RNA–Protein interactions for RNA: ENST00000560679.1

TPM1-225, Transcript of tropomyosin 1, humanhuman

TSL 3

Gene TPM1, Length 292 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-225ENST00000560679 BICC1Q9H694 974 aaKnown RBP12.51□□□□□ -0.41
TPM1-225ENST00000560679 C9orf78Q9NZ63 289 aaPredicted RBP12.51□□□□□ -0.41
TPM1-225ENST00000560679 KIF16BQ96L93 1317 aa12.51□□□□□ -0.41
TPM1-225ENST00000560679 PHF20L1A8MW92 1017 aa12.5□□□□□ -0.41
TPM1-225ENST00000560679 ALDH1L1O75891 902 aa12.5□□□□□ -0.41
TPM1-225ENST00000560679 PDE8BO95263 885 aa12.5□□□□□ -0.41
TPM1-225ENST00000560679 NBPF7P0C2Y1 421 aaPredicted RBP12.5□□□□□ -0.41
TPM1-225ENST00000560679 FGFR2P21802 821 aa12.5□□□□□ -0.41
TPM1-225ENST00000560679 EXOSC9Q06265 439 aaKnown RBP12.5□□□□□ -0.41
TPM1-225ENST00000560679 CCDC184Q52MB2 194 aa12.5□□□□□ -0.41
TPM1-225ENST00000560679 CAVIN4Q5BKX8 364 aa12.5□□□□□ -0.41
TPM1-225ENST00000560679 ZMYND8Q9ULU4 1186 aaPredicted RBP12.5□□□□□ -0.41
TPM1-225ENST00000560679 STXBP5LQ9Y2K9 1186 aa12.5□□□□□ -0.41
TPM1-225ENST00000560679 UTYO14607 1347 aa12.5□□□□□ -0.41
TPM1-225ENST00000560679 LOC285556D6RIA3 1793 aa12.5□□□□□ -0.41
TPM1-225ENST00000560679 PLXNB2O15031 1838 aa12.49□□□□□ -0.41
TPM1-225ENST00000560679 TNPO2O14787 897 aaKnown RBP12.49□□□□□ -0.41
TPM1-225ENST00000560679 SLURP2P0DP57 97 aa12.49□□□□□ -0.41
TPM1-225ENST00000560679 LRIT3Q3SXY7 679 aa12.49□□□□□ -0.41
TPM1-225ENST00000560679 NECAB2Q7Z6G3 386 aa12.49□□□□□ -0.41
TPM1-225ENST00000560679 KLHDC4Q8TBB5 520 aa12.49□□□□□ -0.41
TPM1-225ENST00000560679 SRCIN1Q9C0H9 1055 aa12.49□□□□□ -0.41
TPM1-225ENST00000560679 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.49□□□□□ -0.41
TPM1-225ENST00000560679 SPINK5Q9NQ38 1064 aaPredicted RBP12.49□□□□□ -0.41
TPM1-225ENST00000560679 MTMR10Q9NXD2 777 aa12.49□□□□□ -0.41
TPM1-225ENST00000560679 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.49□□□□□ -0.41
TPM1-225ENST00000560679 SLC45A1Q9Y2W3 748 aa12.49□□□□□ -0.41
TPM1-225ENST00000560679 AFG3L2Q9Y4W6 797 aa12.49□□□□□ -0.41
TPM1-225ENST00000560679 PTPRAP18433 802 aa12.48□□□□□ -0.41
TPM1-225ENST00000560679 PRDX5P30044 214 aa12.48□□□□□ -0.41
TPM1-225ENST00000560679 MAGEA10P43363 369 aaPredicted RBP12.48□□□□□ -0.41
TPM1-225ENST00000560679 GADL1Q6ZQY3 521 aa12.48□□□□□ -0.41
TPM1-225ENST00000560679 SH3BP5LQ7L8J4 393 aa12.48□□□□□ -0.41
TPM1-225ENST00000560679 SCYL3Q8IZE3 742 aa12.48□□□□□ -0.41
TPM1-225ENST00000560679 COL25A1Q9BXS0 654 aaPredicted RBP12.48□□□□□ -0.41
TPM1-225ENST00000560679 ZHX2Q9Y6X8 837 aa12.48□□□□□ -0.41
TPM1-225ENST00000560679 CDH23Q9H251 3354 aa12.48□□□□□ -0.41
TPM1-225ENST00000560679 SYN1P17600 705 aa12.47□□□□□ -0.41
TPM1-225ENST00000560679 CAPN2P17655 700 aa12.47□□□□□ -0.41
TPM1-225ENST00000560679 TRIM32Q13049 653 aa12.47□□□□□ -0.41
TPM1-225ENST00000560679 PUM3Q15397 648 aaKnown RBP12.47□□□□□ -0.41
TPM1-225ENST00000560679 SLC4A10Q6U841 1118 aa12.47□□□□□ -0.41
TPM1-225ENST00000560679 FASTKD5Q7L8L6 764 aaKnown RBP12.47□□□□□ -0.41
TPM1-225ENST00000560679 CCDC84Q86UT8 332 aaPredicted RBP12.47□□□□□ -0.41
TPM1-225ENST00000560679 TAOK2Q9UL54 1235 aa12.47□□□□□ -0.41
TPM1-225ENST00000560679 COL2A1P02458 1487 aaPredicted RBP12.46□□□□□ -0.41
TPM1-225ENST00000560679 DNAH12Q6ZR08 3092 aa12.46□□□□□ -0.41
TPM1-225ENST00000560679 NCBP3Q53F19 620 aaKnown RBP12.46□□□□□ -0.41
TPM1-225ENST00000560679 TREML2Q5T2D2 321 aa12.46□□□□□ -0.41
TPM1-225ENST00000560679 TDHQ8IZJ6 230 aa12.46□□□□□ -0.41
TPM1-225ENST00000560679 ANKRD13CQ8N6S4 541 aa12.46□□□□□ -0.41
TPM1-225ENST00000560679 ANKLE1Q8NAG6 615 aa12.46□□□□□ -0.41
TPM1-225ENST00000560679 WDR66Q8TBY9 1149 aa12.46□□□□□ -0.41
TPM1-225ENST00000560679 SMCR8Q8TEV9 937 aaPredicted RBP12.46□□□□□ -0.41
TPM1-225ENST00000560679 PICK1Q9NRD5 415 aa12.46□□□□□ -0.41
TPM1-225ENST00000560679 AGTPBP1Q9UPW5 1226 aa12.46□□□□□ -0.41
TPM1-225ENST00000560679 MYH2Q9UKX2 1941 aa12.46□□□□□ -0.42
TPM1-225ENST00000560679 PRUNE2Q8WUY3 3088 aa12.46□□□□□ -0.42
TPM1-225ENST00000560679 PFASO15067 1338 aa12.45□□□□□ -0.42
TPM1-225ENST00000560679 TRIM75PA6NK02 468 aa12.45□□□□□ -0.42
TPM1-225ENST00000560679 HMGCRP04035 888 aa12.45□□□□□ -0.42
TPM1-225ENST00000560679 IFIT1P09914 478 aaKnown RBP12.45□□□□□ -0.42
TPM1-225ENST00000560679 RGS3P49796 1198 aa12.45□□□□□ -0.42
TPM1-225ENST00000560679 MAP3K10Q02779 954 aa12.45□□□□□ -0.42
TPM1-225ENST00000560679 FAM110CQ1W6H9 321 aa12.45□□□□□ -0.42
TPM1-225ENST00000560679 USP40Q9NVE5 1235 aa12.45□□□□□ -0.42
TPM1-225ENST00000560679 ATAD5Q96QE3 1844 aa12.44□□□□□ -0.42
TPM1-225ENST00000560679 COA7Q96BR5 231 aa12.44□□□□□ -0.42
TPM1-225ENST00000560679 IDI2Q9BXS1 227 aa12.44□□□□□ -0.42
TPM1-225ENST00000560679 NBPF3Q9H094 633 aa12.44□□□□□ -0.42
TPM1-225ENST00000560679 C11orf49Q9H6J7 331 aa12.44□□□□□ -0.42
TPM1-225ENST00000560679 DDX4Q9NQI0 724 aaKnown RBP12.44□□□□□ -0.42
TPM1-225ENST00000560679 GJD2Q9UKL4 321 aa12.44□□□□□ -0.42
TPM1-225ENST00000560679 MUC3AQ02505 3323 aa12.44□□□□□ -0.42
TPM1-225ENST00000560679 MAST2Q6P0Q8 1798 aa12.43□□□□□ -0.42
TPM1-225ENST00000560679 GAKO14976 1311 aa12.43□□□□□ -0.42
TPM1-225ENST00000560679 DDTLA6NHG4 134 aaPredicted RBP12.43□□□□□ -0.42
TPM1-225ENST00000560679 RFX5P48382 616 aaPredicted RBP12.43□□□□□ -0.42
TPM1-225ENST00000560679 WDR63Q8IWG1 891 aa12.43□□□□□ -0.42
TPM1-225ENST00000560679 LPIN2Q92539 896 aa12.43□□□□□ -0.42
TPM1-225ENST00000560679 GUCD1Q96NT3 240 aa12.43□□□□□ -0.42
TPM1-225ENST00000560679 OGDHLQ9ULD0 1010 aa12.43□□□□□ -0.42
TPM1-225ENST00000560679 FRMPD3Q5JV73 1810 aa12.43□□□□□ -0.42
TPM1-225ENST00000560679 RPTORQ8N122 1335 aa12.42□□□□□ -0.42
TPM1-225ENST00000560679 SALL1Q9NSC2 1324 aa12.42□□□□□ -0.42
TPM1-225ENST00000560679 CTNND1O60716 968 aaKnown RBP12.42□□□□□ -0.42
TPM1-225ENST00000560679 ENTPD3O75355 529 aa12.42□□□□□ -0.42
TPM1-225ENST00000560679 LDHBP07195 334 aaKnown RBP12.42□□□□□ -0.42
TPM1-225ENST00000560679 SLC5A1P13866 664 aa12.42□□□□□ -0.42
TPM1-225ENST00000560679 ATG9AQ7Z3C6 839 aa12.42□□□□□ -0.42
TPM1-225ENST00000560679 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.42□□□□□ -0.42
TPM1-225ENST00000560679 TRIB2Q92519 343 aa12.42□□□□□ -0.42
TPM1-225ENST00000560679 UBE2OQ9C0C9 1292 aaKnown RBP12.42□□□□□ -0.42
TPM1-225ENST00000560679 HMX1Q9NP08 348 aaPredicted RBP12.42□□□□□ -0.42
TPM1-225ENST00000560679 FAM196BA6NMK8 535 aa12.41□□□□□ -0.42
TPM1-225ENST00000560679 EYA2O00167 538 aa12.41□□□□□ -0.42
TPM1-225ENST00000560679 MAP3K21Q5TCX8 1036 aa12.41□□□□□ -0.42
TPM1-225ENST00000560679 PROCA1Q8NCQ7 364 aaPredicted RBP12.41□□□□□ -0.42
TPM1-225ENST00000560679 PNMA3Q9UL41 463 aa12.41□□□□□ -0.42
TPM1-225ENST00000560679 SALL2Q9Y467 1007 aaPredicted RBP12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms