RNA–Protein interactions for RNA: ENST00000558911.1

LRRC28-212, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-212ENST00000558911 AEBP2Q6ZN18 517 aaPredicted RBP19.82■□□□□ 0.76
LRRC28-212ENST00000558911 CHIC1Q5VXU3 224 aa18.66■□□□□ 0.58
LRRC28-212ENST00000558911 SENP3Q9H4L4 574 aaPredicted RBP16.9■□□□□ 0.3
LRRC28-212ENST00000558911 PHF23Q9BUL5 403 aaPredicted RBP16.71■□□□□ 0.27
LRRC28-212ENST00000558911 FOXD1Q16676 465 aa15.81■□□□□ 0.12
LRRC28-212ENST00000558911 PLPPR3Q6T4P5 718 aa14.87□□□□□ -0.03
LRRC28-212ENST00000558911 MSH5O43196 834 aa14.81□□□□□ -0.04
LRRC28-212ENST00000558911 PIAS4Q8N2W9 510 aaPredicted RBP14.79□□□□□ -0.04
LRRC28-212ENST00000558911 POTEDQ86YR6 584 aa14.73□□□□□ -0.05
LRRC28-212ENST00000558911 PPP6R1Q9UPN7 881 aa14.69□□□□□ -0.06
LRRC28-212ENST00000558911 ADRA2BP18089 450 aa14.68□□□□□ -0.06
LRRC28-212ENST00000558911 MAPK8IP2Q13387 824 aaPredicted RBP13.53□□□□□ -0.24
LRRC28-212ENST00000558911 DMRT2Q9Y5R5 561 aa13.37□□□□□ -0.27
LRRC28-212ENST00000558911 SCAF1Q9H7N4 1312 aaKnown RBP13.37□□□□□ -0.27
LRRC28-212ENST00000558911 PPP4R3CPQ6ZMV5 832 aa13.05□□□□□ -0.32
LRRC28-212ENST00000558911 DCAF8L1A6NGE4 600 aa13.04□□□□□ -0.32
LRRC28-212ENST00000558911 CACNB1Q02641 598 aaPredicted RBP12.89□□□□□ -0.35
LRRC28-212ENST00000558911 HOXD11P31277 338 aaPredicted RBP12.79□□□□□ -0.36
LRRC28-212ENST00000558911 CNKSR2Q8WXI2 1034 aa12.79□□□□□ -0.36
LRRC28-212ENST00000558911 RNF216Q9NWF9 866 aaPredicted RBP12.68□□□□□ -0.38
LRRC28-212ENST00000558911 RNF39Q9H2S5 420 aa12.61□□□□□ -0.39
LRRC28-212ENST00000558911 NCBP3Q53F19 620 aaKnown RBP12.49□□□□□ -0.41
LRRC28-212ENST00000558911 C1QBPQ07021 282 aaKnown RBP12.42□□□□□ -0.42
LRRC28-212ENST00000558911 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.34□□□□□ -0.43
LRRC28-212ENST00000558911 NPM3O75607 178 aaKnown RBP12.32□□□□□ -0.44
LRRC28-212ENST00000558911 DNAJC5BQ9UF47 199 aa12.26□□□□□ -0.45
LRRC28-212ENST00000558911 KCNA4P22459 653 aa12□□□□□ -0.49
LRRC28-212ENST00000558911 U3KPZ7 1027 aaPredicted RBP11.99□□□□□ -0.49
LRRC28-212ENST00000558911 CAPN15O75808 1086 aa11.94□□□□□ -0.5
LRRC28-212ENST00000558911 SPINK5Q9NQ38 1064 aaPredicted RBP11.91□□□□□ -0.5
LRRC28-212ENST00000558911 DSG3P32926 999 aa11.8□□□□□ -0.52
LRRC28-212ENST00000558911 SLC4A2P04920 1241 aa11.78□□□□□ -0.52
LRRC28-212ENST00000558911 TRHP20396 242 aaPredicted RBP11.73□□□□□ -0.53
LRRC28-212ENST00000558911 ABCB7O75027 752 aa11.68□□□□□ -0.54
LRRC28-212ENST00000558911 APLP2Q06481 763 aa11.62□□□□□ -0.55
LRRC28-212ENST00000558911 ZNF219Q9P2Y4 722 aaPredicted RBP11.58□□□□□ -0.56
LRRC28-212ENST00000558911 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.56□□□□□ -0.56
LRRC28-212ENST00000558911 HNRNPUL2Q1KMD3 747 aaKnown RBP11.56□□□□□ -0.56
LRRC28-212ENST00000558911 POTEHQ6S545 545 aa11.52□□□□□ -0.57
LRRC28-212ENST00000558911 SAMD1Q6SPF0 538 aaPredicted RBP11.51□□□□□ -0.57
LRRC28-212ENST00000558911 MYCNP04198 464 aaPredicted RBP11.38□□□□□ -0.59
LRRC28-212ENST00000558911 POLA2Q14181 598 aa11.33□□□□□ -0.6
LRRC28-212ENST00000558911 SLC4A1APQ9BWU0 796 aaKnown RBP11.3□□□□□ -0.6
LRRC28-212ENST00000558911 RBM42Q9BTD8 480 aaKnown RBP11.25□□□□□ -0.61
LRRC28-212ENST00000558911 FOXD4L1Q9NU39 408 aa11.2□□□□□ -0.62
LRRC28-212ENST00000558911 ATF5Q9Y2D1 282 aaPredicted RBP11.18□□□□□ -0.62
LRRC28-212ENST00000558911 CHRDL2Q6WN34 429 aa11.09□□□□□ -0.63
LRRC28-212ENST00000558911 ZBTB22O15209 634 aa11□□□□□ -0.65
LRRC28-212ENST00000558911 ZBTB12Q9Y330 459 aaPredicted RBP11□□□□□ -0.65
LRRC28-212ENST00000558911 OSCARQ8IYS5 282 aa10.98□□□□□ -0.65
LRRC28-212ENST00000558911 AKT1S1Q96B36 256 aa10.96□□□□□ -0.65
LRRC28-212ENST00000558911 REM2Q8IYK8 340 aaPredicted RBP10.89□□□□□ -0.67
LRRC28-212ENST00000558911 PITPNM1O00562 1244 aa10.79□□□□□ -0.68
LRRC28-212ENST00000558911 PIP4P2Q8N4L2 257 aa10.79□□□□□ -0.68
LRRC28-212ENST00000558911 ATXN8OSP0DMR3 200 aa10.78□□□□□ -0.68
LRRC28-212ENST00000558911 FBLN2P98095 1184 aa10.75□□□□□ -0.69
LRRC28-212ENST00000558911 SP7Q8TDD2 431 aaPredicted RBP10.73□□□□□ -0.69
LRRC28-212ENST00000558911 HAX1O00165 279 aa10.71□□□□□ -0.69
LRRC28-212ENST00000558911 SPDYE2BA6NHP3 402 aa10.66□□□□□ -0.7
LRRC28-212ENST00000558911 SPDYE6P0CI01 402 aa10.66□□□□□ -0.7
LRRC28-212ENST00000558911 FXR2P51116 673 aaKnown RBP eCLIP10.66□□□□□ -0.7
LRRC28-212ENST00000558911 SPDYE2Q495Y8 402 aa10.66□□□□□ -0.7
LRRC28-212ENST00000558911 CLEC11AQ9Y240 323 aa10.65□□□□□ -0.7
LRRC28-212ENST00000558911 MKRN4PQ13434 485 aaPredicted RBP10.62□□□□□ -0.71
LRRC28-212ENST00000558911 ZNF692Q9BU19 519 aaPredicted RBP10.6□□□□□ -0.71
LRRC28-212ENST00000558911 PRKAR2AP13861 404 aaKnown RBP10.54□□□□□ -0.72
LRRC28-212ENST00000558911 SPDYE1Q8NFV5 336 aaPredicted RBP10.54□□□□□ -0.72
LRRC28-212ENST00000558911 EVX2Q03828 476 aa10.53□□□□□ -0.72
LRRC28-212ENST00000558911 SSUH2Q9Y2M2 353 aa10.47□□□□□ -0.73
LRRC28-212ENST00000558911 CHADLQ6NUI6 762 aa10.44□□□□□ -0.74
LRRC28-212ENST00000558911 PABPN1Q86U42 306 aaKnown RBP eCLIP10.43□□□□□ -0.74
LRRC28-212ENST00000558911 PRR29P0C7W0 189 aa10.39□□□□□ -0.75
LRRC28-212ENST00000558911 CSRNP3Q8WYN3 585 aa10.37□□□□□ -0.75
LRRC28-212ENST00000558911 C19orf67A6NJJ6 358 aa10.33□□□□□ -0.76
LRRC28-212ENST00000558911 EHMT2Q96KQ7 1210 aa10.29□□□□□ -0.76
LRRC28-212ENST00000558911 GABBR2O75899 941 aa10.26□□□□□ -0.77
LRRC28-212ENST00000558911 CD44P16070 742 aaKnown RBP10.2□□□□□ -0.78
LRRC28-212ENST00000558911 FARP1Q9Y4F1 1045 aaPredicted RBP10.18□□□□□ -0.78
LRRC28-212ENST00000558911 SPDYE4A6NLX3 237 aa10.09□□□□□ -0.79
LRRC28-212ENST00000558911 LHX8Q68G74 356 aa10.09□□□□□ -0.79
LRRC28-212ENST00000558911 ZRANB1Q9UGI0 708 aa10.06□□□□□ -0.8
LRRC28-212ENST00000558911 CREBZFQ9NS37 354 aa10.05□□□□□ -0.8
LRRC28-212ENST00000558911 STAG3Q9UJ98 1225 aa10.05□□□□□ -0.8
LRRC28-212ENST00000558911 POTEIP0CG38 1075 aa10.02□□□□□ -0.81
LRRC28-212ENST00000558911 DCBLD2Q96PD2 775 aa10.01□□□□□ -0.81
LRRC28-212ENST00000558911 ZNF579Q8NAF0 562 aaKnown RBP9.95□□□□□ -0.82
LRRC28-212ENST00000558911 PAK3O75914 559 aaPredicted RBP9.93□□□□□ -0.82
LRRC28-212ENST00000558911 CLCN6P51797 869 aa9.93□□□□□ -0.82
LRRC28-212ENST00000558911 GALR2O43603 387 aaPredicted RBP9.91□□□□□ -0.82
LRRC28-212ENST00000558911 PHF12Q96QT6 1004 aa9.9□□□□□ -0.82
LRRC28-212ENST00000558911 NPM1P06748 294 aaKnown RBP eCLIP9.88□□□□□ -0.83
LRRC28-212ENST00000558911 MNX1P50219 401 aaPredicted RBP9.81□□□□□ -0.84
LRRC28-212ENST00000558911 TSPYL2Q9H2G4 693 aaPredicted RBP9.79□□□□□ -0.84
LRRC28-212ENST00000558911 MS4A3Q96HJ5 214 aa9.74□□□□□ -0.85
LRRC28-212ENST00000558911 POTEB2H3BUK9 544 aa9.72□□□□□ -0.85
LRRC28-212ENST00000558911 PELP1Q8IZL8 1130 aaKnown RBP9.72□□□□□ -0.85
LRRC28-212ENST00000558911 MIER1Q8N108 512 aa9.69□□□□□ -0.86
LRRC28-212ENST00000558911 OTUD5Q96G74 571 aa9.69□□□□□ -0.86
LRRC28-212ENST00000558911 PROM2Q8N271 834 aa9.68□□□□□ -0.86
LRRC28-212ENST00000558911 PLEKHG5O94827 1062 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms