□□ -1.39
TDP1-202ENST00000393452 SMIM9A6NGZ8 99 aa6.39□□□□□ -1.39
TDP1-202ENST00000393452 H7C423 109 aa6.39□□□□□ -1.39
TDP1-202ENST00000393452 SPINK8P0C7L1 97 aa6.39□□□□□ -1.39
TDP1-202ENST00000393452 HERVK_113P63121 156 aa6.39□□□□□ -1.39
TDP1-202ENST00000393452 ZFAND6Q6FIF0 208 aa6.39□□□□□ -1.39
TDP1-202ENST00000393452 TMEM243Q9BU79 118 aa6.39□□□□□ -1.39
TDP1-202ENST00000393452 NDUFA12Q9UI09 145 aa6.39□□□□□ -1.39
TDP1-202ENST00000393452 X6R8D5 127 aa6.39□□□□□ -1.39
TDP1-202ENST00000393452 APOMO95445 188 aa6.38□□□□□ -1.39
TDP1-202ENST00000393452 TSPAN13O95857 204 aa6.38□□□□□ -1.39
TDP1-202ENST00000393452 COX6A2Q02221 97 aa6.38□□□□□ -1.39
TDP1-202ENST00000393452 IGLV5-39A0A0G2JS06 123 aa6.38□□□□□ -1.39
TDP1-202ENST00000393452 G3V4G9 280 aa6.38□□□□□ -1.39
TDP1-202ENST00000393452 A4D1N5 150 aa6.37□□□□□ -1.39
TDP1-202ENST00000393452 A8MZ25 164 aa6.37□□□□□ -1.39
TDP1-202ENST00000393452 EIF4EBP3O60516 100 aaPredicted RBP6.37□□□□□ -1.39
TDP1-202ENST00000393452 RPL24P83731 157 aaKnown RBP6.37□□□□□ -1.39
TDP1-202ENST00000393452 TMEM101Q96IK0 257 aa6.37□□□□□ -1.39
TDP1-202ENST00000393452 VWFP04275 2813 aa6.37□□□□□ -1.39
TDP1-202ENST00000393452 MUSTN1Q8IVN3 82 aa6.37□□□□□ -1.39
TDP1-202ENST00000393452 SPANXDQ9BXN6 97 aa6.37□□□□□ -1.39
TDP1-202ENST00000393452 SPANXCQ9NY87 97 aa6.37□□□□□ -1.39
TDP1-202ENST00000393452 PRO1854Q9UHT4 67 aa6.37□□□□□ -1.39
TDP1-202ENST00000393452 TRBV6-8A0A0A6YYG3 113 aa6.36□□□□□ -1.39
TDP1-202ENST00000393452 A0A0B4J2C4 111 aa6.36□□□□□ -1.39
TDP1-202ENST00000393452 F8W1H4 67 aa6.36□□□□□ -1.39
TDP1-202ENST00000393452 H3BMG7 143 aa6.36□□□□□ -1.39
TDP1-202ENST00000393452 NDUFA1O15239 70 aa6.36□□□□□ -1.39
TDP1-202ENST00000393452 TRAV13-1A0A0B4J241 112 aa6.36□□□□□ -1.39
TDP1-202ENST00000393452 SMIM1B2RUZ4 78 aa6.36□□□□□ -1.39
TDP1-202ENST00000393452 UBE2L6O14933 153 aa6.36□□□□□ -1.39
TDP1-202ENST00000393452 TIMM17BO60830 172 aa6.36□□□□□ -1.39
TDP1-202ENST00000393452 DEFB130BP0DP73 79 aa6.36□□□□□ -1.39
TDP1-202ENST00000393452 DEFB130AP0DP74 79 aa6.36□□□□□ -1.39
TDP1-202ENST00000393452 ADAMTSL4-AS1Q5T5F5 129 aa6.36□□□□□ -1.39
TDP1-202ENST00000393452 WFDC9Q8NEX5 89 aa6.36□□□□□ -1.39
TDP1-202ENST00000393452 F5H768 121 aa6.35□□□□□ -1.39
TDP1-202ENST00000393452 WIPF1O43516 503 aa6.35□□□□□ -1.39
TDP1-202ENST00000393452 PRO0461Q9UI25 63 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms