RNA–Protein interactions for RNA: YPL177C

CUP9, Transcript of Homeodomain-containing transcriptional repressor, yeast

Gene CUP9, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CUP9	YPL177C	YEF3	P16521	1044 aa	Known RBP	4.23	□□□□□ -1.73
CUP9	YPL177C	SDS22	P36047	338 aa		4.23	□□□□□ -1.73
CUP9	YPL177C	SSP120	P39931	234 aa	Known RBP	4.23	□□□□□ -1.73
CUP9	YPL177C	IMA5	P40884	581 aa		4.23	□□□□□ -1.73
CUP9	YPL177C	THI6	P41835	540 aa		4.23	□□□□□ -1.73
CUP9	YPL177C	BUD17	P53727	317 aa		4.23	□□□□□ -1.73
CUP9	YPL177C	DAK1	P54838	584 aa	Known RBP	4.23	□□□□□ -1.73
CUP9	YPL177C	NGL2	Q03264	515 aa	Known RBP	4.23	□□□□□ -1.73
CUP9	YPL177C	TDA9	Q04545	1251 aa		4.23	□□□□□ -1.73
CUP9	YPL177C	YOL114C	Q12322	202 aa		4.23	□□□□□ -1.73
CUP9	YPL177C	TPK2	P06245	380 aa		4.22	□□□□□ -1.73
CUP9	YPL177C	CNE1	P27825	502 aa		4.22	□□□□□ -1.73
CUP9	YPL177C	DSS4	P32601	143 aa		4.22	□□□□□ -1.73
CUP9	YPL177C	YKL133C	P36066	463 aa		4.22	□□□□□ -1.73
CUP9	YPL177C	HOT13	P36078	116 aa		4.22	□□□□□ -1.73
CUP9	YPL177C	SWD1	P39706	426 aa		4.22	□□□□□ -1.73
CUP9	YPL177C	HIS6	P40545	261 aa		4.22	□□□□□ -1.73
CUP9	YPL177C	PIP2	P52960	996 aa		4.22	□□□□□ -1.73
CUP9	YPL177C	ACS1	Q01574	713 aa		4.22	□□□□□ -1.73
CUP9	YPL177C	MLC2	Q06580	163 aa		4.22	□□□□□ -1.73
CUP9	YPL177C	GEP3	Q08622	556 aa		4.22	□□□□□ -1.73
CUP9	YPL177C	ATP4	P05626	244 aa		4.21	□□□□□ -1.74
CUP9	YPL177C	CAP1	P28495	268 aa	Known RBP	4.21	□□□□□ -1.74
CUP9	YPL177C	GSM1	P42950	618 aa		4.21	□□□□□ -1.74
CUP9	YPL177C	MAD3	P47074	515 aa		4.21	□□□□□ -1.74
CUP9	YPL177C	PUS4	P48567	403 aa	Known RBP	4.21	□□□□□ -1.74
CUP9	YPL177C	YPL216W	Q08964	1102 aa		4.21	□□□□□ -1.74
CUP9	YPL177C	PTP2	P29461	750 aa		4.2	□□□□□ -1.74
CUP9	YPL177C	RRP8	P38961	392 aa	Known RBP	4.2	□□□□□ -1.74
CUP9	YPL177C	ULP2	P40537	1034 aa	Predicted RBP	4.2	□□□□□ -1.74
CUP9	YPL177C	STB2	P46679	850 aa		4.2	□□□□□ -1.74
CUP9	YPL177C	MOT3	P54785	490 aa	Known RBP	4.2	□□□□□ -1.74
CUP9	YPL177C	RPS15	Q01855	142 aa	Known RBP	4.2	□□□□□ -1.74
CUP9	YPL177C	ARG7	Q04728	441 aa		4.2	□□□□□ -1.74
CUP9	YPL177C	TRI1	Q05024	226 aa		4.2	□□□□□ -1.74
CUP9	YPL177C	HIM1	Q06674	414 aa		4.2	□□□□□ -1.74
CUP9	YPL177C	ARP7	Q12406	477 aa		4.2	□□□□□ -1.74
CUP9	YPL177C	BET2	P20133	325 aa		4.19	□□□□□ -1.74
CUP9	YPL177C	TAF5	P38129	798 aa		4.19	□□□□□ -1.74
CUP9	YPL177C	RIM4	P38741	713 aa		4.19	□□□□□ -1.74
CUP9	YPL177C	PIH1	P38768	344 aa		4.19	□□□□□ -1.74
CUP9	YPL177C	QRI7	P43122	407 aa		4.19	□□□□□ -1.74
CUP9	YPL177C	ATG36	P46983	293 aa		4.19	□□□□□ -1.74
CUP9	YPL177C	COS12	P53053	380 aa		4.19	□□□□□ -1.74
CUP9	YPL177C	STP1	Q00947	519 aa		4.19	□□□□□ -1.74
CUP9	YPL177C	YPL068C	Q02749	293 aa		4.19	□□□□□ -1.74
CUP9	YPL177C	USA1	Q03714	838 aa		4.19	□□□□□ -1.74
CUP9	YPL177C	PIF1	P07271	859 aa		4.18	□□□□□ -1.74
CUP9	YPL177C	MSS18	P08593	268 aa		4.18	□□□□□ -1.74
CUP9	YPL177C	CCL1	P37366	393 aa		4.18	□□□□□ -1.74
CUP9	YPL177C	YPT10	P38146	199 aa		4.18	□□□□□ -1.74
CUP9	YPL177C	TAN1	P53072	289 aa	Predicted RBP	4.18	□□□□□ -1.74
CUP9	YPL177C	YGL117W	P53133	265 aa		4.18	□□□□□ -1.74
CUP9	YPL177C	TEP1	P53916	434 aa		4.18	□□□□□ -1.74
CUP9	YPL177C	ENT2	Q05785	613 aa		4.18	□□□□□ -1.74
CUP9	YPL177C	ZPS1	Q12512	249 aa		4.18	□□□□□ -1.74
CUP9	YPL177C	LEU2	P04173	364 aa	Predicted RBP	4.17	□□□□□ -1.74
CUP9	YPL177C	RPS7A	P26786	190 aa	Known RBP	4.17	□□□□□ -1.74
CUP9	YPL177C	YHL041W	P38730	149 aa		4.17	□□□□□ -1.74
CUP9	YPL177C	VFA1	P40080	203 aa		4.17	□□□□□ -1.74
CUP9	YPL177C	SAP4	P53036	818 aa		4.17	□□□□□ -1.74
CUP9	YPL177C	CPR8	P53728	308 aa		4.17	□□□□□ -1.74
CUP9	YPL177C	TRS31	Q03337	283 aa		4.17	□□□□□ -1.74
CUP9	YPL177C	YDL073W	Q07454	984 aa		4.17	□□□□□ -1.74
CUP9	YPL177C	BRE1	Q07457	700 aa	Known RBP	4.17	□□□□□ -1.74
CUP9	YPL177C	MRN1	Q08925	612 aa	Known RBP RIP-Chip data	4.17	□□□□□ -1.74	not detected
CUP9	YPL177C	TGS1	Q12052	315 aa		4.17	□□□□□ -1.74
CUP9	YPL177C	CPA2	P03965	1118 aa	Known RBP	4.16	□□□□□ -1.74
CUP9	YPL177C	YPK1	P12688	680 aa	Known RBP	4.16	□□□□□ -1.74
CUP9	YPL177C	PRE2	P30656	287 aa	Known RBP	4.16	□□□□□ -1.74
CUP9	YPL177C	TPM2	P40414	161 aa		4.16	□□□□□ -1.74
CUP9	YPL177C	PSA1	P41940	361 aa	Known RBP	4.16	□□□□□ -1.74
CUP9	YPL177C	POL31	P46957	487 aa		4.16	□□□□□ -1.74
CUP9	YPL177C	COQ6	P53318	479 aa		4.16	□□□□□ -1.74
CUP9	YPL177C	AAD4	Q07747	329 aa		4.16	□□□□□ -1.74
CUP9	YPL177C	RRP6	Q12149	733 aa	Known RBP	4.16	□□□□□ -1.74
CUP9	YPL177C	AI5_ALPHA	Q9ZZX1	630 aa		4.16	□□□□□ -1.74
CUP9	YPL177C	WHI2	P12611	486 aa		4.15	□□□□□ -1.75
CUP9	YPL177C	APA1	P16550	321 aa	Known RBP	4.15	□□□□□ -1.75
CUP9	YPL177C	SEC18	P18759	758 aa	Known RBP	4.15	□□□□□ -1.75
CUP9	YPL177C	RNR3	P21672	869 aa	Known RBP	4.15	□□□□□ -1.75
CUP9	YPL177C	ECM32	P32644	1121 aa	Known RBP	4.15	□□□□□ -1.75
CUP9	YPL177C	RGT1	P32862	1170 aa		4.15	□□□□□ -1.75
CUP9	YPL177C	LOT5	P34234	306 aa		4.15	□□□□□ -1.75
CUP9	YPL177C	APM3	P38153	483 aa		4.15	□□□□□ -1.75
CUP9	YPL177C	YLF2	P38746	405 aa		4.15	□□□□□ -1.75
CUP9	YPL177C	STT3	P39007	718 aa	Known RBP	4.15	□□□□□ -1.75
CUP9	YPL177C	NOP2	P40991	618 aa	Known RBP	4.15	□□□□□ -1.75
CUP9	YPL177C	IDS2	P46958	469 aa		4.15	□□□□□ -1.75
CUP9	YPL177C	CRD1	Q07560	283 aa		4.15	□□□□□ -1.75
CUP9	YPL177C	CTT1	P06115	562 aa		4.14	□□□□□ -1.75
CUP9	YPL177C	AAD3	P25612	363 aa		4.14	□□□□□ -1.75
CUP9	YPL177C	CDC5	P32562	705 aa		4.14	□□□□□ -1.75
CUP9	YPL177C	MEP2	P41948	499 aa		4.14	□□□□□ -1.75
CUP9	YPL177C	RTS3	P53289	263 aa		4.14	□□□□□ -1.75
CUP9	YPL177C	ICL2	Q12031	575 aa		4.14	□□□□□ -1.75
CUP9	YPL177C	PGI1	P12709	554 aa	Known RBP	4.13	□□□□□ -1.75
CUP9	YPL177C	SWI4	P25302	1093 aa	Known RBP	4.13	□□□□□ -1.75
CUP9	YPL177C	MSH1	P25846	959 aa		4.13	□□□□□ -1.75
CUP9	YPL177C	PRP45	P28004	379 aa	Predicted RBP	4.13	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 35.9 ms