RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 DDRGK1Q96HY6 314 aa20.49■□□□□ 0.87
NUP88-210ENST00000574867 DDX4Q9NQI0 724 aaKnown RBP20.49■□□□□ 0.87
NUP88-210ENST00000574867 ATP8A2Q9NTI2 1148 aa20.49■□□□□ 0.87
NUP88-210ENST00000574867 CCDC129Q6ZRS4 1044 aa20.48■□□□□ 0.87
NUP88-210ENST00000574867 ZNF589Q86UQ0 364 aaPredicted RBP20.48■□□□□ 0.87
NUP88-210ENST00000574867 SMC1BQ8NDV3 1235 aa20.48■□□□□ 0.87
NUP88-210ENST00000574867 OSBPL5Q9H0X9 879 aaPredicted RBP20.48■□□□□ 0.87
NUP88-210ENST00000574867 DEFB129Q9H1M3 183 aa20.48■□□□□ 0.87
NUP88-210ENST00000574867 SGSM2O43147 1006 aa20.47■□□□□ 0.87
NUP88-210ENST00000574867 RASA3Q14644 834 aa20.47■□□□□ 0.87
NUP88-210ENST00000574867 TCP10Q12799 353 aa20.47■□□□□ 0.87
NUP88-210ENST00000574867 GIMAP6Q6P9H5 292 aa20.47■□□□□ 0.87
NUP88-210ENST00000574867 MAPKAPK5Q8IW41 473 aa20.47■□□□□ 0.87
NUP88-210ENST00000574867 SDR42E1Q8WUS8 393 aa20.47■□□□□ 0.87
NUP88-210ENST00000574867 MYH1P12882 1939 aa20.47■□□□□ 0.87
NUP88-210ENST00000574867 ATRNL1Q5VV63 1379 aa20.47■□□□□ 0.87
NUP88-210ENST00000574867 ADM5C9JUS6 153 aa20.46■□□□□ 0.87
NUP88-210ENST00000574867 ESYT1Q9BSJ8 1104 aa20.46■□□□□ 0.87
NUP88-210ENST00000574867 GLIS2Q9BZE0 524 aaPredicted RBP20.46■□□□□ 0.87
NUP88-210ENST00000574867 DCP1AQ9NPI6 582 aaPredicted RBP20.46■□□□□ 0.87
NUP88-210ENST00000574867 MKRN1Q9UHC7 482 aaKnown RBP20.46■□□□□ 0.87
NUP88-210ENST00000574867 PRKAB2O43741 272 aa20.46■□□□□ 0.87
NUP88-210ENST00000574867 NACAP1Q9BZK3 213 aa20.46■□□□□ 0.87
NUP88-210ENST00000574867 DHX36Q9H2U1 1008 aaKnown RBP20.46■□□□□ 0.87
NUP88-210ENST00000574867 PATL2C9JE40 543 aaKnown RBP20.45■□□□□ 0.86
NUP88-210ENST00000574867 USP48Q86UV5 1035 aa20.45■□□□□ 0.86
NUP88-210ENST00000574867 TMEM39BQ9GZU3 492 aa20.45■□□□□ 0.86
NUP88-210ENST00000574867 SCAF8Q9UPN6 1271 aaKnown RBP20.45■□□□□ 0.86
NUP88-210ENST00000574867 GSG1L2A8MUP6 293 aa20.44■□□□□ 0.86
NUP88-210ENST00000574867 IL25Q9H293 177 aa20.44■□□□□ 0.86
NUP88-210ENST00000574867 ZMYM6O95789 1325 aa20.44■□□□□ 0.86
NUP88-210ENST00000574867 LAMB1P07942 1786 aa20.44■□□□□ 0.86
NUP88-210ENST00000574867 BAZ2AQ9UIF9 1905 aaKnown RBP20.44■□□□□ 0.86
NUP88-210ENST00000574867 APPP05067 770 aa20.44■□□□□ 0.86
NUP88-210ENST00000574867 HOOK2Q96ED9 719 aa20.44■□□□□ 0.86
NUP88-210ENST00000574867 FSTL1Q12841 308 aa20.43■□□□□ 0.86
NUP88-210ENST00000574867 ZSCAN29Q8IWY8 852 aaPredicted RBP20.43■□□□□ 0.86
NUP88-210ENST00000574867 AMOTL1Q8IY63 956 aa20.43■□□□□ 0.86
NUP88-210ENST00000574867 TEPSINQ96N21 525 aa20.43■□□□□ 0.86
NUP88-210ENST00000574867 DSCC1Q9BVC3 393 aa20.43■□□□□ 0.86
NUP88-210ENST00000574867 ARPP21Q9UBL0 812 aaPredicted RBP20.43■□□□□ 0.86
NUP88-210ENST00000574867 HSPD1P10809 573 aaKnown RBP20.42■□□□□ 0.86
NUP88-210ENST00000574867 TDO2P48775 406 aa20.42■□□□□ 0.86
NUP88-210ENST00000574867 VPS53Q5VIR6 699 aa20.42■□□□□ 0.86
NUP88-210ENST00000574867 ZFPM1Q8IX07 1006 aa20.42■□□□□ 0.86
NUP88-210ENST00000574867 CDCA5Q96FF9 252 aa20.42■□□□□ 0.86
NUP88-210ENST00000574867 EPB41L4AQ9HCS5 686 aaPredicted RBP20.42■□□□□ 0.86
NUP88-210ENST00000574867 MCM9Q9NXL9 1143 aa20.42■□□□□ 0.86
NUP88-210ENST00000574867 FOXP2O15409 715 aa20.42■□□□□ 0.86
NUP88-210ENST00000574867 ITGBL1O95965 494 aaPredicted RBP20.42■□□□□ 0.86
NUP88-210ENST00000574867 HLA-DOAP06340 250 aa20.42■□□□□ 0.86
NUP88-210ENST00000574867 SUPT20HL1Q3ZLR7 823 aa20.42■□□□□ 0.86
NUP88-210ENST00000574867 IFNL3Q8IZI9 196 aa20.42■□□□□ 0.86
NUP88-210ENST00000574867 CSRNP1Q96S65 589 aa20.42■□□□□ 0.86
NUP88-210ENST00000574867 NAPBQ9H115 298 aa20.42■□□□□ 0.86
NUP88-210ENST00000574867 ALX1Q15699 326 aa20.41■□□□□ 0.86
NUP88-210ENST00000574867 KIAA1211Q6ZU35 1233 aa20.41■□□□□ 0.86
NUP88-210ENST00000574867 TRPM7Q96QT4 1865 aa20.41■□□□□ 0.86
NUP88-210ENST00000574867 DDTLA6NHG4 134 aaPredicted RBP20.41■□□□□ 0.86
NUP88-210ENST00000574867 NF2P35240 595 aa20.41■□□□□ 0.86
NUP88-210ENST00000574867 SH3BP5LQ7L8J4 393 aa20.41■□□□□ 0.86
NUP88-210ENST00000574867 TTC6Q86TZ1 520 aa20.41■□□□□ 0.86
NUP88-210ENST00000574867 SAP30BPQ9UHR5 308 aaKnown RBP20.41■□□□□ 0.86
NUP88-210ENST00000574867 PI4KBQ9UBF8 816 aa20.4■□□□□ 0.86
NUP88-210ENST00000574867 PALD1Q9ULE6 856 aa20.4■□□□□ 0.86
NUP88-210ENST00000574867 SIPA1L1O43166 1804 aa20.4■□□□□ 0.86
NUP88-210ENST00000574867 SSC5DA1L4H1 1573 aa20.39■□□□□ 0.86
NUP88-210ENST00000574867 TRAF5O00463 557 aa20.39■□□□□ 0.86
NUP88-210ENST00000574867 EIF5BO60841 1220 aaKnown RBP20.39■□□□□ 0.86
NUP88-210ENST00000574867 POLR3DP05423 398 aaPredicted RBP20.39■□□□□ 0.86
NUP88-210ENST00000574867 SBK1Q52WX2 424 aa20.39■□□□□ 0.86
NUP88-210ENST00000574867 TAOK2Q9UL54 1235 aa20.39■□□□□ 0.86
NUP88-210ENST00000574867 LAMA4Q16363 1823 aa20.39■□□□□ 0.85
NUP88-210ENST00000574867 NBPF12Q5TAG4 269 aaPredicted RBP20.39■□□□□ 0.85
NUP88-210ENST00000574867 CTR9Q6PD62 1173 aa20.39■□□□□ 0.85
NUP88-210ENST00000574867 CDAN1Q8IWY9 1227 aa20.39■□□□□ 0.85
NUP88-210ENST00000574867 EHD4Q9H223 541 aa20.39■□□□□ 0.85
NUP88-210ENST00000574867 PASKQ96RG2 1323 aa20.39■□□□□ 0.85
NUP88-210ENST00000574867 USP17L12C9JPN9 530 aa20.38■□□□□ 0.85
NUP88-210ENST00000574867 USP17L21D6R901 530 aa20.38■□□□□ 0.85
NUP88-210ENST00000574867 PRAMEF18Q5VWM3 479 aa20.38■□□□□ 0.85
NUP88-210ENST00000574867 DCAF15Q66K64 600 aa20.38■□□□□ 0.85
NUP88-210ENST00000574867 ANO2Q9NQ90 1003 aa20.38■□□□□ 0.85
NUP88-210ENST00000574867 HERC5Q9UII4 1024 aaKnown RBP20.38■□□□□ 0.85
NUP88-210ENST00000574867 REC8O95072 547 aa20.38■□□□□ 0.85
NUP88-210ENST00000574867 C12orf60Q5U649 245 aa20.38■□□□□ 0.85
NUP88-210ENST00000574867 ROBO3Q96MS0 1386 aa20.38■□□□□ 0.85
NUP88-210ENST00000574867 PAPPA2Q9BXP8 1791 aa20.37■□□□□ 0.85
NUP88-210ENST00000574867 FGAP02671 866 aa20.37■□□□□ 0.85
NUP88-210ENST00000574867 DLK2Q6UY11 383 aa20.37■□□□□ 0.85
NUP88-210ENST00000574867 CTNNA3Q9UI47 895 aa20.37■□□□□ 0.85
NUP88-210ENST00000574867 TBC1D12O60347 775 aa20.36■□□□□ 0.85
NUP88-210ENST00000574867 FOXP4Q8IVH2 680 aaPredicted RBP20.36■□□□□ 0.85
NUP88-210ENST00000574867 LSG1Q9H089 658 aaKnown RBP20.36■□□□□ 0.85
NUP88-210ENST00000574867 SERPINB13Q9UIV8 391 aa20.36■□□□□ 0.85
NUP88-210ENST00000574867 U3KPZ7 1027 aaPredicted RBP20.36■□□□□ 0.85
NUP88-210ENST00000574867 SLC4A8Q2Y0W8 1093 aa20.36■□□□□ 0.85
NUP88-210ENST00000574867 METTL16Q86W50 562 aaKnown RBP20.36■□□□□ 0.85
NUP88-210ENST00000574867 CRACR2BQ8N4Y2 399 aaPredicted RBP20.36■□□□□ 0.85
NUP88-210ENST00000574867 TRIM34Q9BYJ4 488 aa20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 158.5 ms