RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 RNF183Q96D59 192 aa17.78■□□□□ 0.44
SHOX2-201ENST00000389589 TINCRA0A1B0GVN0 87 aa17.78■□□□□ 0.44
SHOX2-201ENST00000389589 LINC00694P0DN24 101 aa17.78■□□□□ 0.44
SHOX2-201ENST00000389589 RNASE13Q5GAN3 156 aaKnown RBP17.78■□□□□ 0.44
SHOX2-201ENST00000389589 TMEM243Q9BU79 118 aa17.78■□□□□ 0.44
SHOX2-201ENST00000389589 IGHV4-28A0A0C4DH34 117 aa17.77■□□□□ 0.44
SHOX2-201ENST00000389589 H7C423 109 aa17.77■□□□□ 0.44
SHOX2-201ENST00000389589 COX11Q9Y6N1 276 aa17.77■□□□□ 0.44
SHOX2-201ENST00000389589 EGFEM1PQ0D2K5 195 aa17.76■□□□□ 0.43
SHOX2-201ENST00000389589 LEPROTO15243 131 aa17.75■□□□□ 0.43
SHOX2-201ENST00000389589 UBE2L6O14933 153 aa17.75■□□□□ 0.43
SHOX2-201ENST00000389589 Q8NAQ8 132 aa17.75■□□□□ 0.43
SHOX2-201ENST00000389589 J3QQQ9 107 aa17.74■□□□□ 0.43
SHOX2-201ENST00000389589 TAX1BP3O14907 124 aa17.74■□□□□ 0.43
SHOX2-201ENST00000389589 PRO0255Q9UI72 69 aa17.74■□□□□ 0.43
SHOX2-201ENST00000389589 GCSHP23434 173 aa17.73■□□□□ 0.43
SHOX2-201ENST00000389589 UBE2D1P51668 147 aa17.73■□□□□ 0.43
SHOX2-201ENST00000389589 LGALS3P17931 250 aaKnown RBP17.73■□□□□ 0.43
SHOX2-201ENST00000389589 KRTAP10-11P60412 298 aa17.73■□□□□ 0.43
SHOX2-201ENST00000389589 PLEKHB2Q96CS7 222 aa17.73■□□□□ 0.43
SHOX2-201ENST00000389589 TM2D2Q9BX73 214 aa17.73■□□□□ 0.43
SHOX2-201ENST00000389589 CEND1Q8N111 149 aa17.72■□□□□ 0.43
SHOX2-201ENST00000389589 OR5A1Q8NGJ0 315 aa17.72■□□□□ 0.43
SHOX2-201ENST00000389589 A8MZ25 164 aa17.71■□□□□ 0.43
SHOX2-201ENST00000389589 AMMECR1LQ6DCA0 310 aa17.71■□□□□ 0.43
SHOX2-201ENST00000389589 SCGB1D4Q6XE38 83 aa17.71■□□□□ 0.43
SHOX2-201ENST00000389589 NBEAL2Q6ZNJ1 2754 aa17.71■□□□□ 0.43
SHOX2-201ENST00000389589 FBN1P35555 2871 aaKnown RBP17.71■□□□□ 0.43
SHOX2-201ENST00000389589 TSPEAR-AS2P59090 65 aa17.71■□□□□ 0.43
SHOX2-201ENST00000389589 TMEM101Q96IK0 257 aa17.71■□□□□ 0.43
SHOX2-201ENST00000389589 HIST1H4GQ99525 98 aa17.71■□□□□ 0.43
SHOX2-201ENST00000389589 TRBV6-8A0A0A6YYG3 113 aa17.7■□□□□ 0.42
SHOX2-201ENST00000389589 DEFB4AO15263 64 aa17.7■□□□□ 0.42
SHOX2-201ENST00000389589 TIRAPP58753 221 aa17.7■□□□□ 0.42
SHOX2-201ENST00000389589 GEMIN7Q9H840 131 aaKnown RBP17.7■□□□□ 0.42
SHOX2-201ENST00000389589 GYPEP15421 78 aa17.7■□□□□ 0.42
SHOX2-201ENST00000389589 DAD1P61803 113 aa17.7■□□□□ 0.42
SHOX2-201ENST00000389589 Q6ZVH6 145 aa17.69■□□□□ 0.42
SHOX2-201ENST00000389589 CDC42SE2Q9NRR3 84 aa17.69■□□□□ 0.42
SHOX2-201ENST00000389589 FAM19A3Q7Z5A8 133 aa17.68■□□□□ 0.42
SHOX2-201ENST00000389589 H3BRM9 83 aa17.68■□□□□ 0.42
SHOX2-201ENST00000389589 STAB1Q9NY15 2570 aa17.68■□□□□ 0.42
SHOX2-201ENST00000389589 SPART-AS1P0CW21 52 aa17.67■□□□□ 0.42
SHOX2-201ENST00000389589 FXYD2P54710 66 aa17.67■□□□□ 0.42
SHOX2-201ENST00000389589 LINC00469Q8N7U9 141 aa17.67■□□□□ 0.42
SHOX2-201ENST00000389589 ATP6V0E2Q8NHE4 81 aa17.67■□□□□ 0.42
SHOX2-201ENST00000389589 PTTG1IPP53801 180 aa17.67■□□□□ 0.42
SHOX2-201ENST00000389589 IGLV5-45A0A087WSX0 123 aa17.66■□□□□ 0.42
SHOX2-201ENST00000389589 IGHV1-58A0A0C4DH39 117 aa17.65■□□□□ 0.42
SHOX2-201ENST00000389589 PAX4O43316 350 aa17.65■□□□□ 0.42
SHOX2-201ENST00000389589 HERVK_113P63121 156 aa17.65■□□□□ 0.42
SHOX2-201ENST00000389589 IGHV3-30-3P0DP02 117 aa17.65■□□□□ 0.42
SHOX2-201ENST00000389589 IGHV3-64A0A075B6Q5 118 aa17.64■□□□□ 0.41
SHOX2-201ENST00000389589 A0A0J9YY99 117 aa17.64■□□□□ 0.41
SHOX2-201ENST00000389589 ATP5G1P05496 136 aa17.64■□□□□ 0.41
SHOX2-201ENST00000389589 CELA1Q9UNI1 258 aa17.63■□□□□ 0.41
SHOX2-201ENST00000389589 TEX48A0A1B0GUV7 120 aa17.63■□□□□ 0.41
SHOX2-201ENST00000389589 SMIM13P0DJ93 91 aa17.63■□□□□ 0.41
SHOX2-201ENST00000389589 CMYA5Q8N3K9 4069 aa17.63■□□□□ 0.41
SHOX2-201ENST00000389589 LINC00242Q5T6M2 205 aa17.62■□□□□ 0.41
SHOX2-201ENST00000389589 CHCHD5Q9BSY4 110 aa17.62■□□□□ 0.41
SHOX2-201ENST00000389589 GAGE6Q13070 117 aa17.62■□□□□ 0.41
SHOX2-201ENST00000389589 VSIG2Q96IQ7 327 aa17.62■□□□□ 0.41
SHOX2-201ENST00000389589 SPANXB1Q9NS25 103 aaPredicted RBP17.62■□□□□ 0.41
SHOX2-201ENST00000389589 SRSF9Q13242 221 aaKnown RBP eCLIP17.61■□□□□ 0.41
SHOX2-201ENST00000389589 CDKN2A-AS1Q9UH64 79 aa17.61■□□□□ 0.41
SHOX2-201ENST00000389589 K7EP13 123 aa17.6■□□□□ 0.41
SHOX2-201ENST00000389589 MAST4O15021 2626 aa17.6■□□□□ 0.41
SHOX2-201ENST00000389589 TRAV8-3A0A0A6YYJ7 113 aa17.6■□□□□ 0.41
SHOX2-201ENST00000389589 TRAV13-1A0A0B4J241 112 aa17.59■□□□□ 0.41
SHOX2-201ENST00000389589 C9orf118A6NHY6 69 aa17.59■□□□□ 0.41
SHOX2-201ENST00000389589 SPINK8P0C7L1 97 aa17.59■□□□□ 0.41
SHOX2-201ENST00000389589 COX6A2Q02221 97 aa17.58■□□□□ 0.4
SHOX2-201ENST00000389589 NHP2Q9NX24 153 aaKnown RBP17.58■□□□□ 0.4
SHOX2-201ENST00000389589 VAMP3Q15836 100 aa17.57■□□□□ 0.4
SHOX2-201ENST00000389589 TMEM238LA0A1B0GVL6 79 aa17.56■□□□□ 0.4
SHOX2-201ENST00000389589 A6NJY4 79 aa17.56■□□□□ 0.4
SHOX2-201ENST00000389589 G3V4G9 280 aa17.56■□□□□ 0.4
SHOX2-201ENST00000389589 F5H768 121 aa17.55■□□□□ 0.4
SHOX2-201ENST00000389589 RAB37Q96AX2 223 aa17.55■□□□□ 0.4
SHOX2-201ENST00000389589 TRAV26-1A0A087WT03 109 aa17.54■□□□□ 0.4
SHOX2-201ENST00000389589 UBE2V1Q13404 147 aa17.54■□□□□ 0.4
SHOX2-201ENST00000389589 ZFAND6Q6FIF0 208 aa17.53■□□□□ 0.4
SHOX2-201ENST00000389589 C10orf126Q8N4M7 172 aa17.53■□□□□ 0.4
SHOX2-201ENST00000389589 NDUFA12Q9UI09 145 aa17.53■□□□□ 0.4
SHOX2-201ENST00000389589 IGLV4-60A0A075B6I1 120 aa17.52■□□□□ 0.4
SHOX2-201ENST00000389589 C12orf74Q32Q52 190 aa17.52■□□□□ 0.4
SHOX2-201ENST00000389589 SAMD5Q5TGI4 173 aa17.52■□□□□ 0.4
SHOX2-201ENST00000389589 PKD1L1Q8TDX9 2849 aa17.52■□□□□ 0.4
SHOX2-201ENST00000389589 IGLV5-39A0A0G2JS06 123 aa17.52■□□□□ 0.39
SHOX2-201ENST00000389589 A0A0J9YXY3 114 aa17.52■□□□□ 0.39
SHOX2-201ENST00000389589 A0A1B0GWB2 263 aa17.52■□□□□ 0.39
SHOX2-201ENST00000389589 TMEM238C9JI98 176 aa17.52■□□□□ 0.39
SHOX2-201ENST00000389589 A0A1B0GUV1 79 aa17.51■□□□□ 0.39
SHOX2-201ENST00000389589 H3BUT2 72 aa17.51■□□□□ 0.39
SHOX2-201ENST00000389589 K7ERJ3 54 aa17.51■□□□□ 0.39
SHOX2-201ENST00000389589 IGHV3-30P01768 117 aa17.51■□□□□ 0.39
SHOX2-201ENST00000389589 IGHV3-30-5P0DP03 117 aa17.51■□□□□ 0.39
SHOX2-201ENST00000389589 SH2D6Q7Z4S9 175 aa17.51■□□□□ 0.39
SHOX2-201ENST00000389589 A0A096LPF7 62 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms