RNA–Protein interactions for RNA: ENST00000558911.1

LRRC28-212, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-212ENST00000558911 FAM84AQ96KN4 292 aa5.13□□□□□ -1.59
LRRC28-212ENST00000558911 GSX1Q9H4S2 264 aaPredicted RBP5.13□□□□□ -1.59
LRRC28-212ENST00000558911 SSU72Q9NP77 194 aaKnown RBP5.13□□□□□ -1.59
LRRC28-212ENST00000558911 VAV3Q9UKW4 847 aa5.13□□□□□ -1.59
LRRC28-212ENST00000558911 TMPRSS2O15393 492 aa5.12□□□□□ -1.59
LRRC28-212ENST00000558911 BRD1O95696 1058 aa5.12□□□□□ -1.59
LRRC28-212ENST00000558911 KCNMB1Q16558 191 aa5.12□□□□□ -1.59
LRRC28-212ENST00000558911 CCDC27Q2M243 656 aa5.12□□□□□ -1.59
LRRC28-212ENST00000558911 ANGEL2Q5VTE6 544 aaKnown RBP5.12□□□□□ -1.59
LRRC28-212ENST00000558911 SMYD4Q8IYR2 804 aaPredicted RBP5.12□□□□□ -1.59
LRRC28-212ENST00000558911 FANCD2OSQ96PS1 177 aa5.12□□□□□ -1.59
LRRC28-212ENST00000558911 EHD4Q9H223 541 aa5.12□□□□□ -1.59
LRRC28-212ENST00000558911 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.12□□□□□ -1.59
LRRC28-212ENST00000558911 CARNS1A5YM72 827 aa5.11□□□□□ -1.59
LRRC28-212ENST00000558911 B3GALT4O96024 378 aa5.11□□□□□ -1.59
LRRC28-212ENST00000558911 CEACAM5P06731 702 aa5.11□□□□□ -1.59
LRRC28-212ENST00000558911 SLFN14P0C7P3 912 aa5.11□□□□□ -1.59
LRRC28-212ENST00000558911 RAP1GAPP47736 663 aa5.11□□□□□ -1.59
LRRC28-212ENST00000558911 MESP2Q0VG99 397 aa5.11□□□□□ -1.59
LRRC28-212ENST00000558911 TTLL4Q14679 1199 aa5.11□□□□□ -1.59
LRRC28-212ENST00000558911 ZSWIM9Q86XI8 627 aa5.11□□□□□ -1.59
LRRC28-212ENST00000558911 GALNT12Q8IXK2 581 aa5.11□□□□□ -1.59
LRRC28-212ENST00000558911 ATXN3LQ9H3M9 355 aa5.11□□□□□ -1.59
LRRC28-212ENST00000558911 ZNF576Q9H609 170 aa5.11□□□□□ -1.59
LRRC28-212ENST00000558911 CCDC86Q9H6F5 360 aaKnown RBP5.11□□□□□ -1.59
LRRC28-212ENST00000558911 TMEM265A0A087WTH1 108 aa5.1□□□□□ -1.59
LRRC28-212ENST00000558911 KRTAP9-7A8MTY7 169 aa5.1□□□□□ -1.59
LRRC28-212ENST00000558911 ID3Q02535 119 aa5.1□□□□□ -1.59
LRRC28-212ENST00000558911 ZNF211Q13398 564 aaPredicted RBP5.1□□□□□ -1.59
LRRC28-212ENST00000558911 IKZF1Q13422 519 aa5.1□□□□□ -1.59
LRRC28-212ENST00000558911 TOP6BLQ8N6T0 577 aa5.1□□□□□ -1.59
LRRC28-212ENST00000558911 LIN37Q96GY3 246 aaPredicted RBP5.1□□□□□ -1.59
LRRC28-212ENST00000558911 TOX2Q96NM4 488 aa5.1□□□□□ -1.59
LRRC28-212ENST00000558911 CRIM1Q9NZV1 1036 aa5.1□□□□□ -1.59
LRRC28-212ENST00000558911 PLAGL2Q9UPG8 496 aa5.1□□□□□ -1.59
LRRC28-212ENST00000558911 CECR2Q9BXF3 1484 aa5.09□□□□□ -1.59
LRRC28-212ENST00000558911 UNCXA6NJT0 531 aa5.09□□□□□ -1.59
LRRC28-212ENST00000558911 CFPP27918 469 aa5.09□□□□□ -1.59
LRRC28-212ENST00000558911 OXCT1P55809 520 aa5.09□□□□□ -1.59
LRRC28-212ENST00000558911 MPZL3Q6UWV2 235 aa5.09□□□□□ -1.59
LRRC28-212ENST00000558911 FAM177A1Q8N128 213 aaPredicted RBP5.09□□□□□ -1.59
LRRC28-212ENST00000558911 GJD3Q8N144 294 aa5.09□□□□□ -1.59
LRRC28-212ENST00000558911 ZSCAN18Q8TBC5 510 aaPredicted RBP5.09□□□□□ -1.59
LRRC28-212ENST00000558911 CCER1Q8TC90 406 aaPredicted RBP5.09□□□□□ -1.59
LRRC28-212ENST00000558911 DUSP23Q9BVJ7 150 aa5.09□□□□□ -1.59
LRRC28-212ENST00000558911 CHMP4AQ9BY43 222 aa5.09□□□□□ -1.59
LRRC28-212ENST00000558911 KRTAP4-11Q9BYQ6 195 aa5.09□□□□□ -1.59
LRRC28-212ENST00000558911 NPHS2Q9NP85 383 aa5.09□□□□□ -1.59
LRRC28-212ENST00000558911 IVNS1ABPQ9Y6Y0 642 aa5.09□□□□□ -1.59
LRRC28-212ENST00000558911 ZNF503-AS2A6NEH8 195 aa5.08□□□□□ -1.6
LRRC28-212ENST00000558911 ZNF862O60290 1169 aa5.08□□□□□ -1.6
LRRC28-212ENST00000558911 FKBP4Q02790 459 aaKnown RBP eCLIP5.08□□□□□ -1.6
LRRC28-212ENST00000558911 ZP2Q05996 745 aa5.08□□□□□ -1.6
LRRC28-212ENST00000558911 AP3B2Q13367 1082 aa5.08□□□□□ -1.6
LRRC28-212ENST00000558911 LILRA6Q6PI73 481 aa5.08□□□□□ -1.6
LRRC28-212ENST00000558911 SLC23A3Q6PIS1 610 aa5.08□□□□□ -1.6
LRRC28-212ENST00000558911 SYDE1Q6ZW31 735 aaPredicted RBP5.08□□□□□ -1.6
LRRC28-212ENST00000558911 LRRC56Q8IYG6 542 aaPredicted RBP5.08□□□□□ -1.6
LRRC28-212ENST00000558911 KCNB2Q92953 911 aa5.08□□□□□ -1.6
LRRC28-212ENST00000558911 DISC1Q9NRI5 854 aa5.08□□□□□ -1.6
LRRC28-212ENST00000558911 FAM53CQ9NYF3 392 aa5.08□□□□□ -1.6
LRRC28-212ENST00000558911 PCOLCE2Q9UKZ9 415 aa5.08□□□□□ -1.6
LRRC28-212ENST00000558911 GADD45BO75293 160 aaPredicted RBP5.07□□□□□ -1.6
LRRC28-212ENST00000558911 SSFA2P28290 1259 aa5.07□□□□□ -1.6
LRRC28-212ENST00000558911 ORC1Q13415 861 aa5.07□□□□□ -1.6
LRRC28-212ENST00000558911 ECM1Q16610 540 aa5.07□□□□□ -1.6
LRRC28-212ENST00000558911 FYB2Q5VWT5 728 aa5.07□□□□□ -1.6
LRRC28-212ENST00000558911 PRR23BQ6ZRT6 265 aa5.07□□□□□ -1.6
LRRC28-212ENST00000558911 SND1Q7KZF4 910 aaKnown RBP eCLIP5.07□□□□□ -1.6
LRRC28-212ENST00000558911 PHF6Q8IWS0 365 aaKnown RBP eCLIP5.07□□□□□ -1.6
LRRC28-212ENST00000558911 ZSCAN22P10073 491 aaPredicted RBP5.06□□□□□ -1.6
LRRC28-212ENST00000558911 NPR3P17342 541 aa5.06□□□□□ -1.6
LRRC28-212ENST00000558911 KIAA0319Q5VV43 1072 aa5.06□□□□□ -1.6
LRRC28-212ENST00000558911 ANKLE2Q86XL3 938 aa5.06□□□□□ -1.6
LRRC28-212ENST00000558911 FLAD1Q8NFF5 587 aa5.06□□□□□ -1.6
LRRC28-212ENST00000558911 GPN3Q9UHW5 284 aaPredicted RBP5.06□□□□□ -1.6
LRRC28-212ENST00000558911 USTQ9Y2C2 406 aa5.06□□□□□ -1.6
LRRC28-212ENST00000558911 GSTP1P09211 210 aaKnown RBP5.05□□□□□ -1.6
LRRC28-212ENST00000558911 ITPKAP23677 461 aa5.05□□□□□ -1.6
LRRC28-212ENST00000558911 FAAP100Q0VG06 881 aa5.05□□□□□ -1.6
LRRC28-212ENST00000558911 SF3B2Q13435 895 aaKnown RBP5.05□□□□□ -1.6
LRRC28-212ENST00000558911 KRTAP19-4Q3LI73 84 aa5.05□□□□□ -1.6
LRRC28-212ENST00000558911 LCNL1Q6ZST4 164 aa5.05□□□□□ -1.6
LRRC28-212ENST00000558911 ISL2Q96A47 359 aa5.05□□□□□ -1.6
LRRC28-212ENST00000558911 DIRC2Q96SL1 478 aa5.05□□□□□ -1.6
LRRC28-212ENST00000558911 MKNK2Q9HBH9 465 aa5.05□□□□□ -1.6
LRRC28-212ENST00000558911 LMCD1Q9NZU5 365 aa5.05□□□□□ -1.6
LRRC28-212ENST00000558911 BRPF3Q9ULD4 1205 aa5.05□□□□□ -1.6
LRRC28-212ENST00000558911 B8ZZF3 427 aa5.04□□□□□ -1.6
LRRC28-212ENST00000558911 NEFMP07197 916 aa5.04□□□□□ -1.6
LRRC28-212ENST00000558911 HNRNPUQ00839 825 aaKnown RBP eCLIP5.04□□□□□ -1.6
LRRC28-212ENST00000558911 KIF4BQ2VIQ3 1234 aa5.04□□□□□ -1.6
LRRC28-212ENST00000558911 ASB11Q8WXH4 323 aa5.04□□□□□ -1.6
LRRC28-212ENST00000558911 HEXIM2Q96MH2 286 aaKnown RBP5.04□□□□□ -1.6
LRRC28-212ENST00000558911 PPP1R16BQ96T49 567 aa5.04□□□□□ -1.6
LRRC28-212ENST00000558911 PICK1Q9NRD5 415 aa5.04□□□□□ -1.6
LRRC28-212ENST00000558911 CTNND2Q9UQB3 1225 aa5.04□□□□□ -1.6
LRRC28-212ENST00000558911 CSADQ9Y600 493 aa5.04□□□□□ -1.6
LRRC28-212ENST00000558911 SYNGAP1Q96PV0 1343 aa5.03□□□□□ -1.6
LRRC28-212ENST00000558911 TMEM238LA0A1B0GVL6 79 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms