RNA–Protein interactions for RNA: YNL016W

PUB1, Transcript of Poly (A)+ RNA-binding protein, yeast

Gene PUB1, Length 1,362 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PUB1	YNL016W	HOT1	Q03213	719 aa		4.22	□□□□□ -1.73
PUB1	YNL016W	HAS1	Q03532	505 aa	Known RBP	4.22	□□□□□ -1.73
PUB1	YNL016W	YMR155W	Q03795	547 aa		4.22	□□□□□ -1.73
PUB1	YNL016W	CSR1	Q06705	408 aa	Known RBP	4.22	□□□□□ -1.73
PUB1	YNL016W	CDC45	Q08032	650 aa		4.22	□□□□□ -1.73
PUB1	YNL016W	ESC8	Q08119	714 aa		4.22	□□□□□ -1.73
PUB1	YNL016W	CWC2	Q12046	339 aa	Predicted RBP	4.22	□□□□□ -1.73
PUB1	YNL016W	YLL058W	Q12198	575 aa		4.22	□□□□□ -1.73
PUB1	YNL016W	DUR1,2	P32528	1835 aa	Known RBP	4.21	□□□□□ -1.74
PUB1	YNL016W	PHO5	P00635	467 aa		4.21	□□□□□ -1.74
PUB1	YNL016W	CDC26	P14724	124 aa		4.21	□□□□□ -1.74
PUB1	YNL016W	GLK1	P17709	500 aa	Known RBP	4.21	□□□□□ -1.74
PUB1	YNL016W	CBP3	P21560	335 aa		4.21	□□□□□ -1.74
PUB1	YNL016W	MCM3	P24279	971 aa	Known RBP	4.21	□□□□□ -1.74
PUB1	YNL016W	ROX1	P25042	368 aa		4.21	□□□□□ -1.74
PUB1	YNL016W	POL4	P25615	582 aa		4.21	□□□□□ -1.74
PUB1	YNL016W	PUP2	P32379	260 aa		4.21	□□□□□ -1.74
PUB1	YNL016W	SAC6	P32599	642 aa	Known RBP	4.21	□□□□□ -1.74
PUB1	YNL016W	PGM1	P33401	570 aa	Known RBP	4.21	□□□□□ -1.74
PUB1	YNL016W	YKR051W	P36142	418 aa		4.21	□□□□□ -1.74
PUB1	YNL016W	ATG14	P38270	344 aa		4.21	□□□□□ -1.74
PUB1	YNL016W	IFA38	P38286	347 aa		4.21	□□□□□ -1.74
PUB1	YNL016W	ARF3	P40994	183 aa	RIP-Chip data	4.21	□□□□□ -1.74	not detected
PUB1	YNL016W	YLR345W	Q06137	509 aa		4.21	□□□□□ -1.74
PUB1	YNL016W	MED7	Q08278	222 aa		4.21	□□□□□ -1.74
PUB1	YNL016W	ACM1	Q08981	209 aa		4.21	□□□□□ -1.74
PUB1	YNL016W	YBR182C-A	Q8TGU6	64 aa		4.21	□□□□□ -1.74
PUB1	YNL016W	TRP3	P00937	484 aa		4.2	□□□□□ -1.74
PUB1	YNL016W	ARG3	P05150	338 aa		4.2	□□□□□ -1.74
PUB1	YNL016W	ACO1	P19414	778 aa	Known RBP RIP-Chip data	4.2	□□□□□ -1.74	not detected
PUB1	YNL016W	REC107	P21651	314 aa		4.2	□□□□□ -1.74
PUB1	YNL016W	HXT4	P32467	576 aa		4.2	□□□□□ -1.74
PUB1	YNL016W	CNS1	P33313	385 aa		4.2	□□□□□ -1.74
PUB1	YNL016W	YKR018C	P36114	725 aa		4.2	□□□□□ -1.74
PUB1	YNL016W	YBR138C	P38277	524 aa		4.2	□□□□□ -1.74
PUB1	YNL016W	NPR3	P38742	1146 aa		4.2	□□□□□ -1.74
PUB1	YNL016W	STT3	P39007	718 aa	Known RBP	4.2	□□□□□ -1.74
PUB1	YNL016W	YAR028W	P39548	234 aa		4.2	□□□□□ -1.74
PUB1	YNL016W	SSP120	P39931	234 aa	Known RBP	4.2	□□□□□ -1.74
PUB1	YNL016W	NPP2	P39997	493 aa		4.2	□□□□□ -1.74
PUB1	YNL016W	YER158C	P40095	573 aa		4.2	□□□□□ -1.74
PUB1	YNL016W	LTP1	P40347	161 aa		4.2	□□□□□ -1.74
PUB1	YNL016W	VID28	P40547	921 aa		4.2	□□□□□ -1.74
PUB1	YNL016W	RLP7	P40693	322 aa	Known RBP	4.2	□□□□□ -1.74
PUB1	YNL016W	YJR039W	P47107	1121 aa		4.2	□□□□□ -1.74
PUB1	YNL016W	PIL1	P53252	339 aa	Known RBP	4.2	□□□□□ -1.74
PUB1	YNL016W	NOG2	P53742	486 aa	Known RBP	4.2	□□□□□ -1.74
PUB1	YNL016W	HOS3	Q02959	697 aa	Known RBP	4.2	□□□□□ -1.74
PUB1	YNL016W	YML119W	Q03208	357 aa		4.2	□□□□□ -1.74
PUB1	YNL016W	TY1A-DR2	Q03964	440 aa	Known RBP	4.2	□□□□□ -1.74
PUB1	YNL016W	SNO4	Q04902	237 aa		4.2	□□□□□ -1.74
PUB1	YNL016W	NGL1	Q08213	363 aa	Known RBP	4.2	□□□□□ -1.74
PUB1	YNL016W	CUE5	Q08412	411 aa	Known RBP	4.2	□□□□□ -1.74
PUB1	YNL016W	HSP33	Q08914	237 aa	Known RBP	4.2	□□□□□ -1.74
PUB1	YNL016W	HSP32	Q08992	237 aa		4.2	□□□□□ -1.74
PUB1	YNL016W	ICL2	Q12031	575 aa		4.2	□□□□□ -1.74
PUB1	YNL016W	CFT2	Q12102	859 aa	Predicted RBP	4.2	□□□□□ -1.74
PUB1	YNL016W	TY3A-G	Q12173	290 aa		4.2	□□□□□ -1.74
PUB1	YNL016W	AHC1	Q12433	566 aa		4.2	□□□□□ -1.74
PUB1	YNL016W	YDR034W-B	Q6Q5X2	51 aa		4.2	□□□□□ -1.74
PUB1	YNL016W	TY3A-I	Q99219	290 aa		4.2	□□□□□ -1.74
PUB1	YNL016W	TOR2	P32600	2474 aa	Known RBP	4.2	□□□□□ -1.74
PUB1	YNL016W	TOR1	P35169	2470 aa		4.19	□□□□□ -1.74
PUB1	YNL016W	GCN4	P03069	281 aa		4.19	□□□□□ -1.74
PUB1	YNL016W	CPA2	P03965	1118 aa	Known RBP	4.19	□□□□□ -1.74
PUB1	YNL016W	PMA1	P05030	918 aa	Known RBP	4.19	□□□□□ -1.74
PUB1	YNL016W	SUP35	P05453	685 aa	Known RBP	4.19	□□□□□ -1.74
PUB1	YNL016W	MET17	P06106	444 aa		4.19	□□□□□ -1.74
PUB1	YNL016W	VAS1	P07806	1104 aa	Known RBP	4.19	□□□□□ -1.74
PUB1	YNL016W	SIR1	P21691	654 aa		4.19	□□□□□ -1.74
PUB1	YNL016W	CLB4	P24871	460 aa		4.19	□□□□□ -1.74
PUB1	YNL016W	RPN2	P32565	945 aa	Known RBP	4.19	□□□□□ -1.74
PUB1	YNL016W	MDL1	P33310	695 aa		4.19	□□□□□ -1.74
PUB1	YNL016W	OCT1	P35999	772 aa		4.19	□□□□□ -1.74
PUB1	YNL016W	UIP5	P36137	443 aa		4.19	□□□□□ -1.74
PUB1	YNL016W	MRPL16	P38064	232 aa		4.19	□□□□□ -1.74
PUB1	YNL016W	QNS1	P38795	714 aa	Known RBP	4.19	□□□□□ -1.74
PUB1	YNL016W	BEM4	P39011	633 aa		4.19	□□□□□ -1.74
PUB1	YNL016W	KHA1	P40309	873 aa		4.19	□□□□□ -1.74
PUB1	YNL016W	SEC28	P40509	296 aa	Known RBP	4.19	□□□□□ -1.74
PUB1	YNL016W	DJP1	P40564	432 aa		4.19	□□□□□ -1.74
PUB1	YNL016W	YFL040W	P43562	540 aa		4.19	□□□□□ -1.74
PUB1	YNL016W	YFH7	P43591	353 aa		4.19	□□□□□ -1.74
PUB1	YNL016W	GCV1	P48015	400 aa		4.19	□□□□□ -1.74
PUB1	YNL016W	NCS2	P53923	493 aa	Predicted RBP	4.19	□□□□□ -1.74
PUB1	YNL016W	CIK1	Q01649	594 aa		4.19	□□□□□ -1.74
PUB1	YNL016W	LRS4	Q04087	347 aa	Known RBP	4.19	□□□□□ -1.74
PUB1	YNL016W	THI22	Q06490	572 aa		4.19	□□□□□ -1.74
PUB1	YNL016W	YLH47	Q06493	454 aa		4.19	□□□□□ -1.74
PUB1	YNL016W	RTT109	Q07794	436 aa		4.19	□□□□□ -1.74
PUB1	YNL016W	MCH5	Q08777	521 aa		4.19	□□□□□ -1.74
PUB1	YNL016W	REX3	Q12090	404 aa		4.19	□□□□□ -1.74
PUB1	YNL016W	HAL9	Q12180	1030 aa		4.19	□□□□□ -1.74
PUB1	YNL016W	RTN2	Q12443	393 aa		4.19	□□□□□ -1.74
PUB1	YNL016W	PAR32	Q12515	295 aa	Known RBP	4.19	□□□□□ -1.74
PUB1	YNL016W	DIF1	O13577	133 aa		4.18	□□□□□ -1.74
PUB1	YNL016W	MIS1	P09440	975 aa	Known RBP	4.18	□□□□□ -1.74
PUB1	YNL016W	RPL19A	P0CX82	189 aa	Known RBP	4.18	□□□□□ -1.74
PUB1	YNL016W	RPL19B	P0CX83	189 aa	Predicted RBP	4.18	□□□□□ -1.74
PUB1	YNL016W	HSF1	P10961	833 aa		4.18	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 14.6 ms