RNA–Protein interactions for RNA: YFR004W

RPN11, Transcript of Metalloprotease subunit of 19S regulatory particle, yeast

Gene RPN11, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPN11	YFR004W	FAA4	P47912	694 aa	Known RBP	6.29	□□□□□ -1.4
RPN11	YFR004W	SAM37	P50110	327 aa		6.29	□□□□□ -1.4
RPN11	YFR004W	SPC98	P53540	846 aa		6.29	□□□□□ -1.4
RPN11	YFR004W	HST3	P53687	447 aa		6.29	□□□□□ -1.4
RPN11	YFR004W	CPR6	P53691	371 aa	Known RBP	6.29	□□□□□ -1.4
RPN11	YFR004W	ISU1	Q03020	165 aa		6.29	□□□□□ -1.4
RPN11	YFR004W	YMR187C	Q03236	431 aa		6.29	□□□□□ -1.4
RPN11	YFR004W	YPQ2	Q06328	317 aa		6.29	□□□□□ -1.4
RPN11	YFR004W	REC8	Q12188	680 aa		6.29	□□□□□ -1.4
RPN11	YFR004W	CAP1	P28495	268 aa	Known RBP	6.28	□□□□□ -1.4
RPN11	YFR004W	DBF4	P32325	704 aa		6.28	□□□□□ -1.4
RPN11	YFR004W	PLC1	P32383	869 aa		6.28	□□□□□ -1.4
RPN11	YFR004W	POL12	P38121	705 aa	Predicted RBP	6.28	□□□□□ -1.4
RPN11	YFR004W	NMD3	P38861	518 aa	Known RBP	6.28	□□□□□ -1.4
RPN11	YFR004W	SAK1	P38990	1142 aa		6.28	□□□□□ -1.4
RPN11	YFR004W	SPC72	P39723	622 aa		6.28	□□□□□ -1.4
RPN11	YFR004W	SMX2	P40204	77 aa	Known RBP	6.28	□□□□□ -1.4
RPN11	YFR004W	HSH155	P49955	971 aa	Known RBP	6.28	□□□□□ -1.4
RPN11	YFR004W	SUT1	P53032	299 aa	Known RBP	6.28	□□□□□ -1.4
RPN11	YFR004W	STP1	Q00947	519 aa		6.28	□□□□□ -1.4
RPN11	YFR004W	TRS130	Q03660	1102 aa		6.28	□□□□□ -1.4
RPN11	YFR004W	YDR222W	Q04925	415 aa		6.28	□□□□□ -1.4
RPN11	YFR004W	YDR338C	Q05497	695 aa		6.28	□□□□□ -1.4
RPN11	YFR004W	RGA2	Q06407	1009 aa		6.28	□□□□□ -1.4
RPN11	YFR004W	PDH1	Q12428	516 aa	Known RBP	6.28	□□□□□ -1.4
RPN11	YFR004W	SEY1	Q99287	776 aa		6.28	□□□□□ -1.4
RPN11	YFR004W	GAL80	P04387	435 aa		6.27	□□□□□ -1.41
RPN11	YFR004W	ADH4	P10127	382 aa		6.27	□□□□□ -1.41
RPN11	YFR004W	MCM1	P11746	286 aa		6.27	□□□□□ -1.41
RPN11	YFR004W	PRP16	P15938	1071 aa	Predicted RBP	6.27	□□□□□ -1.41
RPN11	YFR004W	IME1	P21190	360 aa		6.27	□□□□□ -1.41
RPN11	YFR004W	PUF4	P25339	888 aa	Known RBP RIP-Chip data	6.27	□□□□□ -1.41	not detected
RPN11	YFR004W	ILV6	P25605	309 aa	Known RBP	6.27	□□□□□ -1.41
RPN11	YFR004W	GYP6	P32806	458 aa		6.27	□□□□□ -1.41
RPN11	YFR004W	YBL055C	P34220	418 aa	Predicted RBP	6.27	□□□□□ -1.41
RPN11	YFR004W	DUG2	P38149	878 aa		6.27	□□□□□ -1.41
RPN11	YFR004W	MMS4	P38257	691 aa		6.27	□□□□□ -1.41
RPN11	YFR004W	MSG5	P38590	489 aa		6.27	□□□□□ -1.41
RPN11	YFR004W	FAA3	P39002	694 aa		6.27	□□□□□ -1.41
RPN11	YFR004W	END3	P39013	349 aa		6.27	□□□□□ -1.41
RPN11	YFR004W	MRX1	P40050	688 aa		6.27	□□□□□ -1.41
RPN11	YFR004W	SIP5	P40210	489 aa	Known RBP	6.27	□□□□□ -1.41
RPN11	YFR004W	INA22	P40576	216 aa		6.27	□□□□□ -1.41
RPN11	YFR004W	PXA1	P41909	870 aa		6.27	□□□□□ -1.41
RPN11	YFR004W	DAS1	P47005	663 aa		6.27	□□□□□ -1.41
RPN11	YFR004W	CPR7	P47103	393 aa		6.27	□□□□□ -1.41
RPN11	YFR004W	STB4	P50104	949 aa		6.27	□□□□□ -1.41
RPN11	YFR004W	SHE10	P53075	577 aa		6.27	□□□□□ -1.41
RPN11	YFR004W	YGR111W	P53265	400 aa		6.27	□□□□□ -1.41
RPN11	YFR004W	YNR061C	P53747	219 aa		6.27	□□□□□ -1.41
RPN11	YFR004W	CDC53	Q12018	815 aa	Known RBP	6.27	□□□□□ -1.41
RPN11	YFR004W	SPO16	P17122	198 aa		6.26	□□□□□ -1.41
RPN11	YFR004W	VMA4	P22203	233 aa	Known RBP	6.26	□□□□□ -1.41
RPN11	YFR004W	YCR051W	P25631	222 aa		6.26	□□□□□ -1.41
RPN11	YFR004W	PET112	P33893	541 aa		6.26	□□□□□ -1.41
RPN11	YFR004W	YSW1	P38280	609 aa		6.26	□□□□□ -1.41
RPN11	YFR004W	VHC1	P38329	1120 aa		6.26	□□□□□ -1.41
RPN11	YFR004W	SFB3	P38810	929 aa		6.26	□□□□□ -1.41
RPN11	YFR004W	GYP8	P43570	497 aa		6.26	□□□□□ -1.41
RPN11	YFR004W	TAF1	P46677	1066 aa		6.26	□□□□□ -1.41
RPN11	YFR004W	PSP1	P50896	841 aa	Known RBP	6.26	□□□□□ -1.41
RPN11	YFR004W	RPA49	Q01080	415 aa	Predicted RBP	6.26	□□□□□ -1.41
RPN11	YFR004W	MTG1	Q03151	367 aa	Predicted RBP	6.26	□□□□□ -1.41
RPN11	YFR004W	CWC21	Q03375	135 aa	Known RBP	6.26	□□□□□ -1.41
RPN11	YFR004W	UFO1	Q04511	668 aa		6.26	□□□□□ -1.41
RPN11	YFR004W	TAF9	Q05027	157 aa		6.26	□□□□□ -1.41
RPN11	YFR004W	LEA1	Q08963	238 aa	Predicted RBP	6.26	□□□□□ -1.41
RPN11	YFR004W	WTM2	Q12206	467 aa		6.26	□□□□□ -1.41
RPN11	YFR004W	MPD2	Q99316	277 aa		6.26	□□□□□ -1.41
RPN11	YFR004W	RPB2	P08518	1224 aa	Known RBP	6.25	□□□□□ -1.41
RPN11	YFR004W	RPL4A	P10664	362 aa	Known RBP	6.25	□□□□□ -1.41
RPN11	YFR004W	VMA3	P25515	160 aa		6.25	□□□□□ -1.41
RPN11	YFR004W	PRR1	P28708	518 aa		6.25	□□□□□ -1.41
RPN11	YFR004W	SWI3	P32591	825 aa		6.25	□□□□□ -1.41
RPN11	YFR004W	TRM2	P33753	639 aa		6.25	□□□□□ -1.41
RPN11	YFR004W	SQT1	P35184	431 aa		6.25	□□□□□ -1.41
RPN11	YFR004W	CSG2	P35206	410 aa		6.25	□□□□□ -1.41
RPN11	YFR004W	YBR062C	P38239	180 aa		6.25	□□□□□ -1.41
RPN11	YFR004W	CBR1	P38626	284 aa	Known RBP	6.25	□□□□□ -1.41
RPN11	YFR004W	MMS21	P38632	267 aa		6.25	□□□□□ -1.41
RPN11	YFR004W	NEM1	P38757	446 aa		6.25	□□□□□ -1.41
RPN11	YFR004W	NPP2	P39997	493 aa		6.25	□□□□□ -1.41
RPN11	YFR004W	ASG1	P40467	964 aa		6.25	□□□□□ -1.41
RPN11	YFR004W	POL31	P46957	487 aa		6.25	□□□□□ -1.41
RPN11	YFR004W	RSM26	P47141	266 aa		6.25	□□□□□ -1.41
RPN11	YFR004W	RPL4B	P49626	362 aa	Known RBP	6.25	□□□□□ -1.41
RPN11	YFR004W	ORC5	P50874	479 aa		6.25	□□□□□ -1.41
RPN11	YFR004W	ZIP2	P53061	704 aa		6.25	□□□□□ -1.41
RPN11	YFR004W	NOG2	P53742	486 aa	Known RBP	6.25	□□□□□ -1.41
RPN11	YFR004W	ATG16	Q03818	150 aa		6.25	□□□□□ -1.41
RPN11	YFR004W	TMN2	Q04562	672 aa		6.25	□□□□□ -1.41
RPN11	YFR004W	IWR1	Q07532	353 aa	Predicted RBP	6.25	□□□□□ -1.41
RPN11	YFR004W	CTF3	Q12748	733 aa		6.25	□□□□□ -1.41
RPN11	YFR004W	STE6	P12866	1290 aa		6.24	□□□□□ -1.41
RPN11	YFR004W	DAT1	P13483	248 aa	Known RBP	6.24	□□□□□ -1.41
RPN11	YFR004W	PMR1	P13586	950 aa		6.24	□□□□□ -1.41
RPN11	YFR004W	CBF1	P17106	351 aa		6.24	□□□□□ -1.41
RPN11	YFR004W	SRV2	P17555	526 aa	Known RBP	6.24	□□□□□ -1.41
RPN11	YFR004W	RNR1	P21524	888 aa	Known RBP	6.24	□□□□□ -1.41
RPN11	YFR004W	ARG1	P22768	420 aa		6.24	□□□□□ -1.41

Retrieved 100 of 5,963 RNA–protein pairs in 14.1 ms