RNA–Protein interactions for RNA: ENST00000318024.8

USH1C-202, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USH1C, Length 2,237 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-202ENST00000318024 ZNF256Q9Y2P7 627 aaPredicted RBP11.59□□□□□ -0.55
USH1C-202ENST00000318024 TRAV2A0A0B4J234 112 aa11.59□□□□□ -0.55
USH1C-202ENST00000318024 TRAV12-3A0A0B4J271 114 aa11.59□□□□□ -0.55
USH1C-202ENST00000318024 DEFB114Q30KQ6 69 aa11.59□□□□□ -0.55
USH1C-202ENST00000318024 ANAPC13Q9BS18 74 aa11.59□□□□□ -0.55
USH1C-202ENST00000318024 IGLV4-3A0A075B6K6 122 aa11.58□□□□□ -0.56
USH1C-202ENST00000318024 A0A0J9YXY3 114 aa11.58□□□□□ -0.56
USH1C-202ENST00000318024 TRBV30A0A0K0K1B3 111 aa11.58□□□□□ -0.56
USH1C-202ENST00000318024 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.58□□□□□ -0.56
USH1C-202ENST00000318024 SS18L2Q9UHA2 77 aa11.58□□□□□ -0.56
USH1C-202ENST00000318024 NTN5Q8WTR8 489 aaPredicted RBP11.58□□□□□ -0.56
USH1C-202ENST00000318024 ODF3Q96PU9 254 aa11.58□□□□□ -0.56
USH1C-202ENST00000318024 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.57□□□□□ -0.56
USH1C-202ENST00000318024 A0A0J9YXV3 536 aa11.57□□□□□ -0.56
USH1C-202ENST00000318024 ATXN8Q156A1 80 aa11.56□□□□□ -0.56
USH1C-202ENST00000318024 TRAV4A0A0B4J268 109 aa11.56□□□□□ -0.56
USH1C-202ENST00000318024 FAM74A4Q5TZK3 123 aa11.56□□□□□ -0.56
USH1C-202ENST00000318024 Q6Q795 121 aa11.56□□□□□ -0.56
USH1C-202ENST00000318024 ATRQ13535 2644 aa11.55□□□□□ -0.56
USH1C-202ENST00000318024 TRBV10-2A0A0K0K1G8 114 aa11.55□□□□□ -0.56
USH1C-202ENST00000318024 DEFB131AP59861 70 aa11.55□□□□□ -0.56
USH1C-202ENST00000318024 GAGE5Q13069 117 aa11.55□□□□□ -0.56
USH1C-202ENST00000318024 GAGE6Q13070 117 aa11.55□□□□□ -0.56
USH1C-202ENST00000318024 TRRAPQ9Y4A5 3859 aa11.55□□□□□ -0.56
USH1C-202ENST00000318024 VWFP04275 2813 aa11.55□□□□□ -0.56
USH1C-202ENST00000318024 IGHV3-64A0A075B6Q5 118 aa11.55□□□□□ -0.56
USH1C-202ENST00000318024 TRIAP1O43715 76 aa11.55□□□□□ -0.56
USH1C-202ENST00000318024 KNCNA6PVL3 124 aa11.54□□□□□ -0.56
USH1C-202ENST00000318024 H7C2G1 150 aa11.54□□□□□ -0.56
USH1C-202ENST00000318024 I3L3M4 83 aa11.54□□□□□ -0.56
USH1C-202ENST00000318024 IGHV3-30-3P0DP02 117 aa11.54□□□□□ -0.56
USH1C-202ENST00000318024 MRPS36P82909 103 aaKnown RBP11.54□□□□□ -0.56
USH1C-202ENST00000318024 ZNF56Q15929 161 aa11.54□□□□□ -0.56
USH1C-202ENST00000318024 TEX49A0A1B0GTD5 131 aa11.53□□□□□ -0.56
USH1C-202ENST00000318024 NDUFV3P56181 108 aaKnown RBP11.53□□□□□ -0.56
USH1C-202ENST00000318024 PYGO1Q9Y3Y4 419 aa11.53□□□□□ -0.56
USH1C-202ENST00000318024 TRAV12-2A0A075B6T6 113 aa11.52□□□□□ -0.56
USH1C-202ENST00000318024 GAGE2BQ13066 116 aa11.52□□□□□ -0.56
USH1C-202ENST00000318024 GAGE2EQ4V326 116 aa11.52□□□□□ -0.56
USH1C-202ENST00000318024 SPANXDQ9BXN6 97 aa11.52□□□□□ -0.56
USH1C-202ENST00000318024 EDA2RQ9HAV5 297 aa11.52□□□□□ -0.56
USH1C-202ENST00000318024 SPANXCQ9NY87 97 aa11.52□□□□□ -0.56
USH1C-202ENST00000318024 GAGE2DQ9UEU5 116 aa11.52□□□□□ -0.56
USH1C-202ENST00000318024 PF4P02776 101 aa11.51□□□□□ -0.57
USH1C-202ENST00000318024 ADAMTSL4-AS1Q5T5F5 129 aa11.51□□□□□ -0.57
USH1C-202ENST00000318024 IGHV1OR15-1A0A075B7D0 117 aa11.51□□□□□ -0.57
USH1C-202ENST00000318024 SNCGO76070 127 aa11.51□□□□□ -0.57
USH1C-202ENST00000318024 FBN1P35555 2871 aaKnown RBP11.5□□□□□ -0.57
USH1C-202ENST00000318024 H7C423 109 aa11.5□□□□□ -0.57
USH1C-202ENST00000318024 SPINK13Q1W4C9 94 aa11.5□□□□□ -0.57
USH1C-202ENST00000318024 MAP6D1Q9H9H5 199 aa11.5□□□□□ -0.57
USH1C-202ENST00000318024 SPATA3Q8NHX4 192 aa11.5□□□□□ -0.57
USH1C-202ENST00000318024 IGHV1-58A0A0C4DH39 117 aa11.49□□□□□ -0.57
USH1C-202ENST00000318024 Q1RN00 199 aa11.49□□□□□ -0.57
USH1C-202ENST00000318024 ICOSQ9Y6W8 199 aa11.49□□□□□ -0.57
USH1C-202ENST00000318024 TRAV8-3A0A0A6YYJ7 113 aa11.48□□□□□ -0.57
USH1C-202ENST00000318024 H3BMM0 161 aa11.48□□□□□ -0.57
USH1C-202ENST00000318024 DEFB121Q5J5C9 76 aa11.48□□□□□ -0.57
USH1C-202ENST00000318024 UBE2WQ96B02 151 aa11.48□□□□□ -0.57
USH1C-202ENST00000318024 TIMM21Q9BVV7 248 aa11.48□□□□□ -0.57
USH1C-202ENST00000318024 NOTCH3Q9UM47 2321 aa11.48□□□□□ -0.57
USH1C-202ENST00000318024 TRAV8-4A0A0B4J246 113 aa11.48□□□□□ -0.57
USH1C-202ENST00000318024 B5MCH6 92 aa11.48□□□□□ -0.57
USH1C-202ENST00000318024 H3BT86 120 aa11.47□□□□□ -0.57
USH1C-202ENST00000318024 MIAQ16674 131 aa11.47□□□□□ -0.57
USH1C-202ENST00000318024 ODF3L2Q3SX64 289 aa11.47□□□□□ -0.57
USH1C-202ENST00000318024 C15orf53Q8NAA6 179 aa11.47□□□□□ -0.57
USH1C-202ENST00000318024 MAST4O15021 2626 aa11.46□□□□□ -0.57
USH1C-202ENST00000318024 IFITM1P13164 125 aa11.46□□□□□ -0.57
USH1C-202ENST00000318024 LINC00482Q8N8I6 264 aa11.46□□□□□ -0.57
USH1C-202ENST00000318024 TRAV25A0A0B4J276 109 aa11.45□□□□□ -0.58
USH1C-202ENST00000318024 CCDC179H3BU77 68 aa11.45□□□□□ -0.58
USH1C-202ENST00000318024 MRPL23Q16540 153 aaKnown RBP11.45□□□□□ -0.58
USH1C-202ENST00000318024 C2orf82Q6UX34 121 aa11.45□□□□□ -0.58
USH1C-202ENST00000318024 VSIG2Q96IQ7 327 aa11.45□□□□□ -0.58
USH1C-202ENST00000318024 NDUFA12Q9UI09 145 aa11.45□□□□□ -0.58
USH1C-202ENST00000318024 NACAE9PAV3 2078 aa11.45□□□□□ -0.58
USH1C-202ENST00000318024 RBMY1BA6NDE4 496 aaKnown RBP11.45□□□□□ -0.58
USH1C-202ENST00000318024 RBMY1EA6NEQ0 496 aaKnown RBP11.45□□□□□ -0.58
USH1C-202ENST00000318024 LST1O00453 97 aa11.45□□□□□ -0.58
USH1C-202ENST00000318024 IGLV1-51P01701 117 aa11.45□□□□□ -0.58
USH1C-202ENST00000318024 RBMY1DP0C7P1 496 aaKnown RBP11.45□□□□□ -0.58
USH1C-202ENST00000318024 TINCRA0A1B0GVN0 87 aa11.44□□□□□ -0.58
USH1C-202ENST00000318024 GAGE12JA6NER3 117 aa11.44□□□□□ -0.58
USH1C-202ENST00000318024 GAGE7O76087 117 aa11.44□□□□□ -0.58
USH1C-202ENST00000318024 GAGE12FP0CL80 117 aa11.44□□□□□ -0.58
USH1C-202ENST00000318024 GAGE12GP0CL81 117 aa11.44□□□□□ -0.58
USH1C-202ENST00000318024 GAGE12IP0CL82 117 aa11.44□□□□□ -0.58
USH1C-202ENST00000318024 GAGE4Q13068 117 aa11.44□□□□□ -0.58
USH1C-202ENST00000318024 CEMP1Q6PRD7 247 aaPredicted RBP11.44□□□□□ -0.58
USH1C-202ENST00000318024 SMIM20Q8N5G0 67 aa11.44□□□□□ -0.58
USH1C-202ENST00000318024 FAM240AA0A1B0GVK7 77 aa11.44□□□□□ -0.58
USH1C-202ENST00000318024 RBMY1A1P0DJD3 496 aaKnown RBP11.44□□□□□ -0.58
USH1C-202ENST00000318024 RBMY1CP0DJD4 496 aa11.44□□□□□ -0.58
USH1C-202ENST00000318024 RBMY1FQ15415 496 aaKnown RBP11.44□□□□□ -0.58
USH1C-202ENST00000318024 KRTAP24-1Q3LI83 254 aa11.44□□□□□ -0.58
USH1C-202ENST00000318024 WFDC10AQ9H1F0 79 aa11.43□□□□□ -0.58
USH1C-202ENST00000318024 PRSS2P07478 247 aa11.43□□□□□ -0.58
USH1C-202ENST00000318024 HTN1P15515 57 aa11.43□□□□□ -0.58
USH1C-202ENST00000318024 TTC32Q5I0X7 151 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 197.7 ms