RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 LINGO3P0C6S8 592 aa15.63■□□□□ 0.09
SHMT2-226ENST00000556825 SKOR1P84550 965 aa15.63■□□□□ 0.09
SHMT2-226ENST00000556825 RPAP2Q8IXW5 612 aaPredicted RBP15.63■□□□□ 0.09
SHMT2-226ENST00000556825 GALNT15Q8N3T1 639 aa15.63■□□□□ 0.09
SHMT2-226ENST00000556825 SMARCC2Q8TAQ2 1214 aa15.63■□□□□ 0.09
SHMT2-226ENST00000556825 COG1Q8WTW3 980 aa15.63■□□□□ 0.09
SHMT2-226ENST00000556825 TSC22D3Q99576 134 aa15.63■□□□□ 0.09
SHMT2-226ENST00000556825 BPIFA3Q9BQP9 254 aa15.63■□□□□ 0.09
SHMT2-226ENST00000556825 TRIM4Q9C037 500 aa15.63■□□□□ 0.09
SHMT2-226ENST00000556825 NUB1Q9Y5A7 615 aa15.63■□□□□ 0.09
SHMT2-226ENST00000556825 KNDC1Q76NI1 1749 aa15.62■□□□□ 0.09
SHMT2-226ENST00000556825 A6NHS1 94 aa15.62■□□□□ 0.09
SHMT2-226ENST00000556825 NBPF7P0C2Y1 421 aaPredicted RBP15.62■□□□□ 0.09
SHMT2-226ENST00000556825 GNAT1P11488 350 aa15.62■□□□□ 0.09
SHMT2-226ENST00000556825 FERMT3Q86UX7 667 aa15.62■□□□□ 0.09
SHMT2-226ENST00000556825 MIPOL1Q8TD10 442 aa15.62■□□□□ 0.09
SHMT2-226ENST00000556825 ZC3H13Q5T200 1668 aaKnown RBP15.62■□□□□ 0.09
SHMT2-226ENST00000556825 B4DLN1 442 aa15.62■□□□□ 0.09
SHMT2-226ENST00000556825 AGPSO00116 658 aa15.62■□□□□ 0.09
SHMT2-226ENST00000556825 MGRN1O60291 552 aa15.62■□□□□ 0.09
SHMT2-226ENST00000556825 LARGE1O95461 756 aa15.62■□□□□ 0.09
SHMT2-226ENST00000556825 TMPOP42166 694 aaKnown RBP15.62■□□□□ 0.09
SHMT2-226ENST00000556825 CDC37L1Q7L3B6 337 aa15.62■□□□□ 0.09
SHMT2-226ENST00000556825 TMEM139Q8IV31 216 aa15.62■□□□□ 0.09
SHMT2-226ENST00000556825 SH2B1Q9NRF2 756 aaPredicted RBP15.62■□□□□ 0.09
SHMT2-226ENST00000556825 ADGRB3O60242 1522 aa15.61■□□□□ 0.09
SHMT2-226ENST00000556825 GOLGA6L10A6NI86 522 aa15.61■□□□□ 0.09
SHMT2-226ENST00000556825 SSBP05455 408 aaKnown RBP eCLIP15.61■□□□□ 0.09
SHMT2-226ENST00000556825 U2AF1L5P0DN76 240 aaPredicted RBP15.61■□□□□ 0.09
SHMT2-226ENST00000556825 MCM3P25205 808 aa15.61■□□□□ 0.09
SHMT2-226ENST00000556825 U2AF1Q01081 240 aaKnown RBP eCLIP15.61■□□□□ 0.09
SHMT2-226ENST00000556825 ME3Q16798 604 aa15.61■□□□□ 0.09
SHMT2-226ENST00000556825 DNAAF2Q9NVR5 837 aaKnown RBP15.61■□□□□ 0.09
SHMT2-226ENST00000556825 C15orf41Q9Y2V0 281 aa15.61■□□□□ 0.09
SHMT2-226ENST00000556825 RIPOR2Q9Y4F9 1068 aa15.61■□□□□ 0.09
SHMT2-226ENST00000556825 SIGLEC1Q9BZZ2 1709 aa15.61■□□□□ 0.09
SHMT2-226ENST00000556825 KDM5AP29375 1690 aaKnown RBP15.61■□□□□ 0.09
SHMT2-226ENST00000556825 KIF13AQ9H1H9 1805 aa15.61■□□□□ 0.09
SHMT2-226ENST00000556825 SETD1BQ9UPS6 1966 aaKnown RBP15.6■□□□□ 0.09
SHMT2-226ENST00000556825 GIGYF1O75420 1035 aaPredicted RBP15.6■□□□□ 0.09
SHMT2-226ENST00000556825 PDCP20941 246 aa15.6■□□□□ 0.09
SHMT2-226ENST00000556825 CDC37Q16543 378 aaPredicted RBP15.6■□□□□ 0.09
SHMT2-226ENST00000556825 CCAR1Q8IX12 1150 aaKnown RBP15.6■□□□□ 0.09
SHMT2-226ENST00000556825 DTNBP1Q96EV8 351 aa15.6■□□□□ 0.09
SHMT2-226ENST00000556825 NUP58Q9BVL2 599 aa15.6■□□□□ 0.09
SHMT2-226ENST00000556825 MIS18AQ9NYP9 233 aa15.6■□□□□ 0.09
SHMT2-226ENST00000556825 SNX14Q9Y5W7 946 aa15.6■□□□□ 0.09
SHMT2-226ENST00000556825 MAP3K5Q99683 1374 aa15.6■□□□□ 0.09
SHMT2-226ENST00000556825 CTAGE15A4D2H0 777 aa15.6■□□□□ 0.09
SHMT2-226ENST00000556825 CTAGE8P0CG41 777 aa15.6■□□□□ 0.09
SHMT2-226ENST00000556825 CTAGE6Q86UF2 777 aa15.6■□□□□ 0.09
SHMT2-226ENST00000556825 CTAGE4Q8IX94 777 aa15.6■□□□□ 0.09
SHMT2-226ENST00000556825 C17orf50Q8WW18 174 aa15.6■□□□□ 0.09
SHMT2-226ENST00000556825 TSPYL2Q9H2G4 693 aaPredicted RBP15.6■□□□□ 0.09
SHMT2-226ENST00000556825 HYPKQ9NX55 129 aa15.6■□□□□ 0.09
SHMT2-226ENST00000556825 ADCY9O60503 1353 aa15.6■□□□□ 0.09
SHMT2-226ENST00000556825 GOLGA8KD6RF30 607 aa15.59■□□□□ 0.09
SHMT2-226ENST00000556825 BUB1BO60566 1050 aaPredicted RBP15.59■□□□□ 0.09
SHMT2-226ENST00000556825 PFKFB2O60825 505 aa15.59■□□□□ 0.09
SHMT2-226ENST00000556825 MAGEA10P43363 369 aaPredicted RBP15.59■□□□□ 0.09
SHMT2-226ENST00000556825 PIP4K2BP78356 416 aa15.59■□□□□ 0.09
SHMT2-226ENST00000556825 DEUP1Q05D60 604 aa15.59■□□□□ 0.09
SHMT2-226ENST00000556825 CUL3Q13618 768 aa15.59■□□□□ 0.09
SHMT2-226ENST00000556825 BLMHQ13867 455 aa15.59■□□□□ 0.09
SHMT2-226ENST00000556825 KIAA0825Q8IV33 1275 aa15.59■□□□□ 0.09
SHMT2-226ENST00000556825 TRIM7Q9C029 511 aa15.59■□□□□ 0.09
SHMT2-226ENST00000556825 PPLO60437 1756 aa15.59■□□□□ 0.09
SHMT2-226ENST00000556825 MTHFSP49914 203 aa15.59■□□□□ 0.09
SHMT2-226ENST00000556825 SCNN1BP51168 640 aa15.59■□□□□ 0.09
SHMT2-226ENST00000556825 MYO1EQ12965 1108 aa15.59■□□□□ 0.09
SHMT2-226ENST00000556825 MYBPC2Q14324 1141 aa15.59■□□□□ 0.09
SHMT2-226ENST00000556825 CCDC57Q2TAC2 916 aa15.59■□□□□ 0.09
SHMT2-226ENST00000556825 NAA35Q5VZE5 725 aa15.59■□□□□ 0.09
SHMT2-226ENST00000556825 TAX1BP1Q86VP1 789 aa15.59■□□□□ 0.09
SHMT2-226ENST00000556825 CUL5Q93034 780 aa15.59■□□□□ 0.09
SHMT2-226ENST00000556825 AGAP3Q96P47 875 aa15.59■□□□□ 0.09
SHMT2-226ENST00000556825 HAUS2Q9NVX0 235 aa15.59■□□□□ 0.09
SHMT2-226ENST00000556825 A0A087WWV3 80 aa15.58■□□□□ 0.08
SHMT2-226ENST00000556825 APBB1O00213 710 aa15.58■□□□□ 0.08
SHMT2-226ENST00000556825 HMMRO75330 724 aa15.58■□□□□ 0.08
SHMT2-226ENST00000556825 WHAMMP3Q1A5X7 153 aa15.58■□□□□ 0.08
SHMT2-226ENST00000556825 C6orf89Q6UWU4 347 aa15.58■□□□□ 0.08
SHMT2-226ENST00000556825 CRELD2Q6UXH1 353 aaPredicted RBP15.58■□□□□ 0.08
SHMT2-226ENST00000556825 ERVK-7P63135 1459 aa15.58■□□□□ 0.08
SHMT2-226ENST00000556825 KIF4AO95239 1232 aa15.58■□□□□ 0.08
SHMT2-226ENST00000556825 ATP4AP20648 1035 aa15.58■□□□□ 0.08
SHMT2-226ENST00000556825 FANCCQ00597 558 aa15.58■□□□□ 0.08
SHMT2-226ENST00000556825 GNPTABQ3T906 1256 aa15.58■□□□□ 0.08
SHMT2-226ENST00000556825 STAMBPL1Q96FJ0 436 aa15.58■□□□□ 0.08
SHMT2-226ENST00000556825 API5Q9BZZ5 524 aaKnown RBP15.58■□□□□ 0.08
SHMT2-226ENST00000556825 NOD2Q9HC29 1040 aa15.58■□□□□ 0.08
SHMT2-226ENST00000556825 ATP10DQ9P241 1426 aa15.57■□□□□ 0.08
SHMT2-226ENST00000556825 STX10O60499 249 aa15.57■□□□□ 0.08
SHMT2-226ENST00000556825 ATP6V1G1O75348 118 aa15.57■□□□□ 0.08
SHMT2-226ENST00000556825 ATP6V1G2O95670 118 aa15.57■□□□□ 0.08
SHMT2-226ENST00000556825 ZNF24P17028 368 aa15.57■□□□□ 0.08
SHMT2-226ENST00000556825 IFT88Q13099 833 aa15.57■□□□□ 0.08
SHMT2-226ENST00000556825 XRCC4Q13426 336 aa15.57■□□□□ 0.08
SHMT2-226ENST00000556825 CCDC121Q6ZUS5 278 aa15.57■□□□□ 0.08
SHMT2-226ENST00000556825 ZNF473Q8WTR7 871 aaKnown RBP15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms