RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 TTLL12Q14166 644 aaPredicted RBP13.08□□□□□ -0.32
SHMT2-218ENST00000555213 LCORLQ8N3X6 602 aa13.08□□□□□ -0.32
SHMT2-218ENST00000555213 OSBPL5Q9H0X9 879 aaPredicted RBP13.08□□□□□ -0.32
SHMT2-218ENST00000555213 IL25Q9H293 177 aa13.08□□□□□ -0.32
SHMT2-218ENST00000555213 ARMT1Q9H993 441 aa13.08□□□□□ -0.32
SHMT2-218ENST00000555213 FAM198AQ9UFP1 575 aa13.08□□□□□ -0.32
SHMT2-218ENST00000555213 FLT1P17948 1338 aa13.08□□□□□ -0.32
SHMT2-218ENST00000555213 TMEM88BA6NKF7 163 aa13.07□□□□□ -0.32
SHMT2-218ENST00000555213 PPP1R12BO60237 982 aaPredicted RBP13.07□□□□□ -0.32
SHMT2-218ENST00000555213 MFAP1P55081 439 aaKnown RBP13.07□□□□□ -0.32
SHMT2-218ENST00000555213 ZMYM1Q5SVZ6 1142 aa13.07□□□□□ -0.32
SHMT2-218ENST00000555213 DCAF15Q66K64 600 aa13.07□□□□□ -0.32
SHMT2-218ENST00000555213 MAPKAPK5Q8IW41 473 aa13.07□□□□□ -0.32
SHMT2-218ENST00000555213 AMOTL1Q8IY63 956 aa13.07□□□□□ -0.32
SHMT2-218ENST00000555213 DNAJC5GQ8N7S2 189 aa13.07□□□□□ -0.32
SHMT2-218ENST00000555213 C2orf69Q8N8R5 385 aa13.07□□□□□ -0.32
SHMT2-218ENST00000555213 TGFBRAP1Q8WUH2 860 aa13.07□□□□□ -0.32
SHMT2-218ENST00000555213 PUS7LQ9H0K6 701 aaKnown RBP13.07□□□□□ -0.32
SHMT2-218ENST00000555213 DHX36Q9H2U1 1008 aaKnown RBP13.07□□□□□ -0.32
SHMT2-218ENST00000555213 GBA2Q9HCG7 927 aaPredicted RBP13.07□□□□□ -0.32
SHMT2-218ENST00000555213 HELLSQ9NRZ9 838 aa13.07□□□□□ -0.32
SHMT2-218ENST00000555213 ATRNL1Q5VV63 1379 aa13.07□□□□□ -0.32
SHMT2-218ENST00000555213 GPAA1O43292 621 aa13.06□□□□□ -0.32
SHMT2-218ENST00000555213 HLA-DOAP06340 250 aa13.06□□□□□ -0.32
SHMT2-218ENST00000555213 SLFNL1Q499Z3 407 aa13.06□□□□□ -0.32
SHMT2-218ENST00000555213 PRAMEF18Q5VWM3 479 aa13.06□□□□□ -0.32
SHMT2-218ENST00000555213 ARMC9Q7Z3E5 817 aa13.06□□□□□ -0.32
SHMT2-218ENST00000555213 OSBP2Q969R2 916 aa13.06□□□□□ -0.32
SHMT2-218ENST00000555213 CSRNP1Q96S65 589 aa13.06□□□□□ -0.32
SHMT2-218ENST00000555213 TRIM34Q9BYJ4 488 aa13.06□□□□□ -0.32
SHMT2-218ENST00000555213 NACAP1Q9BZK3 213 aa13.06□□□□□ -0.32
SHMT2-218ENST00000555213 DDX4Q9NQI0 724 aaKnown RBP13.06□□□□□ -0.32
SHMT2-218ENST00000555213 CREBZFQ9NS37 354 aa13.06□□□□□ -0.32
SHMT2-218ENST00000555213 ABT1Q9ULW3 272 aaKnown RBP13.06□□□□□ -0.32
SHMT2-218ENST00000555213 SLC4A4Q9Y6R1 1079 aa13.06□□□□□ -0.32
SHMT2-218ENST00000555213 PAPPA2Q9BXP8 1791 aa13.06□□□□□ -0.32
SHMT2-218ENST00000555213 M0R2C6 588 aa13.05□□□□□ -0.32
SHMT2-218ENST00000555213 CHGBP05060 677 aa13.05□□□□□ -0.32
SHMT2-218ENST00000555213 IREB2P48200 963 aaKnown RBP13.05□□□□□ -0.32
SHMT2-218ENST00000555213 NMIQ13287 307 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-218ENST00000555213 MCMDC2Q4G0Z9 681 aa13.05□□□□□ -0.32
SHMT2-218ENST00000555213 NBPF12Q5TAG4 269 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-218ENST00000555213 CASC1Q6TDU7 716 aa13.05□□□□□ -0.32
SHMT2-218ENST00000555213 RUFY2Q8WXA3 655 aa13.05□□□□□ -0.32
SHMT2-218ENST00000555213 TEPSINQ96N21 525 aa13.05□□□□□ -0.32
SHMT2-218ENST00000555213 ESYT1Q9BSJ8 1104 aa13.05□□□□□ -0.32
SHMT2-218ENST00000555213 USP26Q9BXU7 913 aa13.05□□□□□ -0.32
SHMT2-218ENST00000555213 ATP8A2Q9NTI2 1148 aa13.05□□□□□ -0.32
SHMT2-218ENST00000555213 SSC5DA1L4H1 1573 aa13.04□□□□□ -0.32
SHMT2-218ENST00000555213 AK9Q5TCS8 1911 aa13.04□□□□□ -0.32
SHMT2-218ENST00000555213 APPP05067 770 aa13.04□□□□□ -0.32
SHMT2-218ENST00000555213 FMR1Q06787 632 aaKnown RBP eCLIP13.04□□□□□ -0.32
SHMT2-218ENST00000555213 CWC27Q6UX04 472 aaKnown RBP13.04□□□□□ -0.32
SHMT2-218ENST00000555213 DLK2Q6UY11 383 aa13.04□□□□□ -0.32
SHMT2-218ENST00000555213 TTC6Q86TZ1 520 aa13.04□□□□□ -0.32
SHMT2-218ENST00000555213 SDR42E1Q8WUS8 393 aa13.04□□□□□ -0.32
SHMT2-218ENST00000555213 TBC1D32Q96NH3 1257 aa13.04□□□□□ -0.32
SHMT2-218ENST00000555213 STRBPQ96SI9 672 aaKnown RBP13.04□□□□□ -0.32
SHMT2-218ENST00000555213 MCM9Q9NXL9 1143 aa13.04□□□□□ -0.32
SHMT2-218ENST00000555213 SAP30BPQ9UHR5 308 aaKnown RBP13.04□□□□□ -0.32
SHMT2-218ENST00000555213 RAD50Q92878 1312 aa13.04□□□□□ -0.32
SHMT2-218ENST00000555213 TRPM7Q96QT4 1865 aa13.04□□□□□ -0.32
SHMT2-218ENST00000555213 A0A0D9SFI3 127 aa13.03□□□□□ -0.32
SHMT2-218ENST00000555213 POLR3DP05423 398 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-218ENST00000555213 TDO2P48775 406 aa13.03□□□□□ -0.32
SHMT2-218ENST00000555213 PRKG1Q13976 671 aa13.03□□□□□ -0.32
SHMT2-218ENST00000555213 COL13A1Q5TAT6 717 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-218ENST00000555213 CST9Q5W186 159 aa13.03□□□□□ -0.32
SHMT2-218ENST00000555213 GIMAP6Q6P9H5 292 aa13.03□□□□□ -0.32
SHMT2-218ENST00000555213 CDAN1Q8IWY9 1227 aa13.03□□□□□ -0.32
SHMT2-218ENST00000555213 ZFPM1Q8IX07 1006 aa13.03□□□□□ -0.32
SHMT2-218ENST00000555213 CRACR2BQ8N4Y2 399 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-218ENST00000555213 FAM227BQ96M60 508 aa13.03□□□□□ -0.32
SHMT2-218ENST00000555213 KIF2CQ99661 725 aa13.03□□□□□ -0.32
SHMT2-218ENST00000555213 ZNF341Q9BYN7 854 aa13.03□□□□□ -0.32
SHMT2-218ENST00000555213 DCP1AQ9NPI6 582 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-218ENST00000555213 PI4KBQ9UBF8 816 aa13.03□□□□□ -0.32
SHMT2-218ENST00000555213 ARPP21Q9UBL0 812 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-218ENST00000555213 HERC5Q9UII4 1024 aaKnown RBP13.03□□□□□ -0.32
SHMT2-218ENST00000555213 ANGEL1Q9UNK9 670 aaKnown RBP13.03□□□□□ -0.32
SHMT2-218ENST00000555213 TLL2Q9Y6L7 1015 aa13.03□□□□□ -0.32
SHMT2-218ENST00000555213 CCDC171Q6TFL3 1326 aa13.03□□□□□ -0.32
SHMT2-218ENST00000555213 NAV1Q8NEY1 1877 aa13.03□□□□□ -0.32
SHMT2-218ENST00000555213 FOCADQ5VW36 1801 aa13.02□□□□□ -0.32
SHMT2-218ENST00000555213 POLR2AP24928 1970 aaKnown RBP13.02□□□□□ -0.32
SHMT2-218ENST00000555213 DDTLA6NHG4 134 aaPredicted RBP13.02□□□□□ -0.33
SHMT2-218ENST00000555213 UNCXA6NJT0 531 aa13.02□□□□□ -0.33
SHMT2-218ENST00000555213 SGSM2O43147 1006 aa13.02□□□□□ -0.33
SHMT2-218ENST00000555213 PRKAB2O43741 272 aa13.02□□□□□ -0.33
SHMT2-218ENST00000555213 RBM25P49756 843 aaKnown RBP13.02□□□□□ -0.33
SHMT2-218ENST00000555213 HUNKP57058 714 aa13.02□□□□□ -0.33
SHMT2-218ENST00000555213 PAXIP1Q6ZW49 1069 aaPredicted RBP13.02□□□□□ -0.33
SHMT2-218ENST00000555213 PIAS4Q8N2W9 510 aaPredicted RBP13.02□□□□□ -0.33
SHMT2-218ENST00000555213 SEC62Q99442 399 aaKnown RBP13.02□□□□□ -0.33
SHMT2-218ENST00000555213 C22orf23Q9BZE7 217 aa13.02□□□□□ -0.33
SHMT2-218ENST00000555213 TAOK2Q9UL54 1235 aa13.02□□□□□ -0.33
SHMT2-218ENST00000555213 PALD1Q9ULE6 856 aa13.02□□□□□ -0.33
SHMT2-218ENST00000555213 CAPN15O75808 1086 aa13.01□□□□□ -0.33
SHMT2-218ENST00000555213 MAP3K11Q16584 847 aa13.01□□□□□ -0.33
SHMT2-218ENST00000555213 CCDC129Q6ZRS4 1044 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms