RNA–Protein interactions for RNA: ENST00000563790.5

HDGFL3-204, Transcript of HDGF like 3, humanhuman

TSL 3

Gene HDGFL3, Length 934 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-204ENST00000563790 TRIM43BA6NCK2 446 aa14.31□□□□□ -0.12
HDGFL3-204ENST00000563790 DCXO43602 365 aa14.31□□□□□ -0.12
HDGFL3-204ENST00000563790 CDCA8Q53HL2 280 aa14.31□□□□□ -0.12
HDGFL3-204ENST00000563790 GPAT2Q6NUI2 795 aa14.31□□□□□ -0.12
HDGFL3-204ENST00000563790 ZKSCAN4Q969J2 545 aaPredicted RBP14.31□□□□□ -0.12
HDGFL3-204ENST00000563790 TRIM43Q96BQ3 446 aaPredicted RBP14.31□□□□□ -0.12
HDGFL3-204ENST00000563790 RPAP1Q9BWH6 1393 aaPredicted RBP14.31□□□□□ -0.12
HDGFL3-204ENST00000563790 ATP2B4P23634 1241 aa14.3□□□□□ -0.12
HDGFL3-204ENST00000563790 CCDC129Q6ZRS4 1044 aa14.3□□□□□ -0.12
HDGFL3-204ENST00000563790 SH3RF1Q7Z6J0 888 aa14.3□□□□□ -0.12
HDGFL3-204ENST00000563790 FAM178BQ8IXR5 827 aa14.3□□□□□ -0.12
HDGFL3-204ENST00000563790 HLA-CQ95604 372 aa14.3□□□□□ -0.12
HDGFL3-204ENST00000563790 COA1Q9GZY4 146 aa14.3□□□□□ -0.12
HDGFL3-204ENST00000563790 GJD2Q9UKL4 321 aa14.3□□□□□ -0.12
HDGFL3-204ENST00000563790 ZZEF1O43149 2961 aa14.29□□□□□ -0.12
HDGFL3-204ENST00000563790 POU3F3P20264 500 aaPredicted RBP14.29□□□□□ -0.12
HDGFL3-204ENST00000563790 CFAP100Q494V2 611 aa14.29□□□□□ -0.12
HDGFL3-204ENST00000563790 IER5LQ5T953 404 aa14.29□□□□□ -0.12
HDGFL3-204ENST00000563790 WRNIP1Q96S55 665 aa14.29□□□□□ -0.12
HDGFL3-204ENST00000563790 GRXCR1A8MXD5 290 aa14.28□□□□□ -0.12
HDGFL3-204ENST00000563790 HELZ2Q9BYK8 2649 aaKnown RBP14.28□□□□□ -0.12
HDGFL3-204ENST00000563790 FAM86C1Q9NVL1 165 aa14.28□□□□□ -0.12
HDGFL3-204ENST00000563790 PROB1E7EW31 1015 aa14.27□□□□□ -0.13
HDGFL3-204ENST00000563790 SNX17Q15036 470 aa14.27□□□□□ -0.13
HDGFL3-204ENST00000563790 HSP90AB3PQ58FF7 597 aa14.27□□□□□ -0.13
HDGFL3-204ENST00000563790 RAB30Q15771 203 aa14.26□□□□□ -0.13
HDGFL3-204ENST00000563790 TMEM39BQ9GZU3 492 aa14.26□□□□□ -0.13
HDGFL3-204ENST00000563790 PHIPQ8WWQ0 1821 aa14.26□□□□□ -0.13
HDGFL3-204ENST00000563790 FRYQ5TBA9 3013 aa14.26□□□□□ -0.13
HDGFL3-204ENST00000563790 CCND3P30281 292 aaPredicted RBP14.25□□□□□ -0.13
HDGFL3-204ENST00000563790 SSTR3P32745 418 aaPredicted RBP14.25□□□□□ -0.13
HDGFL3-204ENST00000563790 FPGSQ05932 587 aa14.25□□□□□ -0.13
HDGFL3-204ENST00000563790 CACNB2Q08289 660 aaPredicted RBP14.25□□□□□ -0.13
HDGFL3-204ENST00000563790 ST3GAL2Q16842 350 aa14.25□□□□□ -0.13
HDGFL3-204ENST00000563790 SPDYE2Q495Y8 402 aa14.25□□□□□ -0.13
HDGFL3-204ENST00000563790 SLC39A5Q6ZMH5 540 aa14.25□□□□□ -0.13
HDGFL3-204ENST00000563790 ASCL5Q7RTU5 278 aa14.25□□□□□ -0.13
HDGFL3-204ENST00000563790 SLC28A3Q9HAS3 691 aa14.25□□□□□ -0.13
HDGFL3-204ENST00000563790 MSRAQ9UJ68 235 aa14.25□□□□□ -0.13
HDGFL3-204ENST00000563790 MTCH2Q9Y6C9 303 aa14.25□□□□□ -0.13
HDGFL3-204ENST00000563790 MYH3P11055 1940 aa14.24□□□□□ -0.13
HDGFL3-204ENST00000563790 DNM1LO00429 736 aa14.24□□□□□ -0.13
HDGFL3-204ENST00000563790 GTF2IP78347 998 aa14.24□□□□□ -0.13
HDGFL3-204ENST00000563790 TRIM60Q495X7 471 aa14.24□□□□□ -0.13
HDGFL3-204ENST00000563790 RASIP1Q5U651 963 aa14.24□□□□□ -0.13
HDGFL3-204ENST00000563790 CERS5Q8N5B7 392 aa14.24□□□□□ -0.13
HDGFL3-204ENST00000563790 RALYQ9UKM9 306 aaKnown RBP14.24□□□□□ -0.13
HDGFL3-204ENST00000563790 SLC45A1Q9Y2W3 748 aa14.24□□□□□ -0.13
HDGFL3-204ENST00000563790 FAM110CQ1W6H9 321 aa14.23□□□□□ -0.13
HDGFL3-204ENST00000563790 LRP10Q7Z4F1 713 aa14.23□□□□□ -0.13
HDGFL3-204ENST00000563790 IRF2BPLQ9H1B7 796 aa14.23□□□□□ -0.13
HDGFL3-204ENST00000563790 SEC31BQ9NQW1 1179 aa14.23□□□□□ -0.13
HDGFL3-204ENST00000563790 ZNF70Q9UC06 446 aaPredicted RBP14.23□□□□□ -0.13
HDGFL3-204ENST00000563790 TRPC6Q9Y210 931 aa14.23□□□□□ -0.13
HDGFL3-204ENST00000563790 DAGLAQ9Y4D2 1042 aa14.23□□□□□ -0.13
HDGFL3-204ENST00000563790 ZBTB22O15209 634 aa14.22□□□□□ -0.13
HDGFL3-204ENST00000563790 DSG3P32926 999 aa14.22□□□□□ -0.13
HDGFL3-204ENST00000563790 DGLUCYQ7Z3D6 616 aa14.22□□□□□ -0.13
HDGFL3-204ENST00000563790 ANKRD13CQ8N6S4 541 aa14.22□□□□□ -0.13
HDGFL3-204ENST00000563790 SMCR8Q8TEV9 937 aaPredicted RBP14.22□□□□□ -0.13
HDGFL3-204ENST00000563790 SIN3AQ96ST3 1273 aa14.22□□□□□ -0.13
HDGFL3-204ENST00000563790 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.22□□□□□ -0.13
HDGFL3-204ENST00000563790 ALG13Q9NP73 1137 aaKnown RBP14.22□□□□□ -0.13
HDGFL3-204ENST00000563790 GAKO14976 1311 aa14.21□□□□□ -0.13
HDGFL3-204ENST00000563790 SOWAHBA6NEL2 793 aa14.21□□□□□ -0.13
HDGFL3-204ENST00000563790 PRR23AA6NEV1 266 aa14.21□□□□□ -0.13
HDGFL3-204ENST00000563790 GTPBP6O43824 516 aaPredicted RBP14.21□□□□□ -0.13
HDGFL3-204ENST00000563790 XRCC5P13010 732 aaKnown RBP14.21□□□□□ -0.13
HDGFL3-204ENST00000563790 NKX2-4Q9H2Z4 354 aa14.21□□□□□ -0.13
HDGFL3-204ENST00000563790 TACC3Q9Y6A5 838 aa14.21□□□□□ -0.13
HDGFL3-204ENST00000563790 USP9XQ93008 2570 aaPredicted RBP14.21□□□□□ -0.14
HDGFL3-204ENST00000563790 MYBBP1AQ9BQG0 1328 aaKnown RBP14.2□□□□□ -0.14
HDGFL3-204ENST00000563790 CXCL11O14625 94 aa14.2□□□□□ -0.14
HDGFL3-204ENST00000563790 KIAA0355O15063 1070 aa14.2□□□□□ -0.14
HDGFL3-204ENST00000563790 TNNI2P48788 182 aa14.2□□□□□ -0.14
HDGFL3-204ENST00000563790 C1orf53Q5VUE5 145 aa14.2□□□□□ -0.14
HDGFL3-204ENST00000563790 TXNRD3Q86VQ6 643 aa14.2□□□□□ -0.14
HDGFL3-204ENST00000563790 TRMT44Q8IYL2 757 aaKnown RBP14.2□□□□□ -0.14
HDGFL3-204ENST00000563790 FAM89AQ96GI7 184 aa14.2□□□□□ -0.14
HDGFL3-204ENST00000563790 BSDC1Q9NW68 430 aaPredicted RBP14.2□□□□□ -0.14
HDGFL3-204ENST00000563790 DACH1Q9UI36 760 aa14.2□□□□□ -0.14
HDGFL3-204ENST00000563790 SMCHD1A6NHR9 2005 aa14.19□□□□□ -0.14
HDGFL3-204ENST00000563790 PKN1Q16512 942 aa14.19□□□□□ -0.14
HDGFL3-204ENST00000563790 SAMD1Q6SPF0 538 aaPredicted RBP14.19□□□□□ -0.14
HDGFL3-204ENST00000563790 FASTKD5Q7L8L6 764 aaKnown RBP14.19□□□□□ -0.14
HDGFL3-204ENST00000563790 BMP8AQ7Z5Y6 402 aa14.19□□□□□ -0.14
HDGFL3-204ENST00000563790 LPAR1Q92633 364 aa14.19□□□□□ -0.14
HDGFL3-204ENST00000563790 ATOH1Q92858 354 aaPredicted RBP14.19□□□□□ -0.14
HDGFL3-204ENST00000563790 NBEAQ8NFP9 2946 aa14.18□□□□□ -0.14
HDGFL3-204ENST00000563790 SPEGQ15772 3267 aa14.18□□□□□ -0.14
HDGFL3-204ENST00000563790 TCP10L2B9ZVM9 353 aa14.18□□□□□ -0.14
HDGFL3-204ENST00000563790 F8W031 263 aaPredicted RBP14.18□□□□□ -0.14
HDGFL3-204ENST00000563790 HOXB3P14651 431 aaPredicted RBP14.18□□□□□ -0.14
HDGFL3-204ENST00000563790 RAG1P15918 1043 aa14.18□□□□□ -0.14
HDGFL3-204ENST00000563790 CYP2B6P20813 491 aa14.18□□□□□ -0.14
HDGFL3-204ENST00000563790 INPP5BP32019 993 aa14.18□□□□□ -0.14
HDGFL3-204ENST00000563790 YBX2Q9Y2T7 364 aaKnown RBP14.18□□□□□ -0.14
HDGFL3-204ENST00000563790 COL4A4P53420 1690 aaPredicted RBP14.17□□□□□ -0.14
HDGFL3-204ENST00000563790 CLTBP09497 229 aa14.17□□□□□ -0.14
HDGFL3-204ENST00000563790 ZKSCAN1P17029 563 aaPredicted RBP14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms