RNA–Protein interactions for RNA: YDR139C

RUB1, Transcript of Ubiquitin-like protein with similarity to mammalian NEDD8, yeast

Gene RUB1, Length 234 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RUB1	YDR139C	MLC2	Q06580	163 aa		4.25	□□□□□ -1.73
RUB1	YDR139C	RPL7B	Q12213	244 aa	Known RBP	4.25	□□□□□ -1.73
RUB1	YDR139C	NDJ1	Q12366	352 aa		4.25	□□□□□ -1.73
RUB1	YDR139C	AAC1	P04710	309 aa		4.24	□□□□□ -1.73
RUB1	YDR139C	PMA2	P19657	947 aa		4.24	□□□□□ -1.73
RUB1	YDR139C	RNR3	P21672	869 aa	Known RBP	4.24	□□□□□ -1.73
RUB1	YDR139C	PEX2	P32800	271 aa		4.24	□□□□□ -1.73
RUB1	YDR139C	YPT10	P38146	199 aa		4.24	□□□□□ -1.73
RUB1	YDR139C	SDH8	P38345	138 aa		4.24	□□□□□ -1.73
RUB1	YDR139C	STB5	P38699	743 aa		4.24	□□□□□ -1.73
RUB1	YDR139C	VFA1	P40080	203 aa		4.24	□□□□□ -1.73
RUB1	YDR139C	NOP2	P40991	618 aa	Known RBP	4.24	□□□□□ -1.73
RUB1	YDR139C	IDS2	P46958	469 aa		4.24	□□□□□ -1.73
RUB1	YDR139C	ENT2	Q05785	613 aa		4.24	□□□□□ -1.73
RUB1	YDR139C	CRD1	Q07560	283 aa		4.24	□□□□□ -1.73
RUB1	YDR139C	NYV1	Q12255	253 aa		4.24	□□□□□ -1.73
RUB1	YDR139C	YOL114C	Q12322	202 aa		4.24	□□□□□ -1.73
RUB1	YDR139C	YMR084W	A2P2R3	262 aa		4.23	□□□□□ -1.73
RUB1	YDR139C	LEU2	P04173	364 aa	Predicted RBP	4.23	□□□□□ -1.73
RUB1	YDR139C	GAL1	P04385	528 aa		4.23	□□□□□ -1.73
RUB1	YDR139C	CTT1	P06115	562 aa		4.23	□□□□□ -1.73
RUB1	YDR139C	YPK1	P12688	680 aa	Known RBP	4.23	□□□□□ -1.73
RUB1	YDR139C	AAD3	P25612	363 aa		4.23	□□□□□ -1.73
RUB1	YDR139C	PTP2	P29461	750 aa		4.23	□□□□□ -1.73
RUB1	YDR139C	CDC5	P32562	705 aa		4.23	□□□□□ -1.73
RUB1	YDR139C	LGE1	Q02796	332 aa	Known RBP	4.23	□□□□□ -1.73
RUB1	YDR139C	TRS31	Q03337	283 aa		4.23	□□□□□ -1.73
RUB1	YDR139C	YOL057W	Q08225	711 aa		4.23	□□□□□ -1.73
RUB1	YDR139C	CRT10	Q08226	957 aa		4.23	□□□□□ -1.73
RUB1	YDR139C	HEM1	P09950	548 aa	Predicted RBP	4.22	□□□□□ -1.73
RUB1	YDR139C	MRPL9	P31334	269 aa		4.22	□□□□□ -1.73
RUB1	YDR139C	OPT1	P40897	799 aa		4.22	□□□□□ -1.73
RUB1	YDR139C	PIP2	P52960	996 aa		4.22	□□□□□ -1.73
RUB1	YDR139C	ACS1	Q01574	713 aa		4.22	□□□□□ -1.73
RUB1	YDR139C	IOC4	Q04213	475 aa		4.22	□□□□□ -1.73
RUB1	YDR139C	COQ11	Q05892	277 aa		4.22	□□□□□ -1.73
RUB1	YDR139C	AAD4	Q07747	329 aa		4.22	□□□□□ -1.73
RUB1	YDR139C	YNL162W-A	Q3E7A8	72 aa		4.22	□□□□□ -1.73
RUB1	YDR139C	HOM2	P13663	365 aa	Known RBP	4.21	□□□□□ -1.74
RUB1	YDR139C	YEF3	P16521	1044 aa	Known RBP	4.21	□□□□□ -1.74
RUB1	YDR139C	ORC2	P32833	620 aa		4.21	□□□□□ -1.74
RUB1	YDR139C	RRP8	P38961	392 aa	Known RBP	4.21	□□□□□ -1.74
RUB1	YDR139C	HIS6	P40545	261 aa		4.21	□□□□□ -1.74
RUB1	YDR139C	QRI7	P43122	407 aa		4.21	□□□□□ -1.74
RUB1	YDR139C	YFL015C	P43578	164 aa		4.21	□□□□□ -1.74
RUB1	YDR139C	POL31	P46957	487 aa		4.21	□□□□□ -1.74
RUB1	YDR139C	MAD3	P47074	515 aa		4.21	□□□□□ -1.74
RUB1	YDR139C	TEP1	P53916	434 aa		4.21	□□□□□ -1.74
RUB1	YDR139C	WAR1	Q03631	944 aa		4.21	□□□□□ -1.74
RUB1	YDR139C	VPS64	Q03944	604 aa		4.21	□□□□□ -1.74
RUB1	YDR139C	MRI1	Q06489	411 aa	Known RBP	4.21	□□□□□ -1.74
RUB1	YDR139C	OSW1	Q08692	278 aa		4.21	□□□□□ -1.74
RUB1	YDR139C	RPS7A	P26786	190 aa	Known RBP	4.2	□□□□□ -1.74
RUB1	YDR139C	PRE2	P30656	287 aa	Known RBP	4.2	□□□□□ -1.74
RUB1	YDR139C	RPC34	P32910	317 aa		4.2	□□□□□ -1.74
RUB1	YDR139C	LNP1	P38878	278 aa		4.2	□□□□□ -1.74
RUB1	YDR139C	MRN1	Q08925	612 aa	Known RBP RIP-Chip data	4.2	□□□□□ -1.74	not detected
RUB1	YDR139C	RRP6	Q12149	733 aa	Known RBP	4.2	□□□□□ -1.74
RUB1	YDR139C	AI5_ALPHA	Q9ZZX1	630 aa		4.2	□□□□□ -1.74
RUB1	YDR139C	YCR061W	P25639	631 aa		4.19	□□□□□ -1.74
RUB1	YDR139C	APM3	P38153	483 aa		4.19	□□□□□ -1.74
RUB1	YDR139C	TAX4	P47030	604 aa		4.19	□□□□□ -1.74
RUB1	YDR139C	YJL043W	P47053	257 aa		4.19	□□□□□ -1.74
RUB1	YDR139C	YJR008W	P47085	338 aa		4.19	□□□□□ -1.74
RUB1	YDR139C	BRE1	Q07457	700 aa	Known RBP	4.19	□□□□□ -1.74
RUB1	YDR139C	PCL8	Q08966	492 aa		4.19	□□□□□ -1.74
RUB1	YDR139C	ERG11	P10614	530 aa		4.18	□□□□□ -1.74
RUB1	YDR139C	HOT13	P36078	116 aa		4.18	□□□□□ -1.74
RUB1	YDR139C	STT3	P39007	718 aa	Known RBP	4.18	□□□□□ -1.74
RUB1	YDR139C	MAM1	P40065	302 aa		4.18	□□□□□ -1.74
RUB1	YDR139C	RAD26	P40352	1085 aa		4.18	□□□□□ -1.74
RUB1	YDR139C	LAS21	P40367	830 aa		4.18	□□□□□ -1.74
RUB1	YDR139C	PAP2	P53632	584 aa	Known RBP	4.18	□□□□□ -1.74
RUB1	YDR139C	YNL092W	P53934	400 aa		4.18	□□□□□ -1.74
RUB1	YDR139C	AHA1	Q12449	350 aa	Known RBP	4.18	□□□□□ -1.74
RUB1	YDR139C	SEC3	P33332	1336 aa	Known RBP	4.18	□□□□□ -1.74
RUB1	YDR139C	CHO2	P05374	869 aa	Known RBP	4.17	□□□□□ -1.74
RUB1	YDR139C	PIF1	P07271	859 aa		4.17	□□□□□ -1.74
RUB1	YDR139C	MSS18	P08593	268 aa		4.17	□□□□□ -1.74
RUB1	YDR139C	AQY1	P0CD91	305 aa		4.17	□□□□□ -1.74
RUB1	YDR139C	SIR1	P21691	654 aa		4.17	□□□□□ -1.74
RUB1	YDR139C	MSH1	P25846	959 aa		4.17	□□□□□ -1.74
RUB1	YDR139C	FRD1	P32614	470 aa	Known RBP	4.17	□□□□□ -1.74
RUB1	YDR139C	APD1	P38281	316 aa		4.17	□□□□□ -1.74
RUB1	YDR139C	MTG2	P38860	518 aa		4.17	□□□□□ -1.74
RUB1	YDR139C	ARB1	P40024	610 aa	Known RBP	4.17	□□□□□ -1.74
RUB1	YDR139C	VPS27	P40343	622 aa	Known RBP	4.17	□□□□□ -1.74
RUB1	YDR139C	TDA10	P42938	290 aa		4.17	□□□□□ -1.74
RUB1	YDR139C	COG2	P53271	262 aa		4.17	□□□□□ -1.74
RUB1	YDR139C	CRF1	Q04930	467 aa		4.17	□□□□□ -1.74
RUB1	YDR139C	EIS1	Q05050	843 aa	Known RBP	4.17	□□□□□ -1.74
RUB1	YDR139C	THI7	Q05998	598 aa		4.17	□□□□□ -1.74
RUB1	YDR139C	HIM1	Q06674	414 aa		4.17	□□□□□ -1.74
RUB1	YDR139C	AIM6	Q07716	390 aa		4.17	□□□□□ -1.74
RUB1	YDR139C	YER175W-A	Q8TGU4	54 aa		4.17	□□□□□ -1.74
RUB1	YDR139C	GDA1	P32621	518 aa		4.16	□□□□□ -1.74
RUB1	YDR139C	YHL041W	P38730	149 aa		4.16	□□□□□ -1.74
RUB1	YDR139C	EXO1	P39875	702 aa		4.16	□□□□□ -1.74
RUB1	YDR139C	CAB2	P40506	365 aa		4.16	□□□□□ -1.74
RUB1	YDR139C	ESF2	P53743	316 aa	Known RBP	4.16	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 20 ms