RNA–Protein interactions for RNA: ENST00000555402.1

VRK1-205, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 415 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-205ENST00000555402 FAM53CQ9NYF3 392 aa9.32□□□□□ -0.92
VRK1-205ENST00000555402 IVNS1ABPQ9Y6Y0 642 aa9.32□□□□□ -0.92
VRK1-205ENST00000555402 ZSWIM9Q86XI8 627 aa9.31□□□□□ -0.92
VRK1-205ENST00000555402 CCER1Q8TC90 406 aaPredicted RBP9.31□□□□□ -0.92
VRK1-205ENST00000555402 DUSP23Q9BVJ7 150 aa9.31□□□□□ -0.92
VRK1-205ENST00000555402 ZNF503-AS2A6NEH8 195 aa9.3□□□□□ -0.92
VRK1-205ENST00000555402 ZNF862O60290 1169 aa9.3□□□□□ -0.92
VRK1-205ENST00000555402 ZNF865P0CJ78 1059 aaPredicted RBP9.3□□□□□ -0.92
VRK1-205ENST00000555402 PTPN12Q05209 780 aaKnown RBP9.3□□□□□ -0.92
VRK1-205ENST00000555402 ZC3H12CQ9C0D7 883 aaKnown RBP9.3□□□□□ -0.92
VRK1-205ENST00000555402 PCOLCE2Q9UKZ9 415 aa9.3□□□□□ -0.92
VRK1-205ENST00000555402 RNGTTO60942 597 aaKnown RBP9.29□□□□□ -0.92
VRK1-205ENST00000555402 CFPP27918 469 aa9.29□□□□□ -0.92
VRK1-205ENST00000555402 RAP1GAPP47736 663 aa9.29□□□□□ -0.92
VRK1-205ENST00000555402 TTLL4Q14679 1199 aa9.29□□□□□ -0.92
VRK1-205ENST00000555402 MLANAQ16655 118 aa9.29□□□□□ -0.92
VRK1-205ENST00000555402 TOX2Q96NM4 488 aa9.29□□□□□ -0.92
VRK1-205ENST00000555402 PRDM7Q9NQW5 492 aa9.29□□□□□ -0.92
VRK1-205ENST00000555402 MTMR7Q9Y216 660 aa9.29□□□□□ -0.92
VRK1-205ENST00000555402 PCDHGC5Q9Y5F6 944 aa9.29□□□□□ -0.92
VRK1-205ENST00000555402 KCNMB1Q16558 191 aa9.28□□□□□ -0.92
VRK1-205ENST00000555402 KRTAP4-5Q9BYR2 181 aa9.28□□□□□ -0.92
VRK1-205ENST00000555402 TNKS2Q9H2K2 1166 aa9.28□□□□□ -0.92
VRK1-205ENST00000555402 SNX11Q9Y5W9 270 aa9.28□□□□□ -0.92
VRK1-205ENST00000555402 NEFLP07196 543 aa9.27□□□□□ -0.93
VRK1-205ENST00000555402 HCLS1P14317 486 aaPredicted RBP9.27□□□□□ -0.93
VRK1-205ENST00000555402 KIF4BQ2VIQ3 1234 aa9.27□□□□□ -0.93
VRK1-205ENST00000555402 ANO2Q9NQ90 1003 aa9.27□□□□□ -0.93
VRK1-205ENST00000555402 ABL1P00519 1130 aa9.26□□□□□ -0.93
VRK1-205ENST00000555402 ZNF157P51786 506 aaPredicted RBP9.26□□□□□ -0.93
VRK1-205ENST00000555402 MFAP1P55081 439 aaKnown RBP9.26□□□□□ -0.93
VRK1-205ENST00000555402 RPS26P11Q5JNZ5 115 aaPredicted RBP9.26□□□□□ -0.93
VRK1-205ENST00000555402 ABCB6Q9NP58 842 aa9.26□□□□□ -0.93
VRK1-205ENST00000555402 ITIH2P19823 946 aa9.25□□□□□ -0.93
VRK1-205ENST00000555402 NPM2Q86SE8 214 aaKnown RBP9.25□□□□□ -0.93
VRK1-205ENST00000555402 NPHS2Q9NP85 383 aa9.25□□□□□ -0.93
VRK1-205ENST00000555402 KRT82Q9NSB4 513 aa9.25□□□□□ -0.93
VRK1-205ENST00000555402 GSTP1P09211 210 aaKnown RBP9.24□□□□□ -0.93
VRK1-205ENST00000555402 FAAP100Q0VG06 881 aa9.24□□□□□ -0.93
VRK1-205ENST00000555402 C1QL4Q86Z23 238 aa9.24□□□□□ -0.93
VRK1-205ENST00000555402 TOP6BLQ8N6T0 577 aa9.24□□□□□ -0.93
VRK1-205ENST00000555402 ZSCAN18Q8TBC5 510 aaPredicted RBP9.24□□□□□ -0.93
VRK1-205ENST00000555402 HEXIM2Q96MH2 286 aaKnown RBP9.24□□□□□ -0.93
VRK1-205ENST00000555402 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.23□□□□□ -0.93
VRK1-205ENST00000555402 TSPAN15O95858 294 aa9.23□□□□□ -0.93
VRK1-205ENST00000555402 RANGAP1P46060 587 aaPredicted RBP9.23□□□□□ -0.93
VRK1-205ENST00000555402 ZP2Q05996 745 aa9.23□□□□□ -0.93
VRK1-205ENST00000555402 ZNF211Q13398 564 aaPredicted RBP9.23□□□□□ -0.93
VRK1-205ENST00000555402 PHLDB3Q6NSJ2 640 aa9.23□□□□□ -0.93
VRK1-205ENST00000555402 PRPF40BQ6NWY9 871 aaKnown RBP9.23□□□□□ -0.93
VRK1-205ENST00000555402 LILRA6Q6PI73 481 aa9.23□□□□□ -0.93
VRK1-205ENST00000555402 ASB11Q8WXH4 323 aa9.23□□□□□ -0.93
VRK1-205ENST00000555402 LIN37Q96GY3 246 aaPredicted RBP9.23□□□□□ -0.93
VRK1-205ENST00000555402 PPP1R16BQ96T49 567 aa9.23□□□□□ -0.93
VRK1-205ENST00000555402 SSU72Q9NP77 194 aaKnown RBP9.23□□□□□ -0.93
VRK1-205ENST00000555402 CTNND2Q9UQB3 1225 aa9.23□□□□□ -0.93
VRK1-205ENST00000555402 TMEM238LA0A1B0GVL6 79 aa9.22□□□□□ -0.93
VRK1-205ENST00000555402 CPNE3O75131 537 aaKnown RBP9.22□□□□□ -0.93
VRK1-205ENST00000555402 NEFMP07197 916 aa9.22□□□□□ -0.93
VRK1-205ENST00000555402 HNRNPUQ00839 825 aaKnown RBP eCLIP9.22□□□□□ -0.93
VRK1-205ENST00000555402 IKZF1Q13422 519 aa9.22□□□□□ -0.93
VRK1-205ENST00000555402 LCNL1Q6ZST4 164 aa9.22□□□□□ -0.93
VRK1-205ENST00000555402 FAM214BQ7L5A3 538 aa9.22□□□□□ -0.93
VRK1-205ENST00000555402 GNEQ9Y223 722 aaKnown RBP9.22□□□□□ -0.93
VRK1-205ENST00000555402 ORC1Q13415 861 aa9.21□□□□□ -0.94
VRK1-205ENST00000555402 LCE5AQ5TCM9 118 aa9.21□□□□□ -0.94
VRK1-205ENST00000555402 SND1Q7KZF4 910 aaKnown RBP eCLIP9.21□□□□□ -0.94
VRK1-205ENST00000555402 SIAH1Q8IUQ4 282 aa9.21□□□□□ -0.94
VRK1-205ENST00000555402 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.21□□□□□ -0.94
VRK1-205ENST00000555402 LRRC56Q8IYG6 542 aaPredicted RBP9.21□□□□□ -0.94
VRK1-205ENST00000555402 ISL2Q96A47 359 aa9.21□□□□□ -0.94
VRK1-205ENST00000555402 BRPF3Q9ULD4 1205 aa9.21□□□□□ -0.94
VRK1-205ENST00000555402 AFMP43652 599 aa9.2□□□□□ -0.94
VRK1-205ENST00000555402 FYB2Q5VWT5 728 aa9.2□□□□□ -0.94
VRK1-205ENST00000555402 ANKLE2Q86XL3 938 aa9.2□□□□□ -0.94
VRK1-205ENST00000555402 CCDC27Q2M243 656 aa9.19□□□□□ -0.94
VRK1-205ENST00000555402 SYDE1Q6ZW31 735 aaPredicted RBP9.19□□□□□ -0.94
VRK1-205ENST00000555402 TXNDC2Q86VQ3 553 aa9.19□□□□□ -0.94
VRK1-205ENST00000555402 KCNB2Q92953 911 aa9.19□□□□□ -0.94
VRK1-205ENST00000555402 GTF2IRD1Q9UHL9 959 aa9.19□□□□□ -0.94
VRK1-205ENST00000555402 IGF2BP3O00425 579 aaKnown RBP eCLIP9.18□□□□□ -0.94
VRK1-205ENST00000555402 ZSCAN22P10073 491 aaPredicted RBP9.18□□□□□ -0.94
VRK1-205ENST00000555402 PRR23BQ6ZRT6 265 aa9.18□□□□□ -0.94
VRK1-205ENST00000555402 PDZD3Q86UT5 571 aa9.18□□□□□ -0.94
VRK1-205ENST00000555402 SPACA3Q8IXA5 215 aa9.18□□□□□ -0.94
VRK1-205ENST00000555402 RNF214Q8ND24 703 aa9.18□□□□□ -0.94
VRK1-205ENST00000555402 GADD45BO75293 160 aaPredicted RBP9.17□□□□□ -0.94
VRK1-205ENST00000555402 GLI1P08151 1106 aa9.17□□□□□ -0.94
VRK1-205ENST00000555402 ZC3H12AQ5D1E8 599 aaKnown RBP9.17□□□□□ -0.94
VRK1-205ENST00000555402 CCDC74AQ96AQ1 378 aa9.17□□□□□ -0.94
VRK1-205ENST00000555402 TRAK1Q9UPV9 953 aa9.17□□□□□ -0.94
VRK1-205ENST00000555402 NCANO14594 1321 aa9.16□□□□□ -0.94
VRK1-205ENST00000555402 PRRG2O14669 202 aa9.16□□□□□ -0.94
VRK1-205ENST00000555402 RGS22Q8NE09 1264 aa9.16□□□□□ -0.94
VRK1-205ENST00000555402 ICMTO60725 284 aa9.15□□□□□ -0.94
VRK1-205ENST00000555402 C1QTNF9P0C862 333 aa9.15□□□□□ -0.94
VRK1-205ENST00000555402 SERPINB4P48594 390 aa9.15□□□□□ -0.94
VRK1-205ENST00000555402 ERVK-24P63145 666 aa9.15□□□□□ -0.94
VRK1-205ENST00000555402 PPP2R3AQ06190 1150 aa9.15□□□□□ -0.94
VRK1-205ENST00000555402 ECM1Q16610 540 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms