RNA–Protein interactions for RNA: ENST00000556220.5

ATXN3-236, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-236ENST00000556220 CDCA5Q96FF9 252 aa9.12□□□□□ -0.95
ATXN3-236ENST00000556220 OCSTAMPQ9BR26 566 aa9.12□□□□□ -0.95
ATXN3-236ENST00000556220 TRIOBPQ9H2D6 2365 aa9.11□□□□□ -0.95
ATXN3-236ENST00000556220 TM4SF4P48230 202 aa9.11□□□□□ -0.95
ATXN3-236ENST00000556220 TAF7Q15545 349 aaPredicted RBP9.11□□□□□ -0.95
ATXN3-236ENST00000556220 WASHC4Q2M389 1173 aa9.11□□□□□ -0.95
ATXN3-236ENST00000556220 INTS3Q68E01 1043 aaKnown RBP9.11□□□□□ -0.95
ATXN3-236ENST00000556220 UTP14AQ9BVJ6 771 aaKnown RBP9.11□□□□□ -0.95
ATXN3-236ENST00000556220 DNMT3LQ9UJW3 386 aa9.11□□□□□ -0.95
ATXN3-236ENST00000556220 RRP7AQ9Y3A4 280 aaKnown RBP9.11□□□□□ -0.95
ATXN3-236ENST00000556220 BRCA2P51587 3418 aa9.11□□□□□ -0.95
ATXN3-236ENST00000556220 CEP290O15078 2479 aa9.1□□□□□ -0.95
ATXN3-236ENST00000556220 FKTNO75072 461 aa9.1□□□□□ -0.95
ATXN3-236ENST00000556220 PPFIA3O75145 1194 aa9.1□□□□□ -0.95
ATXN3-236ENST00000556220 USP17L8P0C7I0 530 aa9.1□□□□□ -0.95
ATXN3-236ENST00000556220 LORP23490 312 aaPredicted RBP9.1□□□□□ -0.95
ATXN3-236ENST00000556220 PRKAR2BP31323 418 aa9.1□□□□□ -0.95
ATXN3-236ENST00000556220 RFC5P40937 340 aa9.1□□□□□ -0.95
ATXN3-236ENST00000556220 GRAPQ13588 217 aa9.1□□□□□ -0.95
ATXN3-236ENST00000556220 DCTN1Q14203 1278 aa9.1□□□□□ -0.95
ATXN3-236ENST00000556220 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.1□□□□□ -0.95
ATXN3-236ENST00000556220 KIF4BQ2VIQ3 1234 aa9.1□□□□□ -0.95
ATXN3-236ENST00000556220 DDX46Q7L014 1031 aaKnown RBP9.1□□□□□ -0.95
ATXN3-236ENST00000556220 GRAPLQ8TC17 118 aaPredicted RBP9.1□□□□□ -0.95
ATXN3-236ENST00000556220 ADAM32Q8TC27 787 aa9.1□□□□□ -0.95
ATXN3-236ENST00000556220 KCNQ5Q9NR82 932 aa9.1□□□□□ -0.95
ATXN3-236ENST00000556220 MIS18AQ9NYP9 233 aa9.1□□□□□ -0.95
ATXN3-236ENST00000556220 GGA3Q9NZ52 723 aa9.1□□□□□ -0.95
ATXN3-236ENST00000556220 AKAP11Q9UKA4 1901 aa9.09□□□□□ -0.95
ATXN3-236ENST00000556220 CENPFP49454 3210 aa9.09□□□□□ -0.95
ATXN3-236ENST00000556220 TTLL8A6PVC2 850 aa9.09□□□□□ -0.95
ATXN3-236ENST00000556220 HTATSF1O43719 755 aaKnown RBP9.09□□□□□ -0.95
ATXN3-236ENST00000556220 VIL1P09327 827 aaKnown RBP9.09□□□□□ -0.95
ATXN3-236ENST00000556220 MYL6BP14649 208 aa9.09□□□□□ -0.95
ATXN3-236ENST00000556220 CBLBQ13191 982 aa9.09□□□□□ -0.95
ATXN3-236ENST00000556220 NBPF20Q3BBV1 942 aa9.09□□□□□ -0.95
ATXN3-236ENST00000556220 INTS6LQ5JSJ4 861 aaKnown RBP9.09□□□□□ -0.95
ATXN3-236ENST00000556220 CC2D1BQ5T0F9 858 aaKnown RBP9.09□□□□□ -0.95
ATXN3-236ENST00000556220 TMC4Q7Z404 712 aa9.09□□□□□ -0.95
ATXN3-236ENST00000556220 EPS8L1Q8TE68 723 aa9.09□□□□□ -0.95
ATXN3-236ENST00000556220 CFHR5Q9BXR6 569 aa9.09□□□□□ -0.95
ATXN3-236ENST00000556220 DBNDD1Q9H9R9 158 aa9.09□□□□□ -0.95
ATXN3-236ENST00000556220 CUL9Q8IWT3 2517 aa9.09□□□□□ -0.95
ATXN3-236ENST00000556220 SIPA1L3O60292 1781 aaPredicted RBP9.09□□□□□ -0.95
ATXN3-236ENST00000556220 ASTN2O75129 1339 aaPredicted RBP9.08□□□□□ -0.96
ATXN3-236ENST00000556220 POLR2AP24928 1970 aaKnown RBP9.08□□□□□ -0.96
ATXN3-236ENST00000556220 UBE2Q2LH0YL09 131 aa9.08□□□□□ -0.96
ATXN3-236ENST00000556220 DLL1O00548 723 aa9.08□□□□□ -0.96
ATXN3-236ENST00000556220 SPINT1O43278 529 aa9.08□□□□□ -0.96
ATXN3-236ENST00000556220 HCLS1P14317 486 aaPredicted RBP9.08□□□□□ -0.96
ATXN3-236ENST00000556220 TMEM259Q4ZIN3 620 aa9.08□□□□□ -0.96
ATXN3-236ENST00000556220 MOB2Q70IA6 237 aa9.08□□□□□ -0.96
ATXN3-236ENST00000556220 PCMTD1Q96MG8 357 aaPredicted RBP9.08□□□□□ -0.96
ATXN3-236ENST00000556220 R3HDMLQ9H3Y0 253 aa9.08□□□□□ -0.96
ATXN3-236ENST00000556220 HMX1Q9NP08 348 aaPredicted RBP9.08□□□□□ -0.96
ATXN3-236ENST00000556220 HTTP42858 3142 aa9.07□□□□□ -0.96
ATXN3-236ENST00000556220 ECE2O60344 883 aa9.07□□□□□ -0.96
ATXN3-236ENST00000556220 ANGEL2Q5VTE6 544 aaKnown RBP9.07□□□□□ -0.96
ATXN3-236ENST00000556220 POLLQ9UGP5 575 aa9.07□□□□□ -0.96
ATXN3-236ENST00000556220 NSFL1CQ9UNZ2 370 aaKnown RBP9.07□□□□□ -0.96
ATXN3-236ENST00000556220 RTL9Q8NET4 1388 aa9.07□□□□□ -0.96
ATXN3-236ENST00000556220 EN2P19622 333 aaPredicted RBP9.06□□□□□ -0.96
ATXN3-236ENST00000556220 ZNF280AP59817 542 aaPredicted RBP9.06□□□□□ -0.96
ATXN3-236ENST00000556220 EIF4A1P60842 406 aaKnown RBP9.06□□□□□ -0.96
ATXN3-236ENST00000556220 SREBF2Q12772 1141 aa9.06□□□□□ -0.96
ATXN3-236ENST00000556220 OTOP1Q7RTM1 612 aa9.06□□□□□ -0.96
ATXN3-236ENST00000556220 PNISRQ8TF01 805 aaKnown RBP9.06□□□□□ -0.96
ATXN3-236ENST00000556220 EYA3Q99504 573 aa9.06□□□□□ -0.96
ATXN3-236ENST00000556220 TRIM17Q9Y577 477 aa9.06□□□□□ -0.96
ATXN3-236ENST00000556220 RANBP2P49792 3224 aaKnown RBP9.06□□□□□ -0.96
ATXN3-236ENST00000556220 COL3A1P02461 1466 aaPredicted RBP9.05□□□□□ -0.96
ATXN3-236ENST00000556220 GPSM2P81274 684 aa9.05□□□□□ -0.96
ATXN3-236ENST00000556220 LRP10Q7Z4F1 713 aa9.05□□□□□ -0.96
ATXN3-236ENST00000556220 NLRP10Q86W26 655 aa9.05□□□□□ -0.96
ATXN3-236ENST00000556220 AGBL3Q8NEM8 1001 aa9.05□□□□□ -0.96
ATXN3-236ENST00000556220 PITPNM2Q9BZ72 1349 aa9.05□□□□□ -0.96
ATXN3-236ENST00000556220 U2AF1L5P0DN76 240 aaPredicted RBP9.04□□□□□ -0.96
ATXN3-236ENST00000556220 U2AF1Q01081 240 aaKnown RBP eCLIP9.04□□□□□ -0.96
ATXN3-236ENST00000556220 PTSQ03393 145 aa9.04□□□□□ -0.96
ATXN3-236ENST00000556220 HSP90AB3PQ58FF7 597 aa9.04□□□□□ -0.96
ATXN3-236ENST00000556220 PRAMEF18Q5VWM3 479 aa9.04□□□□□ -0.96
ATXN3-236ENST00000556220 SLC17A8Q8NDX2 589 aa9.04□□□□□ -0.96
ATXN3-236ENST00000556220 TBC1D16Q8TBP0 767 aa9.04□□□□□ -0.96
ATXN3-236ENST00000556220 ARMC5Q96C12 935 aa9.04□□□□□ -0.96
ATXN3-236ENST00000556220 ZC3H12CQ9C0D7 883 aaKnown RBP9.04□□□□□ -0.96
ATXN3-236ENST00000556220 TRMT112Q9UI30 125 aaKnown RBP9.04□□□□□ -0.96
ATXN3-236ENST00000556220 NUDCQ9Y266 331 aa9.04□□□□□ -0.96
ATXN3-236ENST00000556220 SH3TC1Q8TE82 1336 aa9.04□□□□□ -0.96
ATXN3-236ENST00000556220 FIGNL2A6NMB9 653 aa9.03□□□□□ -0.96
ATXN3-236ENST00000556220 CELF1Q92879 486 aaKnown RBP9.03□□□□□ -0.96
ATXN3-236ENST00000556220 GMLQ99445 158 aa9.03□□□□□ -0.96
ATXN3-236ENST00000556220 THUMPD2Q9BTF0 503 aaKnown RBP9.03□□□□□ -0.96
ATXN3-236ENST00000556220 TRIM34Q9BYJ4 488 aa9.03□□□□□ -0.96
ATXN3-236ENST00000556220 MYOZ2Q9NPC6 264 aa9.03□□□□□ -0.96
ATXN3-236ENST00000556220 SCAF8Q9UPN6 1271 aaKnown RBP9.03□□□□□ -0.96
ATXN3-236ENST00000556220 PTPN22Q9Y2R2 807 aa9.03□□□□□ -0.96
ATXN3-236ENST00000556220 NUP98P52948 1817 aa9.03□□□□□ -0.96
ATXN3-236ENST00000556220 NF2P35240 595 aa9.02□□□□□ -0.97
ATXN3-236ENST00000556220 INHBEP58166 350 aa9.02□□□□□ -0.97
ATXN3-236ENST00000556220 PTPN12Q05209 780 aaKnown RBP9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms