RNA–Protein interactions for RNA: ENST00000628857.1

CNOT1-223, Transcript of CCR4-NOT transcription complex subunit 1, human

TSL 5 BASIC

Gene CNOT1, Length 291 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT1-223	ENST00000628857	FAM161B	Q96MY7	647 aa		5.28	□□□□□ -1.56
CNOT1-223	ENST00000628857	KCNF1	Q9H3M0	494 aa		5.28	□□□□□ -1.56
CNOT1-223	ENST00000628857	FAM105A	Q9NUU6	356 aa		5.28	□□□□□ -1.56
CNOT1-223	ENST00000628857	HMX2	A2RU54	273 aa		5.27	□□□□□ -1.57
CNOT1-223	ENST00000628857	CYP27A1	Q02318	531 aa		5.27	□□□□□ -1.57
CNOT1-223	ENST00000628857	KCT2	Q8NC54	265 aa		5.27	□□□□□ -1.57
CNOT1-223	ENST00000628857	FBLIM1	Q8WUP2	373 aa		5.27	□□□□□ -1.57
CNOT1-223	ENST00000628857	ZC3H12C	Q9C0D7	883 aa	Known RBP	5.27	□□□□□ -1.57
CNOT1-223	ENST00000628857	SEMA6C	Q9H3T2	930 aa		5.27	□□□□□ -1.57
CNOT1-223	ENST00000628857	METTL5	Q9NRN9	209 aa	Known RBP	5.27	□□□□□ -1.57
CNOT1-223	ENST00000628857	PCOLCE2	Q9UKZ9	415 aa		5.27	□□□□□ -1.57
CNOT1-223	ENST00000628857	AP4E1	Q9UPM8	1137 aa		5.27	□□□□□ -1.57
CNOT1-223	ENST00000628857	LMNB2	Q03252	620 aa		5.26	□□□□□ -1.57
CNOT1-223	ENST00000628857	RASIP1	Q5U651	963 aa		5.26	□□□□□ -1.57
CNOT1-223	ENST00000628857	HDX	Q7Z353	690 aa		5.26	□□□□□ -1.57
CNOT1-223	ENST00000628857	RELL1	Q8IUW5	271 aa		5.26	□□□□□ -1.57
CNOT1-223	ENST00000628857	GAL3ST3	Q96A11	431 aa		5.26	□□□□□ -1.57
CNOT1-223	ENST00000628857	ACSBG1	Q96GR2	724 aa		5.26	□□□□□ -1.57
CNOT1-223	ENST00000628857	METTL22	Q9BUU2	404 aa	Predicted RBP	5.26	□□□□□ -1.57
CNOT1-223	ENST00000628857	PIDD1	Q9HB75	910 aa		5.26	□□□□□ -1.57
CNOT1-223	ENST00000628857	KCNQ5	Q9NR82	932 aa		5.26	□□□□□ -1.57
CNOT1-223	ENST00000628857	NFIC	P08651	508 aa		5.25	□□□□□ -1.57
CNOT1-223	ENST00000628857	LMNB1	P20700	586 aa		5.25	□□□□□ -1.57
CNOT1-223	ENST00000628857	RXRB	P28702	533 aa		5.25	□□□□□ -1.57
CNOT1-223	ENST00000628857	CAP2	P40123	477 aa		5.25	□□□□□ -1.57
CNOT1-223	ENST00000628857	TTLL4	Q14679	1199 aa		5.25	□□□□□ -1.57
CNOT1-223	ENST00000628857	NFKBIB	Q15653	356 aa		5.25	□□□□□ -1.57
CNOT1-223	ENST00000628857	TSNAXIP1	Q2TAA8	658 aa		5.25	□□□□□ -1.57
CNOT1-223	ENST00000628857	INTS5	Q6P9B9	1019 aa	Known RBP	5.25	□□□□□ -1.57
CNOT1-223	ENST00000628857	CYFIP1	Q7L576	1253 aa		5.25	□□□□□ -1.57
CNOT1-223	ENST00000628857	ERMP1	Q7Z2K6	904 aa		5.25	□□□□□ -1.57
CNOT1-223	ENST00000628857	ZAR1	Q86SH2	424 aa		5.25	□□□□□ -1.57
CNOT1-223	ENST00000628857	ZDHHC13	Q8IUH4	622 aa		5.25	□□□□□ -1.57
CNOT1-223	ENST00000628857	SMYD4	Q8IYR2	804 aa	Predicted RBP	5.25	□□□□□ -1.57
CNOT1-223	ENST00000628857	PHC3	Q8NDX5	983 aa		5.25	□□□□□ -1.57
CNOT1-223	ENST00000628857	TMEM74	Q96NL1	305 aa		5.25	□□□□□ -1.57
CNOT1-223	ENST00000628857	MIR1-1HG	Q9H1L0	117 aa		5.25	□□□□□ -1.57
CNOT1-223	ENST00000628857	PRKAG2	Q9UGJ0	569 aa		5.25	□□□□□ -1.57
CNOT1-223	ENST00000628857	PCDHA4	Q9UN74	947 aa		5.25	□□□□□ -1.57
CNOT1-223	ENST00000628857	ROBO2	Q9HCK4	1378 aa		5.25	□□□□□ -1.57
CNOT1-223	ENST00000628857	GFRA2	O00451	464 aa		5.24	□□□□□ -1.57
CNOT1-223	ENST00000628857	LDLRAD1	Q5T700	205 aa		5.24	□□□□□ -1.57
CNOT1-223	ENST00000628857	MPRIP	Q6WCQ1	1025 aa		5.24	□□□□□ -1.57
CNOT1-223	ENST00000628857	GATA6	Q92908	595 aa		5.24	□□□□□ -1.57
CNOT1-223	ENST00000628857	RHOV	Q96L33	236 aa		5.24	□□□□□ -1.57
CNOT1-223	ENST00000628857	PSMG3-AS1	Q96PY0	264 aa		5.24	□□□□□ -1.57
CNOT1-223	ENST00000628857	C1GALT1	Q9NS00	363 aa		5.24	□□□□□ -1.57
CNOT1-223	ENST00000628857	PRR19	A6NJB7	356 aa		5.23	□□□□□ -1.57
CNOT1-223	ENST00000628857	TFE3	P19532	575 aa	Predicted RBP	5.23	□□□□□ -1.57
CNOT1-223	ENST00000628857	NTF4	P34130	210 aa		5.23	□□□□□ -1.57
CNOT1-223	ENST00000628857	RPL6	Q02878	288 aa	Known RBP	5.23	□□□□□ -1.57
CNOT1-223	ENST00000628857	PTPN11	Q06124	597 aa	Predicted RBP	5.23	□□□□□ -1.57
CNOT1-223	ENST00000628857	CAMK2G	Q13555	558 aa	Predicted RBP	5.23	□□□□□ -1.57
CNOT1-223	ENST00000628857	ZBTB37	Q5TC79	503 aa		5.23	□□□□□ -1.57
CNOT1-223	ENST00000628857	OGFOD3	Q6PK18	319 aa		5.23	□□□□□ -1.57
CNOT1-223	ENST00000628857	ZNF507	Q8TCN5	953 aa		5.23	□□□□□ -1.57
CNOT1-223	ENST00000628857	GATAD2B	Q8WXI9	593 aa		5.23	□□□□□ -1.57
CNOT1-223	ENST00000628857	BACH2	Q9BYV9	841 aa		5.23	□□□□□ -1.57
CNOT1-223	ENST00000628857	WNT10A	Q9GZT5	417 aa		5.23	□□□□□ -1.57
CNOT1-223	ENST00000628857	ATG3	Q9NT62	314 aa		5.23	□□□□□ -1.57
CNOT1-223	ENST00000628857	FAM221A	A4D161	298 aa		5.22	□□□□□ -1.57
CNOT1-223	ENST00000628857	COBL	O75128	1261 aa		5.22	□□□□□ -1.57
CNOT1-223	ENST00000628857	CILP	O75339	1184 aa		5.22	□□□□□ -1.57
CNOT1-223	ENST00000628857	F13B	P05160	661 aa		5.22	□□□□□ -1.57
CNOT1-223	ENST00000628857	NEFM	P07197	916 aa		5.22	□□□□□ -1.57
CNOT1-223	ENST00000628857	RAB6A	P20340	208 aa		5.22	□□□□□ -1.57
CNOT1-223	ENST00000628857	GRIK1	P39086	918 aa		5.22	□□□□□ -1.57
CNOT1-223	ENST00000628857	INPP5A	Q14642	412 aa		5.22	□□□□□ -1.57
CNOT1-223	ENST00000628857	CYP27C1	Q4G0S4	372 aa		5.22	□□□□□ -1.57
CNOT1-223	ENST00000628857	ZMYM1	Q5SVZ6	1142 aa		5.22	□□□□□ -1.57
CNOT1-223	ENST00000628857	DUSP27	Q5VZP5	1158 aa		5.22	□□□□□ -1.57
CNOT1-223	ENST00000628857	HS2ST1	Q7LGA3	356 aa		5.22	□□□□□ -1.57
CNOT1-223	ENST00000628857	TMEM87A	Q8NBN3	555 aa		5.22	□□□□□ -1.57
CNOT1-223	ENST00000628857	SHKBP1	Q8TBC3	707 aa		5.22	□□□□□ -1.57
CNOT1-223	ENST00000628857	ISL2	Q96A47	359 aa		5.22	□□□□□ -1.57
CNOT1-223	ENST00000628857	ELMO3	Q96BJ8	720 aa		5.22	□□□□□ -1.57
CNOT1-223	ENST00000628857	TBC1D32	Q96NH3	1257 aa		5.22	□□□□□ -1.57
CNOT1-223	ENST00000628857	PCDHB5	Q9Y5E4	795 aa		5.22	□□□□□ -1.57
CNOT1-223	ENST00000628857	PRR36	Q9H6K5	1346 aa		5.22	□□□□□ -1.57
CNOT1-223	ENST00000628857	DCDC2C	A8MYV0	355 aa		5.21	□□□□□ -1.58
CNOT1-223	ENST00000628857	HCLS1	P14317	486 aa	Predicted RBP	5.21	□□□□□ -1.58
CNOT1-223	ENST00000628857	GBP2	P32456	591 aa	Predicted RBP	5.21	□□□□□ -1.58
CNOT1-223	ENST00000628857	PDE4B	Q07343	736 aa		5.21	□□□□□ -1.58
CNOT1-223	ENST00000628857	LRP8	Q14114	963 aa		5.21	□□□□□ -1.58
CNOT1-223	ENST00000628857	LRFN4	Q6PJG9	635 aa		5.21	□□□□□ -1.58
CNOT1-223	ENST00000628857	CDC37L1	Q7L3B6	337 aa		5.21	□□□□□ -1.58
CNOT1-223	ENST00000628857	C12orf40	Q86WS4	652 aa		5.21	□□□□□ -1.58
CNOT1-223	ENST00000628857	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	5.21	□□□□□ -1.58
CNOT1-223	ENST00000628857	PLPPR2	Q96GM1	343 aa		5.21	□□□□□ -1.58
CNOT1-223	ENST00000628857	MFSD14A	Q96MC6	490 aa		5.21	□□□□□ -1.58
CNOT1-223	ENST00000628857	MKNK2	Q9HBH9	465 aa		5.21	□□□□□ -1.58
CNOT1-223	ENST00000628857	PIM2	Q9P1W9	311 aa		5.21	□□□□□ -1.58
CNOT1-223	ENST00000628857	ADAM30	Q9UKF2	790 aa		5.21	□□□□□ -1.58
CNOT1-223	ENST00000628857	DAGLA	Q9Y4D2	1042 aa		5.21	□□□□□ -1.58
CNOT1-223	ENST00000628857	KIAA1324L	A8MWY0	1029 aa	Predicted RBP	5.2	□□□□□ -1.58
CNOT1-223	ENST00000628857	WDR64	B1ANS9	1081 aa		5.2	□□□□□ -1.58
CNOT1-223	ENST00000628857	SCAMP3	O14828	347 aa	Known RBP	5.2	□□□□□ -1.58
CNOT1-223	ENST00000628857	GREM1	O60565	184 aa		5.2	□□□□□ -1.58
CNOT1-223	ENST00000628857	RNGTT	O60942	597 aa	Known RBP	5.2	□□□□□ -1.58
CNOT1-223	ENST00000628857	LRIG2	O94898	1065 aa		5.2	□□□□□ -1.58

Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms