RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP42YDR235W YND1P40009 630 aa1.4□□□□□ -2.19
PRP42YDR235W CIN1P40987 1014 aa1.4□□□□□ -2.19
PRP42YDR235W YNL058CP53947 316 aa1.4□□□□□ -2.19
PRP42YDR235W YMR210WQ03649 449 aa1.4□□□□□ -2.19
PRP42YDR235W YLR281CQ05863 155 aa1.4□□□□□ -2.19
PRP42YDR235W YLR407WQ06070 228 aa1.4□□□□□ -2.19
PRP42YDR235W GIN4Q12263 1142 aa1.4□□□□□ -2.19
PRP42YDR235W YER175W-AQ8TGU4 54 aa1.4□□□□□ -2.19
PRP42YDR235W MRPL4P36517 319 aa1.39□□□□□ -2.19
PRP42YDR235W ECM16Q04217 1267 aaKnown RBP1.39□□□□□ -2.19
PRP42YDR235W HLR1Q04429 423 aa1.39□□□□□ -2.19
PRP42YDR235W YLR352WQ06479 807 aa1.39□□□□□ -2.19
PRP42YDR235W AAC1P04710 309 aa1.38□□□□□ -2.19
PRP42YDR235W SFL1P20134 766 aa1.38□□□□□ -2.19
PRP42YDR235W PRE4P30657 266 aa1.38□□□□□ -2.19
PRP42YDR235W MAL31P38156 614 aa1.38□□□□□ -2.19
PRP42YDR235W CDS1P38221 457 aa1.38□□□□□ -2.19
PRP42YDR235W YEL025CP39991 1188 aa1.38□□□□□ -2.19
PRP42YDR235W FTR1P40088 404 aa1.38□□□□□ -2.19
PRP42YDR235W YPT11P48559 417 aa1.38□□□□□ -2.19
PRP42YDR235W PPN1Q04119 674 aa1.38□□□□□ -2.19
PRP42YDR235W MRN1Q08925 612 aaKnown RBP RIP-Chip data1.38□□□□□ -2.19not detected
PRP42YDR235W SEC18P18759 758 aaKnown RBP1.37□□□□□ -2.19
PRP42YDR235W MSH2P25847 964 aa1.37□□□□□ -2.19
PRP42YDR235W RRT2P38332 387 aa1.37□□□□□ -2.19
PRP42YDR235W CRZ1P53968 678 aa1.37□□□□□ -2.19
PRP42YDR235W USA1Q03714 838 aa1.37□□□□□ -2.19
PRP42YDR235W FMP42Q04991 504 aa1.37□□□□□ -2.19
PRP42YDR235W ECM22Q05958 814 aaPredicted RBP1.37□□□□□ -2.19
PRP42YDR235W PFA4Q12006 378 aa1.37□□□□□ -2.19
PRP42YDR235W GET3Q12154 354 aaKnown RBP1.37□□□□□ -2.19
PRP42YDR235W YOR131CQ12486 218 aa1.37□□□□□ -2.19
PRP42YDR235W RPS17AP02407 136 aaKnown RBP1.37□□□□□ -2.19
PRP42YDR235W SWI6P09959 803 aa1.37□□□□□ -2.19
PRP42YDR235W RPS17BP14127 136 aaKnown RBP1.37□□□□□ -2.19
PRP42YDR235W PBP2P38151 413 aaKnown RBP RIP-Chip data1.37□□□□□ -2.19not detected
PRP42YDR235W YEL068CP39977 110 aa1.37□□□□□ -2.19
PRP42YDR235W PRM2P40534 656 aa1.37□□□□□ -2.19
PRP42YDR235W TAF4P50105 388 aa1.37□□□□□ -2.19
PRP42YDR235W UGO1Q03327 502 aa1.37□□□□□ -2.19
PRP42YDR235W SND1Q04007 877 aa1.37□□□□□ -2.19
PRP42YDR235W GSH2Q08220 491 aa1.37□□□□□ -2.19
PRP42YDR235W GPN2Q08726 347 aaPredicted RBP1.37□□□□□ -2.19
PRP42YDR235W RPL42AP0CX27 106 aaKnown RBP1.36□□□□□ -2.19
PRP42YDR235W RPL42BP0CX28 106 aaKnown RBP1.36□□□□□ -2.19
PRP42YDR235W YPK1P12688 680 aaKnown RBP1.36□□□□□ -2.19
PRP42YDR235W EHT1P38295 451 aa1.36□□□□□ -2.19
PRP42YDR235W BZZ1P38822 633 aa1.36□□□□□ -2.19
PRP42YDR235W NOP15P53927 220 aaPredicted RBP1.36□□□□□ -2.19
PRP42YDR235W RRI1Q12468 440 aa1.36□□□□□ -2.19
PRP42YDR235W CNA1P23287 553 aa1.35□□□□□ -2.19
PRP42YDR235W CPR3P25719 182 aa1.35□□□□□ -2.19
PRP42YDR235W LRO1P40345 661 aa1.35□□□□□ -2.19
PRP42YDR235W NUP82P40368 713 aa1.35□□□□□ -2.19
PRP42YDR235W MKT1P40850 830 aaKnown RBP1.35□□□□□ -2.19
PRP42YDR235W IES1P43579 692 aa1.35□□□□□ -2.19
PRP42YDR235W BFA1P47113 574 aa1.35□□□□□ -2.19
PRP42YDR235W YDL183CP48569 320 aa1.35□□□□□ -2.19
PRP42YDR235W MET13P53128 600 aa1.35□□□□□ -2.19
PRP42YDR235W RPN4Q03465 531 aa1.35□□□□□ -2.19
PRP42YDR235W NSE5Q03718 556 aa1.35□□□□□ -2.19
PRP42YDR235W RAD33Q04231 177 aa1.35□□□□□ -2.19
PRP42YDR235W ARR3Q06598 404 aa1.35□□□□□ -2.19
PRP42YDR235W GUD1Q07729 489 aa1.35□□□□□ -2.19
PRP42YDR235W YLR001CQ07895 862 aa1.35□□□□□ -2.19
PRP42YDR235W YLR125WQ12138 136 aa1.35□□□□□ -2.19
PRP42YDR235W PCK1P10963 549 aa1.34□□□□□ -2.19
PRP42YDR235W PHO8P11491 566 aa1.34□□□□□ -2.19
PRP42YDR235W CDC23P16522 626 aa1.34□□□□□ -2.19
PRP42YDR235W MTC7P32633 139 aa1.34□□□□□ -2.19
PRP42YDR235W RAD26P40352 1085 aa1.34□□□□□ -2.19
PRP42YDR235W BUD6P41697 788 aa1.34□□□□□ -2.19
PRP42YDR235W YNL144CP53907 740 aa1.34□□□□□ -2.19
PRP42YDR235W YCG1Q06680 1035 aa1.34□□□□□ -2.19
PRP42YDR235W YOR389WQ08912 624 aa1.34□□□□□ -2.19
PRP42YDR235W AIM41Q12032 185 aa1.34□□□□□ -2.19
PRP42YDR235W CSR2Q12734 1121 aa1.34□□□□□ -2.19
PRP42YDR235W UBP7P40453 1071 aa1.33□□□□□ -2.2
PRP42YDR235W CIR1P42940 261 aa1.33□□□□□ -2.2
PRP42YDR235W RET2P43621 546 aa1.33□□□□□ -2.2
PRP42YDR235W NTG2Q08214 380 aa1.33□□□□□ -2.2
PRP42YDR235W CRT10Q08226 957 aa1.33□□□□□ -2.2
PRP42YDR235W YOL098CQ12496 1037 aa1.33□□□□□ -2.2
PRP42YDR235W LDB16P25587 256 aa1.33□□□□□ -2.2
PRP42YDR235W THI4P32318 326 aa1.33□□□□□ -2.2
PRP42YDR235W GSH1P32477 678 aa1.33□□□□□ -2.2
PRP42YDR235W YKL091CP33324 310 aaKnown RBP1.33□□□□□ -2.2
PRP42YDR235W TDA3P38758 523 aa1.33□□□□□ -2.2
PRP42YDR235W QRI7P43122 407 aa1.33□□□□□ -2.2
PRP42YDR235W NNF1P47149 201 aa1.33□□□□□ -2.2
PRP42YDR235W YNL092WP53934 400 aa1.33□□□□□ -2.2
PRP42YDR235W MTD1Q02046 320 aaKnown RBP1.33□□□□□ -2.2
PRP42YDR235W TAH18Q12181 623 aa1.33□□□□□ -2.2
PRP42YDR235W RPS21BQ3E754 87 aaKnown RBP1.33□□□□□ -2.2
PRP42YDR235W YML002WP0CF17 737 aa1.32□□□□□ -2.2
PRP42YDR235W HMG2P12684 1045 aa1.32□□□□□ -2.2
PRP42YDR235W GLN4P13188 809 aaKnown RBP1.32□□□□□ -2.2
PRP42YDR235W GDA1P32621 518 aa1.32□□□□□ -2.2
PRP42YDR235W NIC96P34077 839 aa1.32□□□□□ -2.2
PRP42YDR235W YHR033WP38690 423 aa1.32□□□□□ -2.2
Retrieved 100 of 5,963 RNA–protein pairs in 89.2 ms