RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 PPARAQ07869 468 aa7.24□□□□□ -1.25
CLN3-223ENST00000566472 GNL2Q13823 731 aaKnown RBP7.24□□□□□ -1.25
CLN3-223ENST00000566472 SAFBQ15424 915 aaKnown RBP eCLIP7.24□□□□□ -1.25
CLN3-223ENST00000566472 ZRSR1Q15695 479 aaKnown RBP7.24□□□□□ -1.25
CLN3-223ENST00000566472 RTN1Q16799 776 aa7.24□□□□□ -1.25
CLN3-223ENST00000566472 CAVIN4Q5BKX8 364 aa7.24□□□□□ -1.25
CLN3-223ENST00000566472 AXDND1Q5T1B0 1012 aaPredicted RBP7.24□□□□□ -1.25
CLN3-223ENST00000566472 C11orf57Q6ZUT1 292 aaPredicted RBP7.24□□□□□ -1.25
CLN3-223ENST00000566472 MICU3Q86XE3 530 aa7.24□□□□□ -1.25
CLN3-223ENST00000566472 LINC00116Q8NCU8 138 aa7.24□□□□□ -1.25
CLN3-223ENST00000566472 ESR2Q92731 530 aa7.24□□□□□ -1.25
CLN3-223ENST00000566472 MAP7D2Q96T17 732 aa7.24□□□□□ -1.25
CLN3-223ENST00000566472 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.24□□□□□ -1.25
CLN3-223ENST00000566472 TRIM5Q9C035 493 aa7.24□□□□□ -1.25
CLN3-223ENST00000566472 ANKRD2Q9GZV1 360 aa7.24□□□□□ -1.25
CLN3-223ENST00000566472 KCNF1Q9H3M0 494 aa7.24□□□□□ -1.25
CLN3-223ENST00000566472 TTC12Q9H892 705 aaPredicted RBP7.24□□□□□ -1.25
CLN3-223ENST00000566472 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.24□□□□□ -1.25
CLN3-223ENST00000566472 FAM217BQ9NTX9 383 aaPredicted RBP7.24□□□□□ -1.25
CLN3-223ENST00000566472 ZSWIM5Q9P217 1185 aa7.24□□□□□ -1.25
CLN3-223ENST00000566472 KIAA1468Q9P260 1216 aa7.24□□□□□ -1.25
CLN3-223ENST00000566472 NARFQ9UHQ1 456 aa7.24□□□□□ -1.25
CLN3-223ENST00000566472 HPSEQ9Y251 543 aa7.24□□□□□ -1.25
CLN3-223ENST00000566472 DUOX1Q9NRD9 1551 aa7.24□□□□□ -1.25
CLN3-223ENST00000566472 COL1A1P02452 1464 aaPredicted RBP7.24□□□□□ -1.25
CLN3-223ENST00000566472 MAST2Q6P0Q8 1798 aa7.23□□□□□ -1.25
CLN3-223ENST00000566472 NHSQ6T4R5 1651 aa7.23□□□□□ -1.25
CLN3-223ENST00000566472 THSD7AQ9UPZ6 1657 aa7.23□□□□□ -1.25
CLN3-223ENST00000566472 FAM177BA6PVY3 158 aa7.23□□□□□ -1.25
CLN3-223ENST00000566472 IKBKBO14920 756 aa7.23□□□□□ -1.25
CLN3-223ENST00000566472 RANBP6O60518 1105 aaKnown RBP7.23□□□□□ -1.25
CLN3-223ENST00000566472 MMP1P03956 469 aa7.23□□□□□ -1.25
CLN3-223ENST00000566472 POLR3DP05423 398 aaPredicted RBP7.23□□□□□ -1.25
CLN3-223ENST00000566472 SLC3A2P08195 630 aaKnown RBP7.23□□□□□ -1.25
CLN3-223ENST00000566472 FGRP09769 529 aa7.23□□□□□ -1.25
CLN3-223ENST00000566472 CALM1P0DP23 149 aa7.23□□□□□ -1.25
CLN3-223ENST00000566472 CALM2P0DP24 149 aa7.23□□□□□ -1.25
CLN3-223ENST00000566472 CALM3P0DP25 149 aa7.23□□□□□ -1.25
CLN3-223ENST00000566472 PFKFB1P16118 471 aa7.23□□□□□ -1.25
CLN3-223ENST00000566472 NDUFA8P51970 172 aa7.23□□□□□ -1.25
CLN3-223ENST00000566472 GSDMDP57764 484 aa7.23□□□□□ -1.25
CLN3-223ENST00000566472 NLRP12P59046 1061 aa7.23□□□□□ -1.25
CLN3-223ENST00000566472 CTDSPL2Q05D32 466 aa7.23□□□□□ -1.25
CLN3-223ENST00000566472 PTPAQ15257 358 aa7.23□□□□□ -1.25
CLN3-223ENST00000566472 ERFEQ4G0M1 354 aa7.23□□□□□ -1.25
CLN3-223ENST00000566472 RILPL1Q5EBL4 403 aa7.23□□□□□ -1.25
CLN3-223ENST00000566472 OTUD7BQ6GQQ9 843 aa7.23□□□□□ -1.25
CLN3-223ENST00000566472 FBXO33Q7Z6M2 555 aa7.23□□□□□ -1.25
CLN3-223ENST00000566472 MTERF4Q7Z6M4 381 aaKnown RBP7.23□□□□□ -1.25
CLN3-223ENST00000566472 SDF4Q9BRK5 362 aa7.23□□□□□ -1.25
CLN3-223ENST00000566472 RIOK1Q9BRS2 568 aaKnown RBP7.23□□□□□ -1.25
CLN3-223ENST00000566472 UBAC1Q9BSL1 405 aa7.23□□□□□ -1.25
CLN3-223ENST00000566472 SLC26A6Q9BXS9 759 aa7.23□□□□□ -1.25
CLN3-223ENST00000566472 RNF26Q9BY78 433 aaPredicted RBP7.23□□□□□ -1.25
CLN3-223ENST00000566472 BCL11BQ9C0K0 894 aaPredicted RBP7.23□□□□□ -1.25
CLN3-223ENST00000566472 FOXP1Q9H334 677 aaPredicted RBP7.23□□□□□ -1.25
CLN3-223ENST00000566472 RBM28Q9NW13 759 aaKnown RBP7.23□□□□□ -1.25
CLN3-223ENST00000566472 IMPACTQ9P2X3 320 aa7.23□□□□□ -1.25
CLN3-223ENST00000566472 TUBE1Q9UJT0 475 aa7.23□□□□□ -1.25
CLN3-223ENST00000566472 MINPP1Q9UNW1 487 aa7.23□□□□□ -1.25
CLN3-223ENST00000566472 UQCRHLA0A096LP55 91 aa7.22□□□□□ -1.25
CLN3-223ENST00000566472 A0A0G2JS52 829 aa7.22□□□□□ -1.25
CLN3-223ENST00000566472 A0A1B0GVL5 298 aa7.22□□□□□ -1.25
CLN3-223ENST00000566472 PRKAB2O43741 272 aa7.22□□□□□ -1.25
CLN3-223ENST00000566472 ORC4O43929 436 aa7.22□□□□□ -1.25
CLN3-223ENST00000566472 DDAH1O94760 285 aa7.22□□□□□ -1.25
CLN3-223ENST00000566472 ZNF202O95125 648 aa7.22□□□□□ -1.25
CLN3-223ENST00000566472 BMP15O95972 392 aa7.22□□□□□ -1.25
CLN3-223ENST00000566472 UQCRHP07919 91 aa7.22□□□□□ -1.25
CLN3-223ENST00000566472 XBP1P17861 261 aa7.22□□□□□ -1.25
CLN3-223ENST00000566472 PTGS1P23219 599 aa7.22□□□□□ -1.25
CLN3-223ENST00000566472 GTF2F1P35269 517 aaKnown RBP eCLIP7.22□□□□□ -1.25
CLN3-223ENST00000566472 SYKP43405 635 aa7.22□□□□□ -1.25
CLN3-223ENST00000566472 CHAF1AQ13111 956 aaPredicted RBP7.22□□□□□ -1.25
CLN3-223ENST00000566472 SEC23AQ15436 765 aa7.22□□□□□ -1.25
CLN3-223ENST00000566472 DNTTIP2Q5QJE6 756 aaKnown RBP7.22□□□□□ -1.25
CLN3-223ENST00000566472 RESP18Q5W5W9 173 aa7.22□□□□□ -1.25
CLN3-223ENST00000566472 NBPF11Q86T75 865 aa7.22□□□□□ -1.25
CLN3-223ENST00000566472 RAB11FIP4Q86YS3 637 aa7.22□□□□□ -1.25
CLN3-223ENST00000566472 NOSTRINQ8IVI9 506 aa7.22□□□□□ -1.25
CLN3-223ENST00000566472 DHX40Q8IX18 779 aaKnown RBP7.22□□□□□ -1.25
CLN3-223ENST00000566472 DRC7Q8IY82 874 aa7.22□□□□□ -1.25
CLN3-223ENST00000566472 ZNF654Q8IZM8 581 aa7.22□□□□□ -1.25
CLN3-223ENST00000566472 CRACR2BQ8N4Y2 399 aaPredicted RBP7.22□□□□□ -1.25
CLN3-223ENST00000566472 ZNF579Q8NAF0 562 aaKnown RBP7.22□□□□□ -1.25
CLN3-223ENST00000566472 SPC24Q8NBT2 197 aa7.22□□□□□ -1.25
CLN3-223ENST00000566472 MYRIPQ8NFW9 859 aa7.22□□□□□ -1.25
CLN3-223ENST00000566472 ZNF830Q96NB3 372 aaPredicted RBP7.22□□□□□ -1.25
CLN3-223ENST00000566472 NLRP3Q96P20 1036 aa7.22□□□□□ -1.25
CLN3-223ENST00000566472 MAP3K14Q99558 947 aa7.22□□□□□ -1.25
CLN3-223ENST00000566472 BCL2L12Q9HB09 334 aa7.22□□□□□ -1.25
CLN3-223ENST00000566472 SENP2Q9HC62 589 aa7.22□□□□□ -1.25
CLN3-223ENST00000566472 RAI14Q9P0K7 980 aa7.22□□□□□ -1.25
CLN3-223ENST00000566472 CLIP2Q9UDT6 1046 aa7.22□□□□□ -1.25
CLN3-223ENST00000566472 HOOK1Q9UJC3 728 aaKnown RBP7.22□□□□□ -1.25
CLN3-223ENST00000566472 PYCARDQ9ULZ3 195 aa7.22□□□□□ -1.25
CLN3-223ENST00000566472 CEP131Q9UPN4 1083 aa7.22□□□□□ -1.25
CLN3-223ENST00000566472 TACC3Q9Y6A5 838 aa7.22□□□□□ -1.25
CLN3-223ENST00000566472 MROH7-TTC4A0A0A0MT08 1334 aa7.22□□□□□ -1.25
CLN3-223ENST00000566472 NUTM2BA6NNL0 878 aaPredicted RBP7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms