RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 GOLGA6L4A6NEF3 574 aa25.76■■□□□ 1.71
PNKP-220ENST00000627232 GOLGA8AA7E2F4 631 aa25.76■■□□□ 1.71
PNKP-220ENST00000627232 FGRP09769 529 aa25.76■■□□□ 1.71
PNKP-220ENST00000627232 FOSBP53539 338 aa25.76■■□□□ 1.71
PNKP-220ENST00000627232 GPSM2P81274 684 aa25.76■■□□□ 1.71
PNKP-220ENST00000627232 ESR2Q92731 530 aa25.76■■□□□ 1.71
PNKP-220ENST00000627232 TOMM22Q9NS69 142 aa25.76■■□□□ 1.71
PNKP-220ENST00000627232 ATP8A2Q9NTI2 1148 aa25.76■■□□□ 1.71
PNKP-220ENST00000627232 PODXL2Q9NZ53 605 aa25.76■■□□□ 1.71
PNKP-220ENST00000627232 DLEC1Q9Y238 1755 aa25.76■■□□□ 1.71
PNKP-220ENST00000627232 MINDY4BA8MYZ0 360 aa25.75■■□□□ 1.71
PNKP-220ENST00000627232 WTAPQ15007 396 aa25.75■■□□□ 1.71
PNKP-220ENST00000627232 RRP12Q5JTH9 1297 aaKnown RBP25.75■■□□□ 1.71
PNKP-220ENST00000627232 RAB11FIP4Q86YS3 637 aa25.75■■□□□ 1.71
PNKP-220ENST00000627232 AKT1S1Q96B36 256 aa25.75■■□□□ 1.71
PNKP-220ENST00000627232 RCOR1Q9UKL0 485 aa25.75■■□□□ 1.71
PNKP-220ENST00000627232 STK36Q9NRP7 1315 aa25.74■■□□□ 1.71
PNKP-220ENST00000627232 CCDC173Q0VFZ6 552 aa25.74■■□□□ 1.71
PNKP-220ENST00000627232 DZIP1Q86YF9 867 aaKnown RBP25.74■■□□□ 1.71
PNKP-220ENST00000627232 NLGN1Q8N2Q7 840 aa25.74■■□□□ 1.71
PNKP-220ENST00000627232 FLAD1Q8NFF5 587 aa25.74■■□□□ 1.71
PNKP-220ENST00000627232 GGA1Q9UJY5 639 aa25.74■■□□□ 1.71
PNKP-220ENST00000627232 RGPD3A6NKT7 1758 aaPredicted RBP25.74■■□□□ 1.71
PNKP-220ENST00000627232 RGPD4Q7Z3J3 1758 aa25.74■■□□□ 1.71
PNKP-220ENST00000627232 LTBP1Q14766 1721 aa25.74■■□□□ 1.71
PNKP-220ENST00000627232 CDC27P30260 824 aa25.73■■□□□ 1.71
PNKP-220ENST00000627232 GSTO1P78417 241 aa25.73■■□□□ 1.71
PNKP-220ENST00000627232 NTRK3Q16288 839 aa25.73■■□□□ 1.71
PNKP-220ENST00000627232 CTR9Q6PD62 1173 aa25.73■■□□□ 1.71
PNKP-220ENST00000627232 MICU3Q86XE3 530 aa25.73■■□□□ 1.71
PNKP-220ENST00000627232 MYH2Q9UKX2 1941 aa25.73■■□□□ 1.71
PNKP-220ENST00000627232 LDHBP07195 334 aaKnown RBP25.73■■□□□ 1.71
PNKP-220ENST00000627232 GUCY1B3Q02153 619 aa25.73■■□□□ 1.71
PNKP-220ENST00000627232 ZNF827Q17R98 1081 aa25.73■■□□□ 1.71
PNKP-220ENST00000627232 SBK1Q52WX2 424 aa25.73■■□□□ 1.71
PNKP-220ENST00000627232 BRAPQ7Z569 592 aa25.73■■□□□ 1.71
PNKP-220ENST00000627232 PPP1R9BQ96SB3 815 aa25.73■■□□□ 1.71
PNKP-220ENST00000627232 FAM217BQ9NTX9 383 aaPredicted RBP25.73■■□□□ 1.71
PNKP-220ENST00000627232 AATFQ9NY61 560 aaKnown RBP eCLIP25.73■■□□□ 1.71
PNKP-220ENST00000627232 PPFIA3O75145 1194 aa25.72■■□□□ 1.71
PNKP-220ENST00000627232 UFL1O94874 794 aa25.72■■□□□ 1.71
PNKP-220ENST00000627232 ILDR1Q86SU0 546 aaPredicted RBP25.72■■□□□ 1.71
PNKP-220ENST00000627232 UBAC1Q9BSL1 405 aa25.72■■□□□ 1.71
PNKP-220ENST00000627232 DCP1AQ9NPI6 582 aaPredicted RBP25.72■■□□□ 1.71
PNKP-220ENST00000627232 APBA3O96018 575 aa25.71■■□□□ 1.71
PNKP-220ENST00000627232 IL1R1P14778 569 aa25.71■■□□□ 1.71
PNKP-220ENST00000627232 IARSP41252 1262 aaKnown RBP25.71■■□□□ 1.71
PNKP-220ENST00000627232 PGBD1Q96JS3 809 aa25.71■■□□□ 1.71
PNKP-220ENST00000627232 DDX19AQ9NUU7 478 aaKnown RBP25.71■■□□□ 1.71
PNKP-220ENST00000627232 ARPP21Q9UBL0 812 aaPredicted RBP25.71■■□□□ 1.71
PNKP-220ENST00000627232 LDHCP07864 332 aa25.7■■□□□ 1.7
PNKP-220ENST00000627232 PPP2R5BQ15173 497 aa25.7■■□□□ 1.7
PNKP-220ENST00000627232 SEC23AQ15436 765 aa25.7■■□□□ 1.7
PNKP-220ENST00000627232 ALG1Q9BT22 464 aa25.7■■□□□ 1.7
PNKP-220ENST00000627232 CD209Q9NNX6 404 aa25.7■■□□□ 1.7
PNKP-220ENST00000627232 TNS1Q9HBL0 1735 aaKnown RBP25.69■■□□□ 1.7
PNKP-220ENST00000627232 CCDC196A0A1B0GTZ2 297 aa25.69■■□□□ 1.7
PNKP-220ENST00000627232 USP17L12C9JPN9 530 aa25.69■■□□□ 1.7
PNKP-220ENST00000627232 USP17L21D6R901 530 aa25.69■■□□□ 1.7
PNKP-220ENST00000627232 ORC4O43929 436 aa25.69■■□□□ 1.7
PNKP-220ENST00000627232 SLC3A2P08195 630 aaKnown RBP25.69■■□□□ 1.7
PNKP-220ENST00000627232 IFNAR1P17181 557 aa25.69■■□□□ 1.7
PNKP-220ENST00000627232 LIG1P18858 919 aa25.69■■□□□ 1.7
PNKP-220ENST00000627232 RXRAP19793 462 aa25.69■■□□□ 1.7
PNKP-220ENST00000627232 NT5C2P49902 561 aa25.69■■□□□ 1.7
PNKP-220ENST00000627232 TPRNQ4KMQ1 711 aa25.69■■□□□ 1.7
PNKP-220ENST00000627232 COL23A1Q86Y22 540 aaPredicted RBP25.69■■□□□ 1.7
PNKP-220ENST00000627232 SP8Q8IXZ3 490 aa25.69■■□□□ 1.7
PNKP-220ENST00000627232 USP28Q96RU2 1077 aa25.69■■□□□ 1.7
PNKP-220ENST00000627232 DDX52Q9Y2R4 599 aaKnown RBP eCLIP25.69■■□□□ 1.7
PNKP-220ENST00000627232 FMNL1O95466 1100 aaPredicted RBP25.68■■□□□ 1.7
PNKP-220ENST00000627232 SSRP1Q08945 709 aaKnown RBP25.68■■□□□ 1.7
PNKP-220ENST00000627232 RTN1Q16799 776 aa25.68■■□□□ 1.7
PNKP-220ENST00000627232 SLC51AQ86UW1 340 aa25.68■■□□□ 1.7
PNKP-220ENST00000627232 CERS3Q8IU89 383 aa25.68■■□□□ 1.7
PNKP-220ENST00000627232 WASF1Q92558 559 aa25.68■■□□□ 1.7
PNKP-220ENST00000627232 ZKSCAN3Q9BRR0 538 aa25.68■■□□□ 1.7
PNKP-220ENST00000627232 RTEL1Q9NZ71 1219 aa25.68■■□□□ 1.7
PNKP-220ENST00000627232 PPP4CP60510 307 aa25.68■■□□□ 1.7
PNKP-220ENST00000627232 OTUD7BQ6GQQ9 843 aa25.68■■□□□ 1.7
PNKP-220ENST00000627232 ZNF654Q8IZM8 581 aa25.68■■□□□ 1.7
PNKP-220ENST00000627232 FUCA2Q9BTY2 467 aa25.68■■□□□ 1.7
PNKP-220ENST00000627232 MYL10Q9BUA6 226 aa25.68■■□□□ 1.7
PNKP-220ENST00000627232 NUP62CLQ9H1M0 184 aa25.68■■□□□ 1.7
PNKP-220ENST00000627232 CYP2D7A0A087X1C5 515 aa25.67■■□□□ 1.7
PNKP-220ENST00000627232 RANBP6O60518 1105 aaKnown RBP25.67■■□□□ 1.7
PNKP-220ENST00000627232 KIF23Q02241 960 aaPredicted RBP25.67■■□□□ 1.7
PNKP-220ENST00000627232 UVSSAQ2YD98 709 aa25.67■■□□□ 1.7
PNKP-220ENST00000627232 CCDC144CPQ8IYA2 1237 aa25.67■■□□□ 1.7
PNKP-220ENST00000627232 STK11IPQ8N1F8 1099 aa25.67■■□□□ 1.7
PNKP-220ENST00000627232 TBC1D16Q8TBP0 767 aa25.67■■□□□ 1.7
PNKP-220ENST00000627232 BICD2Q8TD16 824 aa25.67■■□□□ 1.7
PNKP-220ENST00000627232 ZSCAN10Q96SZ4 725 aaPredicted RBP25.67■■□□□ 1.7
PNKP-220ENST00000627232 JAG2Q9Y219 1238 aa25.67■■□□□ 1.7
PNKP-220ENST00000627232 TNKSO95271 1327 aa25.66■■□□□ 1.7
PNKP-220ENST00000627232 PPEF1O14829 653 aaPredicted RBP25.66■■□□□ 1.7
PNKP-220ENST00000627232 BAG3O95817 575 aa25.66■■□□□ 1.7
PNKP-220ENST00000627232 RXRBP28702 533 aa25.66■■□□□ 1.7
PNKP-220ENST00000627232 IQCA1Q86XH1 822 aa25.66■■□□□ 1.7
PNKP-220ENST00000627232 NOL10Q9BSC4 688 aaKnown RBP25.66■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms