RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 GPAA1O43292 621 aa23.7■■□□□ 1.38
UPF3A-211ENST00000618700 TNFAIP1Q13829 316 aa23.7■■□□□ 1.38
UPF3A-211ENST00000618700 KRT26Q7Z3Y9 468 aa23.7■■□□□ 1.38
UPF3A-211ENST00000618700 FAM83AQ86UY5 434 aa23.7■■□□□ 1.38
UPF3A-211ENST00000618700 SCAF8Q9UPN6 1271 aaKnown RBP23.7■■□□□ 1.38
UPF3A-211ENST00000618700 COL2A1P02458 1487 aaPredicted RBP23.69■■□□□ 1.38
UPF3A-211ENST00000618700 RPAP1Q9BWH6 1393 aaPredicted RBP23.69■■□□□ 1.38
UPF3A-211ENST00000618700 FSTL1Q12841 308 aa23.69■■□□□ 1.38
UPF3A-211ENST00000618700 MCMDC2Q4G0Z9 681 aa23.69■■□□□ 1.38
UPF3A-211ENST00000618700 SULF1Q8IWU6 871 aa23.69■■□□□ 1.38
UPF3A-211ENST00000618700 CRNKL1Q9BZJ0 848 aaKnown RBP23.69■■□□□ 1.38
UPF3A-211ENST00000618700 PPP2R3BQ9Y5P8 575 aa23.69■■□□□ 1.38
UPF3A-211ENST00000618700 FLT1P17948 1338 aa23.68■■□□□ 1.38
UPF3A-211ENST00000618700 ADM5C9JUS6 153 aa23.68■■□□□ 1.38
UPF3A-211ENST00000618700 ENTPD3O75355 529 aa23.68■■□□□ 1.38
UPF3A-211ENST00000618700 TNNI2P48788 182 aa23.68■■□□□ 1.38
UPF3A-211ENST00000618700 CWC27Q6UX04 472 aaKnown RBP23.68■■□□□ 1.38
UPF3A-211ENST00000618700 CCDC129Q6ZRS4 1044 aa23.68■■□□□ 1.38
UPF3A-211ENST00000618700 CDC37L1Q7L3B6 337 aa23.68■■□□□ 1.38
UPF3A-211ENST00000618700 ZNF589Q86UQ0 364 aaPredicted RBP23.68■■□□□ 1.38
UPF3A-211ENST00000618700 SMC1BQ8NDV3 1235 aa23.68■■□□□ 1.38
UPF3A-211ENST00000618700 GLIS2Q9BZE0 524 aaPredicted RBP23.68■■□□□ 1.38
UPF3A-211ENST00000618700 DEFB129Q9H1M3 183 aa23.68■■□□□ 1.38
UPF3A-211ENST00000618700 RAD50Q92878 1312 aa23.67■■□□□ 1.38
UPF3A-211ENST00000618700 CDC45O75419 566 aa23.67■■□□□ 1.38
UPF3A-211ENST00000618700 PICALMQ13492 652 aa23.67■■□□□ 1.38
UPF3A-211ENST00000618700 RASA3Q14644 834 aa23.67■■□□□ 1.38
UPF3A-211ENST00000618700 TGFBRAP1Q8WUH2 860 aa23.67■■□□□ 1.38
UPF3A-211ENST00000618700 FAM151AQ8WW52 585 aa23.67■■□□□ 1.38
UPF3A-211ENST00000618700 OSBPL5Q9H0X9 879 aaPredicted RBP23.67■■□□□ 1.38
UPF3A-211ENST00000618700 IL25Q9H293 177 aa23.67■■□□□ 1.38
UPF3A-211ENST00000618700 MKRN1Q9UHC7 482 aaKnown RBP23.67■■□□□ 1.38
UPF3A-211ENST00000618700 NAV1Q8NEY1 1877 aa23.66■■□□□ 1.38
UPF3A-211ENST00000618700 CCDC171Q6TFL3 1326 aa23.66■■□□□ 1.38
UPF3A-211ENST00000618700 PRKAB2O43741 272 aa23.66■■□□□ 1.38
UPF3A-211ENST00000618700 HSPA6P17066 643 aa23.66■■□□□ 1.38
UPF3A-211ENST00000618700 GNAT2P19087 354 aa23.66■■□□□ 1.38
UPF3A-211ENST00000618700 USP48Q86UV5 1035 aa23.66■■□□□ 1.38
UPF3A-211ENST00000618700 MAPKAPK5Q8IW41 473 aa23.66■■□□□ 1.38
UPF3A-211ENST00000618700 ZFPM1Q8IX07 1006 aa23.66■■□□□ 1.38
UPF3A-211ENST00000618700 SDR42E1Q8WUS8 393 aa23.66■■□□□ 1.38
UPF3A-211ENST00000618700 TEPSINQ96N21 525 aa23.66■■□□□ 1.38
UPF3A-211ENST00000618700 TMEM39BQ9GZU3 492 aa23.66■■□□□ 1.38
UPF3A-211ENST00000618700 ATRNL1Q5VV63 1379 aa23.65■■□□□ 1.38
UPF3A-211ENST00000618700 FOXP2O15409 715 aa23.65■■□□□ 1.38
UPF3A-211ENST00000618700 ITGBL1O95965 494 aaPredicted RBP23.65■■□□□ 1.38
UPF3A-211ENST00000618700 TCP10Q12799 353 aa23.65■■□□□ 1.38
UPF3A-211ENST00000618700 SLC4A4Q9Y6R1 1079 aa23.65■■□□□ 1.38
UPF3A-211ENST00000618700 USP5P45974 858 aa23.64■■□□□ 1.37
UPF3A-211ENST00000618700 SH3BP5LQ7L8J4 393 aa23.64■■□□□ 1.37
UPF3A-211ENST00000618700 CDAN1Q8IWY9 1227 aa23.64■■□□□ 1.37
UPF3A-211ENST00000618700 RUFY2Q8WXA3 655 aa23.64■■□□□ 1.37
UPF3A-211ENST00000618700 EPB41L4AQ9HCS5 686 aaPredicted RBP23.64■■□□□ 1.37
UPF3A-211ENST00000618700 DCP1AQ9NPI6 582 aaPredicted RBP23.64■■□□□ 1.37
UPF3A-211ENST00000618700 SSC5DA1L4H1 1573 aa23.64■■□□□ 1.37
UPF3A-211ENST00000618700 GSG1L2A8MUP6 293 aa23.63■■□□□ 1.37
UPF3A-211ENST00000618700 TRAF5O00463 557 aa23.63■■□□□ 1.37
UPF3A-211ENST00000618700 SGSM2O43147 1006 aa23.63■■□□□ 1.37
UPF3A-211ENST00000618700 MFAP1P55081 439 aaKnown RBP23.63■■□□□ 1.37
UPF3A-211ENST00000618700 DLK2Q6UY11 383 aa23.63■■□□□ 1.37
UPF3A-211ENST00000618700 CDCA5Q96FF9 252 aa23.63■■□□□ 1.37
UPF3A-211ENST00000618700 ATP8A2Q9NTI2 1148 aa23.63■■□□□ 1.37
UPF3A-211ENST00000618700 VPS53Q5VIR6 699 aa23.62■■□□□ 1.37
UPF3A-211ENST00000618700 GIMAP6Q6P9H5 292 aa23.62■■□□□ 1.37
UPF3A-211ENST00000618700 ESYT1Q9BSJ8 1104 aa23.62■■□□□ 1.37
UPF3A-211ENST00000618700 PASKQ96RG2 1323 aa23.61■■□□□ 1.37
UPF3A-211ENST00000618700 MYH1P12882 1939 aa23.61■■□□□ 1.37
UPF3A-211ENST00000618700 PATL2C9JE40 543 aaKnown RBP23.61■■□□□ 1.37
UPF3A-211ENST00000618700 PRAMEF18Q5VWM3 479 aa23.61■■□□□ 1.37
UPF3A-211ENST00000618700 SIPA1L1O43166 1804 aa23.61■■□□□ 1.37
UPF3A-211ENST00000618700 DDTLA6NHG4 134 aaPredicted RBP23.6■■□□□ 1.37
UPF3A-211ENST00000618700 HSPD1P10809 573 aaKnown RBP23.6■■□□□ 1.37
UPF3A-211ENST00000618700 FMR1Q06787 632 aaKnown RBP eCLIP23.6■■□□□ 1.37
UPF3A-211ENST00000618700 CASC1Q6TDU7 716 aa23.6■■□□□ 1.37
UPF3A-211ENST00000618700 BAZ2AQ9UIF9 1905 aaKnown RBP23.6■■□□□ 1.37
UPF3A-211ENST00000618700 PRR29P0C7W0 189 aa23.59■■□□□ 1.37
UPF3A-211ENST00000618700 NBPF12Q5TAG4 269 aaPredicted RBP23.59■■□□□ 1.37
UPF3A-211ENST00000618700 DHX36Q9H2U1 1008 aaKnown RBP23.59■■□□□ 1.37
UPF3A-211ENST00000618700 SAP30BPQ9UHR5 308 aaKnown RBP23.59■■□□□ 1.37
UPF3A-211ENST00000618700 ZMYM6O95789 1325 aa23.59■■□□□ 1.37
UPF3A-211ENST00000618700 IFNL3Q8IZI9 196 aa23.58■■□□□ 1.37
UPF3A-211ENST00000618700 DDRGK1Q96HY6 314 aa23.58■■□□□ 1.37
UPF3A-211ENST00000618700 CSRNP1Q96S65 589 aa23.58■■□□□ 1.37
UPF3A-211ENST00000618700 MCM9Q9NXL9 1143 aa23.58■■□□□ 1.37
UPF3A-211ENST00000618700 PALD1Q9ULE6 856 aa23.58■■□□□ 1.37
UPF3A-211ENST00000618700 TRPM7Q96QT4 1865 aa23.58■■□□□ 1.36
UPF3A-211ENST00000618700 LAMB1P07942 1786 aa23.57■■□□□ 1.36
UPF3A-211ENST00000618700 ALX1Q15699 326 aa23.57■■□□□ 1.36
UPF3A-211ENST00000618700 ZSCAN29Q8IWY8 852 aaPredicted RBP23.57■■□□□ 1.36
UPF3A-211ENST00000618700 PIP4P2Q8N4L2 257 aa23.57■■□□□ 1.36
UPF3A-211ENST00000618700 DSCC1Q9BVC3 393 aa23.57■■□□□ 1.36
UPF3A-211ENST00000618700 NACAP1Q9BZK3 213 aa23.57■■□□□ 1.36
UPF3A-211ENST00000618700 APPP05067 770 aa23.56■■□□□ 1.36
UPF3A-211ENST00000618700 FXR2P51116 673 aaKnown RBP eCLIP23.56■■□□□ 1.36
UPF3A-211ENST00000618700 APLP1P51693 650 aa23.56■■□□□ 1.36
UPF3A-211ENST00000618700 SUPT20HL1Q3ZLR7 823 aa23.56■■□□□ 1.36
UPF3A-211ENST00000618700 SBK1Q52WX2 424 aa23.56■■□□□ 1.36
UPF3A-211ENST00000618700 CTR9Q6PD62 1173 aa23.56■■□□□ 1.36
UPF3A-211ENST00000618700 ARPP21Q9UBL0 812 aaPredicted RBP23.56■■□□□ 1.36
UPF3A-211ENST00000618700 USP17L12C9JPN9 530 aa23.55■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms