RNA–Protein interactions for RNA: ENST00000564228.5

TCF4-222, Transcript of transcription factor 4, human

TSL 1 (best) BASIC

Gene TCF4, Length 1,915 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-222	ENST00000564228	PARP3	Q9Y6F1	533 aa		12.79	□□□□□ -0.36
TCF4-222	ENST00000564228	EFCAB8	A8MWE9	144 aa		12.78	□□□□□ -0.36
TCF4-222	ENST00000564228	NR1I2	O75469	434 aa		12.78	□□□□□ -0.36
TCF4-222	ENST00000564228	TIMM10	P62072	90 aa		12.78	□□□□□ -0.36
TCF4-222	ENST00000564228	ME3	Q16798	604 aa		12.78	□□□□□ -0.36
TCF4-222	ENST00000564228	NOM1	Q5C9Z4	860 aa	Known RBP	12.78	□□□□□ -0.36
TCF4-222	ENST00000564228	E4F1	Q66K89	784 aa	Predicted RBP	12.78	□□□□□ -0.36
TCF4-222	ENST00000564228	BICD2	Q8TD16	824 aa		12.78	□□□□□ -0.36
TCF4-222	ENST00000564228	UPF1	Q92900	1129 aa	Known RBP eCLIP	12.78	□□□□□ -0.36
TCF4-222	ENST00000564228	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	12.78	□□□□□ -0.36
TCF4-222	ENST00000564228	ZNF609	O15014	1411 aa		12.78	□□□□□ -0.36
TCF4-222	ENST00000564228	CACNA1S	Q13698	1873 aa		12.78	□□□□□ -0.36
TCF4-222	ENST00000564228	TTC41P	Q6P2S7	1318 aa		12.78	□□□□□ -0.36
TCF4-222	ENST00000564228	TADA3	O75528	432 aa		12.78	□□□□□ -0.36
TCF4-222	ENST00000564228	OAS2	P29728	719 aa	Known RBP	12.78	□□□□□ -0.36
TCF4-222	ENST00000564228	GTF2A1	P52655	376 aa	Predicted RBP	12.78	□□□□□ -0.36
TCF4-222	ENST00000564228	DDX46	Q7L014	1031 aa	Known RBP	12.78	□□□□□ -0.36
TCF4-222	ENST00000564228	HELB	Q8NG08	1087 aa	Predicted RBP	12.78	□□□□□ -0.36
TCF4-222	ENST00000564228	CELF1	Q92879	486 aa	Known RBP	12.78	□□□□□ -0.36
TCF4-222	ENST00000564228	JAKMIP1	Q96N16	626 aa	Known RBP	12.78	□□□□□ -0.36
TCF4-222	ENST00000564228	ECHDC1	Q9NTX5	307 aa		12.78	□□□□□ -0.36
TCF4-222	ENST00000564228	ANO10	Q9NW15	660 aa		12.78	□□□□□ -0.36
TCF4-222	ENST00000564228	DBNL	Q9UJU6	430 aa	Known RBP	12.78	□□□□□ -0.36
TCF4-222	ENST00000564228		A0A1B0GUL7	405 aa		12.77	□□□□□ -0.37
TCF4-222	ENST00000564228	BECN2	A8MW95	431 aa		12.77	□□□□□ -0.37
TCF4-222	ENST00000564228	POLR3G	O15318	223 aa	Predicted RBP	12.77	□□□□□ -0.37
TCF4-222	ENST00000564228	IVL	P07476	585 aa		12.77	□□□□□ -0.37
TCF4-222	ENST00000564228	ETF1	P62495	437 aa	Known RBP	12.77	□□□□□ -0.37
TCF4-222	ENST00000564228	ANKRD1	Q15327	319 aa		12.77	□□□□□ -0.37
TCF4-222	ENST00000564228	ZFP91	Q96JP5	570 aa	Predicted RBP	12.77	□□□□□ -0.37
TCF4-222	ENST00000564228	PGBD1	Q96JS3	809 aa		12.77	□□□□□ -0.37
TCF4-222	ENST00000564228	DBNDD2	Q9BQY9	259 aa		12.77	□□□□□ -0.37
TCF4-222	ENST00000564228	DNAI1	Q9UI46	699 aa		12.77	□□□□□ -0.37
TCF4-222	ENST00000564228		U3KPZ7	1027 aa	Predicted RBP	12.77	□□□□□ -0.37
TCF4-222	ENST00000564228	MAP4K4	O95819	1239 aa	Predicted RBP	12.76	□□□□□ -0.37
TCF4-222	ENST00000564228	C11orf57	Q6ZUT1	292 aa	Predicted RBP	12.76	□□□□□ -0.37
TCF4-222	ENST00000564228	DHX40	Q8IX18	779 aa	Known RBP	12.76	□□□□□ -0.37
TCF4-222	ENST00000564228	RPGR	Q92834	1020 aa	Known RBP	12.76	□□□□□ -0.37
TCF4-222	ENST00000564228	LARP6	Q9BRS8	491 aa	Known RBP	12.76	□□□□□ -0.37
TCF4-222	ENST00000564228	GPR108	Q9NPR9	543 aa		12.76	□□□□□ -0.37
TCF4-222	ENST00000564228	AKAP2	Q9Y2D5	859 aa		12.76	□□□□□ -0.37
TCF4-222	ENST00000564228	RRP15	Q9Y3B9	282 aa	Known RBP	12.76	□□□□□ -0.37
TCF4-222	ENST00000564228	MROH5	Q6ZUA9	1318 aa		12.76	□□□□□ -0.37
TCF4-222	ENST00000564228	RPS6KA5	O75582	802 aa		12.76	□□□□□ -0.37
TCF4-222	ENST00000564228	TBC1D8	O95759	1140 aa		12.76	□□□□□ -0.37
TCF4-222	ENST00000564228	SMC1A	Q14683	1233 aa	Known RBP	12.76	□□□□□ -0.37
TCF4-222	ENST00000564228	LRRFIP1	Q32MZ4	808 aa	Known RBP	12.76	□□□□□ -0.37
TCF4-222	ENST00000564228	C10orf67	Q8IYJ2	551 aa		12.76	□□□□□ -0.37
TCF4-222	ENST00000564228	LRRN4CL	Q8ND94	238 aa		12.76	□□□□□ -0.37
TCF4-222	ENST00000564228	MNS1	Q8NEH6	495 aa		12.76	□□□□□ -0.37
TCF4-222	ENST00000564228	SPOCK2	Q92563	424 aa		12.76	□□□□□ -0.37
TCF4-222	ENST00000564228	NAT10	Q9H0A0	1025 aa	Known RBP	12.76	□□□□□ -0.37
TCF4-222	ENST00000564228	ARAP2	Q8WZ64	1704 aa		12.75	□□□□□ -0.37
TCF4-222	ENST00000564228	TAF5L	O75529	589 aa		12.75	□□□□□ -0.37
TCF4-222	ENST00000564228	GLRX3	O76003	335 aa	Known RBP	12.75	□□□□□ -0.37
TCF4-222	ENST00000564228	PDE8B	O95263	885 aa		12.75	□□□□□ -0.37
TCF4-222	ENST00000564228	GUCY2C	P25092	1073 aa		12.75	□□□□□ -0.37
TCF4-222	ENST00000564228	RPS8	P62241	208 aa	Known RBP	12.75	□□□□□ -0.37
TCF4-222	ENST00000564228	CHRND	Q07001	517 aa		12.75	□□□□□ -0.37
TCF4-222	ENST00000564228	CC2D1A	Q6P1N0	951 aa	Predicted RBP	12.75	□□□□□ -0.37
TCF4-222	ENST00000564228	FERMT3	Q86UX7	667 aa		12.75	□□□□□ -0.37
TCF4-222	ENST00000564228	CEP57L1	Q8IYX8	460 aa		12.75	□□□□□ -0.37
TCF4-222	ENST00000564228	GPR161	Q8N6U8	529 aa	Known RBP	12.75	□□□□□ -0.37
TCF4-222	ENST00000564228	VGLL2	Q8N8G2	317 aa		12.75	□□□□□ -0.37
TCF4-222	ENST00000564228	COL11A2	P13942	1736 aa	Predicted RBP	12.75	□□□□□ -0.37
TCF4-222	ENST00000564228	CPA1	P15085	419 aa		12.74	□□□□□ -0.37
TCF4-222	ENST00000564228	ZKSCAN1	P17029	563 aa	Predicted RBP	12.74	□□□□□ -0.37
TCF4-222	ENST00000564228	PSMA5	P28066	241 aa		12.74	□□□□□ -0.37
TCF4-222	ENST00000564228	ADORA1	P30542	326 aa		12.74	□□□□□ -0.37
TCF4-222	ENST00000564228	ACTN2	P35609	894 aa		12.74	□□□□□ -0.37
TCF4-222	ENST00000564228	JAKMIP3	Q5VZ66	844 aa		12.74	□□□□□ -0.37
TCF4-222	ENST00000564228	NBPF11	Q86T75	865 aa		12.74	□□□□□ -0.37
TCF4-222	ENST00000564228	CERS3	Q8IU89	383 aa		12.74	□□□□□ -0.37
TCF4-222	ENST00000564228	REXO1L1P	Q8IX06	675 aa		12.74	□□□□□ -0.37
TCF4-222	ENST00000564228	MYCBP	Q99417	103 aa	Predicted RBP	12.74	□□□□□ -0.37
TCF4-222	ENST00000564228	NCAPG	Q9BPX3	1015 aa		12.74	□□□□□ -0.37
TCF4-222	ENST00000564228	BOLA2	Q9H3K6	86 aa		12.74	□□□□□ -0.37
TCF4-222	ENST00000564228	BSDC1	Q9NW68	430 aa	Predicted RBP	12.74	□□□□□ -0.37
TCF4-222	ENST00000564228	CFAP45	Q9UL16	551 aa		12.74	□□□□□ -0.37
TCF4-222	ENST00000564228	TPCN1	Q9ULQ1	816 aa		12.74	□□□□□ -0.37
TCF4-222	ENST00000564228	SNAP23	O00161	211 aa		12.74	□□□□□ -0.37
TCF4-222	ENST00000564228	MAGEA9	P43362	315 aa		12.74	□□□□□ -0.37
TCF4-222	ENST00000564228	NECTIN1	Q15223	517 aa		12.74	□□□□□ -0.37
TCF4-222	ENST00000564228	PUM3	Q15397	648 aa	Known RBP	12.74	□□□□□ -0.37
TCF4-222	ENST00000564228	CRY2	Q49AN0	593 aa		12.74	□□□□□ -0.37
TCF4-222	ENST00000564228	GORAB	Q5T7V8	394 aa		12.74	□□□□□ -0.37
TCF4-222	ENST00000564228	MSL3	Q8N5Y2	521 aa	Known RBP	12.74	□□□□□ -0.37
TCF4-222	ENST00000564228	NECAB1	Q8N987	351 aa		12.74	□□□□□ -0.37
TCF4-222	ENST00000564228	XAGE2	Q96GT9	111 aa		12.74	□□□□□ -0.37
TCF4-222	ENST00000564228	BPIFA3	Q9BQP9	254 aa		12.74	□□□□□ -0.37
TCF4-222	ENST00000564228	BRIP1	Q9BX63	1249 aa		12.74	□□□□□ -0.37
TCF4-222	ENST00000564228	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	12.74	□□□□□ -0.37
TCF4-222	ENST00000564228	TRIM66	O15016	1216 aa		12.73	□□□□□ -0.37
TCF4-222	ENST00000564228	SFPQ	P23246	707 aa	Known RBP eCLIP	12.73	□□□□□ -0.37
TCF4-222	ENST00000564228	REST	Q13127	1097 aa		12.73	□□□□□ -0.37
TCF4-222	ENST00000564228	GRAP	Q13588	217 aa		12.73	□□□□□ -0.37
TCF4-222	ENST00000564228	ADCK5	Q3MIX3	580 aa		12.73	□□□□□ -0.37
TCF4-222	ENST00000564228	FAM173B	Q6P4H8	233 aa		12.73	□□□□□ -0.37
TCF4-222	ENST00000564228	GRAPL	Q8TC17	118 aa	Predicted RBP	12.73	□□□□□ -0.37
TCF4-222	ENST00000564228	RBM17	Q96I25	401 aa	Known RBP	12.73	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms