RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 LAMB1P07942 1786 aa15.21■□□□□ 0.03
CLK3-214ENST00000564096 SBF1O95248 1867 aa15.21■□□□□ 0.03
CLK3-214ENST00000564096 NT5C2P49902 561 aa15.21■□□□□ 0.03
CLK3-214ENST00000564096 HAND2P61296 217 aa15.21■□□□□ 0.03
CLK3-214ENST00000564096 PICALMQ13492 652 aa15.21■□□□□ 0.03
CLK3-214ENST00000564096 KIF4BQ2VIQ3 1234 aa15.21■□□□□ 0.03
CLK3-214ENST00000564096 MAPKAPK5Q8IW41 473 aa15.21■□□□□ 0.03
CLK3-214ENST00000564096 JAKMIP1Q96N16 626 aaKnown RBP15.21■□□□□ 0.03
CLK3-214ENST00000564096 IDI2Q9BXS1 227 aa15.21■□□□□ 0.03
CLK3-214ENST00000564096 TM6SF1Q9BZW5 370 aa15.21■□□□□ 0.03
CLK3-214ENST00000564096 CNNM2Q9H8M5 875 aa15.21■□□□□ 0.03
CLK3-214ENST00000564096 ROBO3Q96MS0 1386 aa15.21■□□□□ 0.02
CLK3-214ENST00000564096 COL2A1P02458 1487 aaPredicted RBP15.2■□□□□ 0.02
CLK3-214ENST00000564096 DDX60LQ5H9U9 1706 aaKnown RBP15.2■□□□□ 0.02
CLK3-214ENST00000564096 WDHD1O75717 1129 aaPredicted RBP15.2■□□□□ 0.02
CLK3-214ENST00000564096 POLR3DP05423 398 aaPredicted RBP15.2■□□□□ 0.02
CLK3-214ENST00000564096 HLA-DOAP06340 250 aa15.2■□□□□ 0.02
CLK3-214ENST00000564096 TNFAIP1Q13829 316 aa15.2■□□□□ 0.02
CLK3-214ENST00000564096 SBK1Q52WX2 424 aa15.2■□□□□ 0.02
CLK3-214ENST00000564096 RASEFQ8IZ41 740 aa15.2■□□□□ 0.02
CLK3-214ENST00000564096 OSBPL5Q9H0X9 879 aaPredicted RBP15.2■□□□□ 0.02
CLK3-214ENST00000564096 ZNF287Q9HBT7 754 aa15.2■□□□□ 0.02
CLK3-214ENST00000564096 GPRC5DQ9NZD1 345 aa15.2■□□□□ 0.02
CLK3-214ENST00000564096 CNOT7Q9UIV1 285 aaKnown RBP15.2■□□□□ 0.02
CLK3-214ENST00000564096 CYP46A1Q9Y6A2 500 aa15.2■□□□□ 0.02
CLK3-214ENST00000564096 MINDY4BA8MYZ0 360 aa15.19■□□□□ 0.02
CLK3-214ENST00000564096 ENTPD3O75355 529 aa15.19■□□□□ 0.02
CLK3-214ENST00000564096 CASTP20810 708 aaKnown RBP15.19■□□□□ 0.02
CLK3-214ENST00000564096 SPDYE2Q495Y8 402 aa15.19■□□□□ 0.02
CLK3-214ENST00000564096 CTR9Q6PD62 1173 aa15.19■□□□□ 0.02
CLK3-214ENST00000564096 BLOC1S2Q6QNY1 142 aa15.19■□□□□ 0.02
CLK3-214ENST00000564096 TTC6Q86TZ1 520 aa15.19■□□□□ 0.02
CLK3-214ENST00000564096 NCOA7Q8NI08 942 aa15.19■□□□□ 0.02
CLK3-214ENST00000564096 STAG1Q8WVM7 1258 aa15.19■□□□□ 0.02
CLK3-214ENST00000564096 NEK1Q96PY6 1258 aa15.19■□□□□ 0.02
CLK3-214ENST00000564096 DHX36Q9H2U1 1008 aaKnown RBP15.19■□□□□ 0.02
CLK3-214ENST00000564096 MKRN1Q9UHC7 482 aaKnown RBP15.19■□□□□ 0.02
CLK3-214ENST00000564096 ANAPC4Q9UJX5 808 aa15.19■□□□□ 0.02
CLK3-214ENST00000564096 TAOK2Q9UL54 1235 aa15.19■□□□□ 0.02
CLK3-214ENST00000564096 FOCADQ5VW36 1801 aa15.18■□□□□ 0.02
CLK3-214ENST00000564096 USP17L12C9JPN9 530 aa15.18■□□□□ 0.02
CLK3-214ENST00000564096 USP17L21D6R901 530 aa15.18■□□□□ 0.02
CLK3-214ENST00000564096 E7EWF7 191 aa15.18■□□□□ 0.02
CLK3-214ENST00000564096 TNNI2P48788 182 aa15.18■□□□□ 0.02
CLK3-214ENST00000564096 PDE4BQ07343 736 aa15.18■□□□□ 0.02
CLK3-214ENST00000564096 BECN1Q14457 450 aa15.18■□□□□ 0.02
CLK3-214ENST00000564096 AKNAD1Q5T1N1 836 aa15.18■□□□□ 0.02
CLK3-214ENST00000564096 FKBP1CQ5VVH2 108 aa15.18■□□□□ 0.02
CLK3-214ENST00000564096 MFSD6Q6ZSS7 791 aa15.18■□□□□ 0.02
CLK3-214ENST00000564096 TBC1D10CQ8IV04 446 aa15.18■□□□□ 0.02
CLK3-214ENST00000564096 HSCBQ8IWL3 235 aa15.18■□□□□ 0.02
CLK3-214ENST00000564096 L3MBTL3Q96JM7 780 aaPredicted RBP15.18■□□□□ 0.02
CLK3-214ENST00000564096 PRMT6Q96LA8 375 aaPredicted RBP15.18■□□□□ 0.02
CLK3-214ENST00000564096 KIF2CQ99661 725 aa15.18■□□□□ 0.02
CLK3-214ENST00000564096 KRT23Q9C075 422 aa15.18■□□□□ 0.02
CLK3-214ENST00000564096 TDRD3Q9H7E2 651 aaKnown RBP15.18■□□□□ 0.02
CLK3-214ENST00000564096 VEZTQ9HBM0 779 aa15.18■□□□□ 0.02
CLK3-214ENST00000564096 GOLGB1Q14789 3259 aaKnown RBP15.18■□□□□ 0.02
CLK3-214ENST00000564096 IQCA1LA6NCM1 817 aa15.17■□□□□ 0.02
CLK3-214ENST00000564096 WNT10BO00744 389 aa15.17■□□□□ 0.02
CLK3-214ENST00000564096 C12orf60Q5U649 245 aa15.17■□□□□ 0.02
CLK3-214ENST00000564096 ZBED3Q96IU2 234 aaPredicted RBP15.17■□□□□ 0.02
CLK3-214ENST00000564096 TRIM34Q9BYJ4 488 aa15.17■□□□□ 0.02
CLK3-214ENST00000564096 TOMM22Q9NS69 142 aa15.17■□□□□ 0.02
CLK3-214ENST00000564096 ZNF70Q9UC06 446 aaPredicted RBP15.17■□□□□ 0.02
CLK3-214ENST00000564096 SAP30BPQ9UHR5 308 aaKnown RBP15.17■□□□□ 0.02
CLK3-214ENST00000564096 PCDHAC2Q9Y5I4 1007 aa15.17■□□□□ 0.02
CLK3-214ENST00000564096 ATRNL1Q5VV63 1379 aa15.16■□□□□ 0.02
CLK3-214ENST00000564096 ECM29Q5VYK3 1845 aa15.16■□□□□ 0.02
CLK3-214ENST00000564096 CLRN2A0PK11 232 aa15.16■□□□□ 0.02
CLK3-214ENST00000564096 GLTPD2A6NH11 291 aa15.16■□□□□ 0.02
CLK3-214ENST00000564096 DDNO94850 711 aaPredicted RBP15.16■□□□□ 0.02
CLK3-214ENST00000564096 MCM2P49736 904 aa15.16■□□□□ 0.02
CLK3-214ENST00000564096 NEK4P51957 841 aa15.16■□□□□ 0.02
CLK3-214ENST00000564096 NFIAQ12857 509 aa15.16■□□□□ 0.02
CLK3-214ENST00000564096 ADCK5Q3MIX3 580 aa15.16■□□□□ 0.02
CLK3-214ENST00000564096 TBC1D10BQ4KMP7 808 aaPredicted RBP15.16■□□□□ 0.02
CLK3-214ENST00000564096 RUFY3Q7L099 469 aa15.16■□□□□ 0.02
CLK3-214ENST00000564096 APOBEC3FQ8IUX4 373 aaKnown RBP15.16■□□□□ 0.02
CLK3-214ENST00000564096 ESR2Q92731 530 aa15.16■□□□□ 0.02
CLK3-214ENST00000564096 UPF3BQ9BZI7 483 aaKnown RBP15.16■□□□□ 0.02
CLK3-214ENST00000564096 ZSWIM6Q9HCJ5 1215 aa15.16■□□□□ 0.02
CLK3-214ENST00000564096 DDX4Q9NQI0 724 aaKnown RBP15.16■□□□□ 0.02
CLK3-214ENST00000564096 ADARB2Q9NS39 739 aaKnown RBP15.16■□□□□ 0.02
CLK3-214ENST00000564096 NEDD4P46934 1319 aa15.16■□□□□ 0.02
CLK3-214ENST00000564096 WDR19Q8NEZ3 1342 aa15.16■□□□□ 0.02
CLK3-214ENST00000564096 RPS6KB1P23443 525 aa15.15■□□□□ 0.02
CLK3-214ENST00000564096 MCM5P33992 734 aa15.15■□□□□ 0.02
CLK3-214ENST00000564096 CACNB3P54284 484 aa15.15■□□□□ 0.02
CLK3-214ENST00000564096 FGD1P98174 961 aa15.15■□□□□ 0.02
CLK3-214ENST00000564096 CTDSPL2Q05D32 466 aa15.15■□□□□ 0.02
CLK3-214ENST00000564096 ANKRD1Q15327 319 aa15.15■□□□□ 0.02
CLK3-214ENST00000564096 RBM26Q5T8P6 1007 aaKnown RBP15.15■□□□□ 0.02
CLK3-214ENST00000564096 STOX1Q6ZVD7 989 aa15.15■□□□□ 0.02
CLK3-214ENST00000564096 SAMD7Q7Z3H4 446 aa15.15■□□□□ 0.02
CLK3-214ENST00000564096 FAM83AQ86UY5 434 aa15.15■□□□□ 0.02
CLK3-214ENST00000564096 ZSCAN29Q8IWY8 852 aaPredicted RBP15.15■□□□□ 0.02
CLK3-214ENST00000564096 EHD4Q9H223 541 aa15.15■□□□□ 0.02
CLK3-214ENST00000564096 PDRG1Q9NUG6 133 aa15.15■□□□□ 0.02
CLK3-214ENST00000564096 DAXXQ9UER7 740 aaPredicted RBP15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms