RNA–Protein interactions for RNA: ENST00000622668.4

HDAC9-229, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 4,279 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-229ENST00000622668 HMGN5P82970 282 aaKnown RBP10.5□□□□□ -0.73
HDAC9-229ENST00000622668 CHMP5Q9NZZ3 219 aa10.5□□□□□ -0.73
HDAC9-229ENST00000622668 OSBPP22059 807 aa10.49□□□□□ -0.73
HDAC9-229ENST00000622668 RASGRF1Q13972 1273 aa10.49□□□□□ -0.73
HDAC9-229ENST00000622668 C6orf50Q9HD87 102 aa10.49□□□□□ -0.73
HDAC9-229ENST00000622668 ZHX2Q9Y6X8 837 aa10.49□□□□□ -0.73
HDAC9-229ENST00000622668 KCTD2Q14681 263 aa10.49□□□□□ -0.73
HDAC9-229ENST00000622668 PLEKHM2Q8IWE5 1019 aa10.49□□□□□ -0.73
HDAC9-229ENST00000622668 PDCL3Q9H2J4 239 aa10.49□□□□□ -0.73
HDAC9-229ENST00000622668 LIMCH1Q9UPQ0 1083 aa10.49□□□□□ -0.73
HDAC9-229ENST00000622668 MAP1SQ66K74 1059 aaPredicted RBP10.49□□□□□ -0.73
HDAC9-229ENST00000622668 PI4KBQ9UBF8 816 aa10.49□□□□□ -0.73
HDAC9-229ENST00000622668 SASS6Q6UVJ0 657 aa10.48□□□□□ -0.73
HDAC9-229ENST00000622668 Q6ZUG5 572 aa10.48□□□□□ -0.73
HDAC9-229ENST00000622668 CEP131Q9UPN4 1083 aa10.48□□□□□ -0.73
HDAC9-229ENST00000622668 UBR1Q8IWV7 1749 aa10.48□□□□□ -0.73
HDAC9-229ENST00000622668 FAM196BA6NMK8 535 aa10.48□□□□□ -0.73
HDAC9-229ENST00000622668 PSMD14O00487 310 aa10.48□□□□□ -0.73
HDAC9-229ENST00000622668 NTSR2O95665 410 aa10.48□□□□□ -0.73
HDAC9-229ENST00000622668 KRT85P78386 507 aa10.48□□□□□ -0.73
HDAC9-229ENST00000622668 IBTKQ9P2D0 1353 aaPredicted RBP10.48□□□□□ -0.73
HDAC9-229ENST00000622668 IDEP14735 1019 aa10.48□□□□□ -0.73
HDAC9-229ENST00000622668 SF3B3Q15393 1217 aaKnown RBP10.48□□□□□ -0.73
HDAC9-229ENST00000622668 CDC37L1Q7L3B6 337 aa10.48□□□□□ -0.73
HDAC9-229ENST00000622668 DHX37Q8IY37 1157 aaKnown RBP10.48□□□□□ -0.73
HDAC9-229ENST00000622668 NECAB1Q8N987 351 aa10.48□□□□□ -0.73
HDAC9-229ENST00000622668 TCP11L1Q9NUJ3 509 aa10.48□□□□□ -0.73
HDAC9-229ENST00000622668 TLR7Q9NYK1 1049 aaKnown RBP10.48□□□□□ -0.73
HDAC9-229ENST00000622668 CDHR2Q9BYE9 1310 aa10.48□□□□□ -0.73
HDAC9-229ENST00000622668 SRGNP10124 158 aa10.47□□□□□ -0.73
HDAC9-229ENST00000622668 CALML3P27482 149 aa10.47□□□□□ -0.73
HDAC9-229ENST00000622668 CT47A1Q5JQC4 288 aaPredicted RBP10.47□□□□□ -0.73
HDAC9-229ENST00000622668 SMC5Q8IY18 1101 aa10.47□□□□□ -0.73
HDAC9-229ENST00000622668 SEC62Q99442 399 aaKnown RBP10.47□□□□□ -0.73
HDAC9-229ENST00000622668 DHX36Q9H2U1 1008 aaKnown RBP10.47□□□□□ -0.73
HDAC9-229ENST00000622668 SH2B1Q9NRF2 756 aaPredicted RBP10.47□□□□□ -0.73
HDAC9-229ENST00000622668 K7ELQ4 463 aaPredicted RBP10.47□□□□□ -0.73
HDAC9-229ENST00000622668 EPHX2P34913 555 aa10.47□□□□□ -0.73
HDAC9-229ENST00000622668 UBA7P41226 1012 aa10.47□□□□□ -0.73
HDAC9-229ENST00000622668 MECOMQ03112 1051 aa10.47□□□□□ -0.73
HDAC9-229ENST00000622668 RASA3Q14644 834 aa10.47□□□□□ -0.73
HDAC9-229ENST00000622668 ZFYVE27Q5T4F4 411 aa10.47□□□□□ -0.73
HDAC9-229ENST00000622668 ANTXR1Q9H6X2 564 aa10.47□□□□□ -0.73
HDAC9-229ENST00000622668 RTL9Q8NET4 1388 aa10.47□□□□□ -0.73
HDAC9-229ENST00000622668 DEPDC5O75140 1603 aa10.47□□□□□ -0.73
HDAC9-229ENST00000622668 PATL2C9JE40 543 aaKnown RBP10.47□□□□□ -0.73
HDAC9-229ENST00000622668 PPARAQ07869 468 aa10.47□□□□□ -0.73
HDAC9-229ENST00000622668 DISP2A7MBM2 1401 aa10.47□□□□□ -0.73
HDAC9-229ENST00000622668 CCDC17Q96LX7 622 aa10.47□□□□□ -0.73
HDAC9-229ENST00000622668 ALG1Q9BT22 464 aa10.47□□□□□ -0.73
HDAC9-229ENST00000622668 TCHPQ9BT92 498 aa10.47□□□□□ -0.73
HDAC9-229ENST00000622668 TMEM232C9JQI7 657 aa10.46□□□□□ -0.73
HDAC9-229ENST00000622668 ASNSP08243 561 aa10.46□□□□□ -0.73
HDAC9-229ENST00000622668 CREB3L3Q68CJ9 461 aa10.46□□□□□ -0.73
HDAC9-229ENST00000622668 SLFN13Q68D06 897 aa10.46□□□□□ -0.73
HDAC9-229ENST00000622668 IFNL3Q8IZI9 196 aa10.46□□□□□ -0.73
HDAC9-229ENST00000622668 MXD3Q9BW11 206 aa10.46□□□□□ -0.73
HDAC9-229ENST00000622668 PRKAG2Q9UGJ0 569 aa10.46□□□□□ -0.73
HDAC9-229ENST00000622668 PNMA3Q9UL41 463 aa10.46□□□□□ -0.73
HDAC9-229ENST00000622668 ADAMTSL3P82987 1691 aa10.46□□□□□ -0.73
HDAC9-229ENST00000622668 WDR33Q9C0J8 1336 aaKnown RBP10.46□□□□□ -0.73
HDAC9-229ENST00000622668 CHMLP26374 656 aa10.46□□□□□ -0.74
HDAC9-229ENST00000622668 GNA11P29992 359 aa10.46□□□□□ -0.74
HDAC9-229ENST00000622668 APOBRQ0VD83 1088 aa10.46□□□□□ -0.74
HDAC9-229ENST00000622668 SPP2Q13103 211 aa10.46□□□□□ -0.74
HDAC9-229ENST00000622668 ZNF341Q9BYN7 854 aa10.46□□□□□ -0.74
HDAC9-229ENST00000622668 ATP8A2Q9NTI2 1148 aa10.46□□□□□ -0.74
HDAC9-229ENST00000622668 IPO7O95373 1038 aaKnown RBP10.46□□□□□ -0.74
HDAC9-229ENST00000622668 MAP3K9P80192 1104 aa10.46□□□□□ -0.74
HDAC9-229ENST00000622668 DDR1Q08345 913 aa10.46□□□□□ -0.74
HDAC9-229ENST00000622668 STIM1Q13586 685 aa10.46□□□□□ -0.74
HDAC9-229ENST00000622668 RBM27Q9P2N5 1060 aaKnown RBP10.46□□□□□ -0.74
HDAC9-229ENST00000622668 PLEKHG2Q9H7P9 1386 aa10.45□□□□□ -0.74
HDAC9-229ENST00000622668 SOCS7O14512 581 aa10.45□□□□□ -0.74
HDAC9-229ENST00000622668 ECE1P42892 770 aa10.45□□□□□ -0.74
HDAC9-229ENST00000622668 STRIP1Q5VSL9 837 aa10.45□□□□□ -0.74
HDAC9-229ENST00000622668 DHX32Q7L7V1 743 aaKnown RBP10.45□□□□□ -0.74
HDAC9-229ENST00000622668 CEP57L1Q8IYX8 460 aa10.45□□□□□ -0.74
HDAC9-229ENST00000622668 MYL10Q9BUA6 226 aa10.45□□□□□ -0.74
HDAC9-229ENST00000622668 PANK2Q9BZ23 570 aa10.45□□□□□ -0.74
HDAC9-229ENST00000622668 ELP3Q9H9T3 547 aa10.45□□□□□ -0.74
HDAC9-229ENST00000622668 CFAP45Q9UL16 551 aa10.45□□□□□ -0.74
HDAC9-229ENST00000622668 ATP10DQ9P241 1426 aa10.45□□□□□ -0.74
HDAC9-229ENST00000622668 MROH2AA6NES4 1674 aa10.45□□□□□ -0.74
HDAC9-229ENST00000622668 DDX11L8A8MPP1 907 aa10.45□□□□□ -0.74
HDAC9-229ENST00000622668 POLRMTO00411 1230 aaKnown RBP10.45□□□□□ -0.74
HDAC9-229ENST00000622668 TPM3P06753 285 aa10.45□□□□□ -0.74
HDAC9-229ENST00000622668 USP14P54578 494 aa10.45□□□□□ -0.74
HDAC9-229ENST00000622668 BRPF1P55201 1214 aaPredicted RBP10.45□□□□□ -0.74
HDAC9-229ENST00000622668 TAF1CQ15572 869 aaPredicted RBP10.45□□□□□ -0.74
HDAC9-229ENST00000622668 AKNAD1Q5T1N1 836 aa10.45□□□□□ -0.74
HDAC9-229ENST00000622668 EP400NLQ6ZTU2 488 aa10.45□□□□□ -0.74
HDAC9-229ENST00000622668 SCARF1Q14162 830 aa10.45□□□□□ -0.74
HDAC9-229ENST00000622668 RSBN1LQ6PCB5 846 aaPredicted RBP10.45□□□□□ -0.74
HDAC9-229ENST00000622668 SPATA32Q96LK8 384 aa10.45□□□□□ -0.74
HDAC9-229ENST00000622668 CCDC39Q9UFE4 941 aa10.45□□□□□ -0.74
HDAC9-229ENST00000622668 BCL9O00512 1426 aa10.45□□□□□ -0.74
HDAC9-229ENST00000622668 GH2P01242 217 aa10.44□□□□□ -0.74
HDAC9-229ENST00000622668 MKRN1Q9UHC7 482 aaKnown RBP10.44□□□□□ -0.74
HDAC9-229ENST00000622668 CNPY2Q9Y2B0 182 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms