RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 LYRM9A8MSI8 78 aa11.71□□□□□ -0.53
CCDC40-201ENST00000269318 GCSHP23434 173 aa11.71□□□□□ -0.53
CCDC40-201ENST00000269318 FXYD2P54710 66 aa11.71□□□□□ -0.53
CCDC40-201ENST00000269318 FAM222AQ5U5X8 452 aa11.71□□□□□ -0.53
CCDC40-201ENST00000269318 PRIMA1Q86XR5 153 aa11.71□□□□□ -0.53
CCDC40-201ENST00000269318 TINCRA0A1B0GVN0 87 aa11.7□□□□□ -0.54
CCDC40-201ENST00000269318 UBE2D1P51668 147 aa11.7□□□□□ -0.54
CCDC40-201ENST00000269318 OXLD1Q5BKU9 147 aa11.7□□□□□ -0.54
CCDC40-201ENST00000269318 CEND1Q8N111 149 aa11.7□□□□□ -0.54
CCDC40-201ENST00000269318 PLEKHB2Q96CS7 222 aa11.7□□□□□ -0.54
CCDC40-201ENST00000269318 IGHV4-28A0A0C4DH34 117 aa11.7□□□□□ -0.54
CCDC40-201ENST00000269318 J3QQQ9 107 aa11.7□□□□□ -0.54
CCDC40-201ENST00000269318 K7EP13 123 aa11.7□□□□□ -0.54
CCDC40-201ENST00000269318 LEPROTO15243 131 aa11.7□□□□□ -0.54
CCDC40-201ENST00000269318 DGAT2L7PQ6IED9 249 aa11.7□□□□□ -0.54
CCDC40-201ENST00000269318 SHISA2Q6UWI4 295 aa11.7□□□□□ -0.54
CCDC40-201ENST00000269318 LINC00469Q8N7U9 141 aa11.7□□□□□ -0.54
CCDC40-201ENST00000269318 C3orf56Q8N813 242 aa11.7□□□□□ -0.54
CCDC40-201ENST00000269318 NBEAL2Q6ZNJ1 2754 aa11.7□□□□□ -0.54
CCDC40-201ENST00000269318 Q8NAQ8 132 aa11.69□□□□□ -0.54
CCDC40-201ENST00000269318 KRTAP10-11P60412 298 aa11.68□□□□□ -0.54
CCDC40-201ENST00000269318 TMEM243Q9BU79 118 aa11.68□□□□□ -0.54
CCDC40-201ENST00000269318 H3BRM9 83 aa11.68□□□□□ -0.54
CCDC40-201ENST00000269318 RNF183Q96D59 192 aa11.68□□□□□ -0.54
CCDC40-201ENST00000269318 DEFB4AO15263 64 aa11.67□□□□□ -0.54
CCDC40-201ENST00000269318 MIFP14174 115 aa11.67□□□□□ -0.54
CCDC40-201ENST00000269318 HIST1H4GQ99525 98 aa11.67□□□□□ -0.54
CCDC40-201ENST00000269318 A0A0J9YY99 117 aa11.67□□□□□ -0.54
CCDC40-201ENST00000269318 H7C423 109 aa11.67□□□□□ -0.54
CCDC40-201ENST00000269318 LGALS3P17931 250 aaKnown RBP11.67□□□□□ -0.54
CCDC40-201ENST00000269318 EGFEM1PQ0D2K5 195 aa11.67□□□□□ -0.54
CCDC40-201ENST00000269318 SCGB1D4Q6XE38 83 aa11.67□□□□□ -0.54
CCDC40-201ENST00000269318 CDC42SE2Q9NRR3 84 aa11.67□□□□□ -0.54
CCDC40-201ENST00000269318 IGHV3-64A0A075B6Q5 118 aa11.66□□□□□ -0.54
CCDC40-201ENST00000269318 IGLV5-45A0A087WSX0 123 aa11.66□□□□□ -0.54
CCDC40-201ENST00000269318 TIRAPP58753 221 aa11.66□□□□□ -0.54
CCDC40-201ENST00000269318 SMAGPQ0VAQ4 97 aa11.66□□□□□ -0.54
CCDC40-201ENST00000269318 FAM19A3Q7Z5A8 133 aa11.66□□□□□ -0.54
CCDC40-201ENST00000269318 CMYA5Q8N3K9 4069 aa11.65□□□□□ -0.54
CCDC40-201ENST00000269318 TRBV6-8A0A0A6YYG3 113 aa11.65□□□□□ -0.54
CCDC40-201ENST00000269318 PRO0255Q9UI72 69 aa11.65□□□□□ -0.54
CCDC40-201ENST00000269318 OR5A1Q8NGJ0 315 aa11.65□□□□□ -0.55
CCDC40-201ENST00000269318 IGHV1-58A0A0C4DH39 117 aa11.64□□□□□ -0.55
CCDC40-201ENST00000269318 UBE2L6O14933 153 aa11.64□□□□□ -0.55
CCDC40-201ENST00000269318 IGHV3-30-3P0DP02 117 aa11.64□□□□□ -0.55
CCDC40-201ENST00000269318 GYPEP15421 78 aa11.64□□□□□ -0.55
CCDC40-201ENST00000269318 PTTG1IPP53801 180 aa11.64□□□□□ -0.55
CCDC40-201ENST00000269318 GEMIN7Q9H840 131 aaKnown RBP11.64□□□□□ -0.55
CCDC40-201ENST00000269318 TRAV8-3A0A0A6YYJ7 113 aa11.63□□□□□ -0.55
CCDC40-201ENST00000269318 LINC00242Q5T6M2 205 aa11.63□□□□□ -0.55
CCDC40-201ENST00000269318 CELA1Q9UNI1 258 aa11.63□□□□□ -0.55
CCDC40-201ENST00000269318 C9orf118A6NHY6 69 aa11.63□□□□□ -0.55
CCDC40-201ENST00000269318 COX6A2Q02221 97 aa11.63□□□□□ -0.55
CCDC40-201ENST00000269318 AMMECR1LQ6DCA0 310 aa11.63□□□□□ -0.55
CCDC40-201ENST00000269318 A8MZ25 164 aa11.62□□□□□ -0.55
CCDC40-201ENST00000269318 SMIM13P0DJ93 91 aa11.62□□□□□ -0.55
CCDC40-201ENST00000269318 VSIG2Q96IQ7 327 aa11.62□□□□□ -0.55
CCDC40-201ENST00000269318 SPANXB1Q9NS25 103 aaPredicted RBP11.62□□□□□ -0.55
CCDC40-201ENST00000269318 CDKN2A-AS1Q9UH64 79 aa11.62□□□□□ -0.55
CCDC40-201ENST00000269318 STAB1Q9NY15 2570 aa11.62□□□□□ -0.55
CCDC40-201ENST00000269318 ATP6V0E2Q8NHE4 81 aa11.61□□□□□ -0.55
CCDC40-201ENST00000269318 TMEM101Q96IK0 257 aa11.61□□□□□ -0.55
CCDC40-201ENST00000269318 NHP2Q9NX24 153 aaKnown RBP11.61□□□□□ -0.55
CCDC40-201ENST00000269318 K7ERJ3 54 aa11.61□□□□□ -0.55
CCDC40-201ENST00000269318 SPINK8P0C7L1 97 aa11.61□□□□□ -0.55
CCDC40-201ENST00000269318 DAD1P61803 113 aa11.61□□□□□ -0.55
CCDC40-201ENST00000269318 HERVK_113P63121 156 aa11.61□□□□□ -0.55
CCDC40-201ENST00000269318 UBE2V1Q13404 147 aa11.61□□□□□ -0.55
CCDC40-201ENST00000269318 VAMP3Q15836 100 aa11.61□□□□□ -0.55
CCDC40-201ENST00000269318 RAB37Q96AX2 223 aa11.61□□□□□ -0.55
CCDC40-201ENST00000269318 GAGE6Q13070 117 aa11.6□□□□□ -0.55
CCDC40-201ENST00000269318 C10orf126Q8N4M7 172 aa11.6□□□□□ -0.55
CCDC40-201ENST00000269318 TRAV13-1A0A0B4J241 112 aa11.59□□□□□ -0.55
CCDC40-201ENST00000269318 PAX4O43316 350 aa11.59□□□□□ -0.55
CCDC40-201ENST00000269318 A0A1B0GWB2 263 aa11.59□□□□□ -0.55
CCDC40-201ENST00000269318 CCL25O15444 150 aa11.59□□□□□ -0.55
CCDC40-201ENST00000269318 SPART-AS1P0CW21 52 aa11.59□□□□□ -0.55
CCDC40-201ENST00000269318 SRSF9Q13242 221 aaKnown RBP eCLIP11.59□□□□□ -0.55
CCDC40-201ENST00000269318 CHCHD5Q9BSY4 110 aa11.59□□□□□ -0.55
CCDC40-201ENST00000269318 H3BUT2 72 aa11.58□□□□□ -0.56
CCDC40-201ENST00000269318 C12orf74Q32Q52 190 aa11.58□□□□□ -0.56
CCDC40-201ENST00000269318 IGLV4-60A0A075B6I1 120 aa11.58□□□□□ -0.56
CCDC40-201ENST00000269318 IGHV3-30P01768 117 aa11.58□□□□□ -0.56
CCDC40-201ENST00000269318 ATP5G1P05496 136 aa11.58□□□□□ -0.56
CCDC40-201ENST00000269318 IGHV3-30-5P0DP03 117 aa11.58□□□□□ -0.56
CCDC40-201ENST00000269318 NAA38Q9BRA0 125 aaKnown RBP11.58□□□□□ -0.56
CCDC40-201ENST00000269318 PKD1L1Q8TDX9 2849 aa11.57□□□□□ -0.56
CCDC40-201ENST00000269318 A0A0J9YXY3 114 aa11.57□□□□□ -0.56
CCDC40-201ENST00000269318 DNAH3Q8TD57 4116 aa11.57□□□□□ -0.56
CCDC40-201ENST00000269318 IGLV5-39A0A0G2JS06 123 aa11.56□□□□□ -0.56
CCDC40-201ENST00000269318 ZFAND6Q6FIF0 208 aa11.56□□□□□ -0.56
CCDC40-201ENST00000269318 NDUFA12Q9UI09 145 aa11.56□□□□□ -0.56
CCDC40-201ENST00000269318 F5H768 121 aa11.55□□□□□ -0.56
CCDC40-201ENST00000269318 G3V4G9 280 aa11.55□□□□□ -0.56
CCDC40-201ENST00000269318 ANK2Q01484 3957 aa11.54□□□□□ -0.56
CCDC40-201ENST00000269318 A0A096LPF7 62 aa11.54□□□□□ -0.56
CCDC40-201ENST00000269318 SMIM1B2RUZ4 78 aa11.54□□□□□ -0.56
CCDC40-201ENST00000269318 LITAFQ99732 161 aa11.54□□□□□ -0.56
CCDC40-201ENST00000269318 TRAV26-1A0A087WT03 109 aa11.54□□□□□ -0.56
CCDC40-201ENST00000269318 TMEM238LA0A1B0GVL6 79 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms