RNA–Protein interactions for RNA: ENST00000555890.5

SLIRP-204, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 471 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-204ENST00000555890 PNMA3Q9UL41 463 aa8.36□□□□□ -1.07
SLIRP-204ENST00000555890 IBTKQ9P2D0 1353 aaPredicted RBP8.35□□□□□ -1.07
SLIRP-204ENST00000555890 HOXA2O43364 376 aa8.35□□□□□ -1.07
SLIRP-204ENST00000555890 RAB11FIP3O75154 756 aa8.35□□□□□ -1.07
SLIRP-204ENST00000555890 ZPR1O75312 459 aa8.35□□□□□ -1.07
SLIRP-204ENST00000555890 GCGRP47871 477 aa8.35□□□□□ -1.07
SLIRP-204ENST00000555890 SLC9C1Q4G0N8 1177 aa8.35□□□□□ -1.07
SLIRP-204ENST00000555890 HSP90AB4PQ58FF6 505 aa8.35□□□□□ -1.07
SLIRP-204ENST00000555890 BMP2KLQ5H9B9 411 aa8.35□□□□□ -1.07
SLIRP-204ENST00000555890 CDC37L1Q7L3B6 337 aa8.35□□□□□ -1.07
SLIRP-204ENST00000555890 COPS6Q7L5N1 327 aa8.35□□□□□ -1.07
SLIRP-204ENST00000555890 LURAP1LQ8IV03 231 aa8.35□□□□□ -1.07
SLIRP-204ENST00000555890 DNAJC10Q8IXB1 793 aa8.35□□□□□ -1.07
SLIRP-204ENST00000555890 KHSRPQ92945 711 aaKnown RBP eCLIP8.35□□□□□ -1.07
SLIRP-204ENST00000555890 ZNF622Q969S3 477 aaKnown RBP eCLIP8.35□□□□□ -1.07
SLIRP-204ENST00000555890 FBXL18Q96ME1 805 aa8.35□□□□□ -1.07
SLIRP-204ENST00000555890 CNTNAP3BQ96NU0 1288 aa8.35□□□□□ -1.07
SLIRP-204ENST00000555890 METTL22Q9BUU2 404 aaPredicted RBP8.35□□□□□ -1.07
SLIRP-204ENST00000555890 BRIP1Q9BX63 1249 aa8.35□□□□□ -1.07
SLIRP-204ENST00000555890 CFHR5Q9BXR6 569 aa8.35□□□□□ -1.07
SLIRP-204ENST00000555890 CNTNAP3Q9BZ76 1288 aa8.35□□□□□ -1.07
SLIRP-204ENST00000555890 SEMA6BQ9H3T3 888 aa8.35□□□□□ -1.07
SLIRP-204ENST00000555890 ALG2Q9H553 416 aa8.35□□□□□ -1.07
SLIRP-204ENST00000555890 C11orf16Q9NQ32 467 aa8.35□□□□□ -1.07
SLIRP-204ENST00000555890 USP34Q70CQ2 3546 aa8.35□□□□□ -1.07
SLIRP-204ENST00000555890 FAM86C2PA6NEL3 165 aa8.34□□□□□ -1.07
SLIRP-204ENST00000555890 TRIM6-TRIM34B2RNG4 842 aa8.34□□□□□ -1.07
SLIRP-204ENST00000555890 C3orf80F5H4A9 247 aa8.34□□□□□ -1.07
SLIRP-204ENST00000555890 FZD9O00144 591 aa8.34□□□□□ -1.07
SLIRP-204ENST00000555890 GRM8O00222 908 aa8.34□□□□□ -1.07
SLIRP-204ENST00000555890 CYP19A1P11511 503 aaPredicted RBP8.34□□□□□ -1.07
SLIRP-204ENST00000555890 PTPREP23469 700 aa8.34□□□□□ -1.07
SLIRP-204ENST00000555890 RBM25P49756 843 aaKnown RBP8.34□□□□□ -1.07
SLIRP-204ENST00000555890 CTDSPL2Q05D32 466 aa8.34□□□□□ -1.07
SLIRP-204ENST00000555890 PPP1R42Q7Z4L9 355 aa8.34□□□□□ -1.07
SLIRP-204ENST00000555890 UBE2Q1Q7Z7E8 422 aa8.34□□□□□ -1.07
SLIRP-204ENST00000555890 SLC51AQ86UW1 340 aa8.34□□□□□ -1.07
SLIRP-204ENST00000555890 PLEKHM2Q8IWE5 1019 aa8.34□□□□□ -1.07
SLIRP-204ENST00000555890 HELBQ8NG08 1087 aaPredicted RBP8.34□□□□□ -1.07
SLIRP-204ENST00000555890 PLBD2Q8NHP8 589 aa8.34□□□□□ -1.07
SLIRP-204ENST00000555890 SSH3Q8TE77 659 aa8.34□□□□□ -1.07
SLIRP-204ENST00000555890 TRIM34Q9BYJ4 488 aa8.34□□□□□ -1.07
SLIRP-204ENST00000555890 LRRCC1Q9C099 1032 aa8.34□□□□□ -1.07
SLIRP-204ENST00000555890 GBA2Q9HCG7 927 aaPredicted RBP8.34□□□□□ -1.07
SLIRP-204ENST00000555890 HMX1Q9NP08 348 aaPredicted RBP8.34□□□□□ -1.07
SLIRP-204ENST00000555890 ASH1LQ9NR48 2969 aaKnown RBP8.34□□□□□ -1.07
SLIRP-204ENST00000555890 ARFGEF2Q9Y6D5 1785 aa8.34□□□□□ -1.07
SLIRP-204ENST00000555890 PNMA6EA0A0J9YXQ4 647 aa8.33□□□□□ -1.08
SLIRP-204ENST00000555890 PALM3A6NDB9 673 aaPredicted RBP8.33□□□□□ -1.08
SLIRP-204ENST00000555890 SRGAP3O43295 1099 aa8.33□□□□□ -1.08
SLIRP-204ENST00000555890 STARD3NLO95772 234 aa8.33□□□□□ -1.08
SLIRP-204ENST00000555890 MYCP01106 439 aaPredicted RBP8.33□□□□□ -1.08
SLIRP-204ENST00000555890 NBPF7P0C2Y1 421 aaPredicted RBP8.33□□□□□ -1.08
SLIRP-204ENST00000555890 SOX11P35716 441 aa8.33□□□□□ -1.08
SLIRP-204ENST00000555890 VAC14Q08AM6 782 aa8.33□□□□□ -1.08
SLIRP-204ENST00000555890 SOGA3Q5TF21 947 aa8.33□□□□□ -1.08
SLIRP-204ENST00000555890 PRR5LQ6MZQ0 368 aa8.33□□□□□ -1.08
SLIRP-204ENST00000555890 NKX2-3Q8TAU0 364 aa8.33□□□□□ -1.08
SLIRP-204ENST00000555890 IRX2Q9BZI1 471 aaPredicted RBP8.33□□□□□ -1.08
SLIRP-204ENST00000555890 UBE2OQ9C0C9 1292 aaKnown RBP8.33□□□□□ -1.08
SLIRP-204ENST00000555890 GJA3Q9Y6H8 435 aa8.33□□□□□ -1.08
SLIRP-204ENST00000555890 UTYO14607 1347 aa8.32□□□□□ -1.08
SLIRP-204ENST00000555890 SURF6O75683 361 aaKnown RBP8.32□□□□□ -1.08
SLIRP-204ENST00000555890 SRGNP10124 158 aa8.32□□□□□ -1.08
SLIRP-204ENST00000555890 MTX1Q13505 466 aa8.32□□□□□ -1.08
SLIRP-204ENST00000555890 MTMR2Q13614 643 aa8.32□□□□□ -1.08
SLIRP-204ENST00000555890 CWF19L2Q2TBE0 894 aaKnown RBP8.32□□□□□ -1.08
SLIRP-204ENST00000555890 TBC1D9BQ66K14 1250 aa8.32□□□□□ -1.08
SLIRP-204ENST00000555890 STYK1Q6J9G0 422 aa8.32□□□□□ -1.08
SLIRP-204ENST00000555890 PRPF40BQ6NWY9 871 aaKnown RBP8.32□□□□□ -1.08
SLIRP-204ENST00000555890 CASC1Q6TDU7 716 aa8.32□□□□□ -1.08
SLIRP-204ENST00000555890 OLFM4Q6UX06 510 aa8.32□□□□□ -1.08
SLIRP-204ENST00000555890 ERC1Q8IUD2 1116 aa8.32□□□□□ -1.08
SLIRP-204ENST00000555890 USP38Q8NB14 1042 aa8.32□□□□□ -1.08
SLIRP-204ENST00000555890 SHISA4Q96DD7 197 aa8.32□□□□□ -1.08
SLIRP-204ENST00000555890 ERO1AQ96HE7 468 aa8.32□□□□□ -1.08
SLIRP-204ENST00000555890 MYD88Q99836 296 aa8.32□□□□□ -1.08
SLIRP-204ENST00000555890 EFCC1Q9HA90 598 aa8.32□□□□□ -1.08
SLIRP-204ENST00000555890 ZNF277Q9NRM2 450 aaPredicted RBP8.32□□□□□ -1.08
SLIRP-204ENST00000555890 THEGQ9P2T0 379 aa8.32□□□□□ -1.08
SLIRP-204ENST00000555890 PGAP2Q9UHJ9 254 aa8.32□□□□□ -1.08
SLIRP-204ENST00000555890 EXOC6BQ9Y2D4 811 aa8.32□□□□□ -1.08
SLIRP-204ENST00000555890 ZBTB1Q9Y2K1 713 aa8.32□□□□□ -1.08
SLIRP-204ENST00000555890 NOP58Q9Y2X3 529 aaKnown RBP8.32□□□□□ -1.08
SLIRP-204ENST00000555890 COL4A5P29400 1685 aa8.32□□□□□ -1.08
SLIRP-204ENST00000555890 NAV2Q8IVL1 2488 aa8.32□□□□□ -1.08
SLIRP-204ENST00000555890 TPRP12270 2363 aaKnown RBP8.32□□□□□ -1.08
SLIRP-204ENST00000555890 SNED1Q8TER0 1413 aa8.31□□□□□ -1.08
SLIRP-204ENST00000555890 NEURL1BA8MQ27 555 aa8.31□□□□□ -1.08
SLIRP-204ENST00000555890 PRR33A8MZF0 331 aa8.31□□□□□ -1.08
SLIRP-204ENST00000555890 SMARCA5O60264 1052 aaPredicted RBP8.31□□□□□ -1.08
SLIRP-204ENST00000555890 CDC45O75419 566 aa8.31□□□□□ -1.08
SLIRP-204ENST00000555890 A1BGP04217 495 aa8.31□□□□□ -1.08
SLIRP-204ENST00000555890 IGKV5-2P06315 115 aa8.31□□□□□ -1.08
SLIRP-204ENST00000555890 TM4SF4P48230 202 aa8.31□□□□□ -1.08
SLIRP-204ENST00000555890 SCNN1DP51172 638 aa8.31□□□□□ -1.08
SLIRP-204ENST00000555890 OS9Q13438 667 aaPredicted RBP8.31□□□□□ -1.08
SLIRP-204ENST00000555890 GCKRQ14397 625 aa8.31□□□□□ -1.08
SLIRP-204ENST00000555890 TTC22Q5TAA0 569 aa8.31□□□□□ -1.08
SLIRP-204ENST00000555890 NBPF10Q6P3W6 841 aaKnown RBP8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms