RNA–Protein interactions for RNA: ENST00000554437.5

SCFD1-211, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 688 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-211ENST00000554437 ARMC10Q8N2F6 343 aa8.41□□□□□ -1.06
SCFD1-211ENST00000554437 GAL3ST3Q96A11 431 aa8.41□□□□□ -1.06
SCFD1-211ENST00000554437 MYRFLQ96LU7 910 aa8.41□□□□□ -1.06
SCFD1-211ENST00000554437 CRIM1Q9NZV1 1036 aa8.41□□□□□ -1.06
SCFD1-211ENST00000554437 PCDHGC5Q9Y5F6 944 aa8.41□□□□□ -1.06
SCFD1-211ENST00000554437 ACTL7BQ9Y614 415 aa8.41□□□□□ -1.06
SCFD1-211ENST00000554437 DCDC2CA8MYV0 355 aa8.4□□□□□ -1.06
SCFD1-211ENST00000554437 DHX15O43143 795 aaKnown RBP8.4□□□□□ -1.06
SCFD1-211ENST00000554437 ASPAP45381 313 aa8.4□□□□□ -1.06
SCFD1-211ENST00000554437 FAM160A1Q05DH4 1040 aa8.4□□□□□ -1.06
SCFD1-211ENST00000554437 ZC3H12AQ5D1E8 599 aaKnown RBP8.4□□□□□ -1.06
SCFD1-211ENST00000554437 C9orf131Q5VYM1 1079 aa8.4□□□□□ -1.06
SCFD1-211ENST00000554437 DIEXFQ68CQ4 756 aaKnown RBP8.4□□□□□ -1.06
SCFD1-211ENST00000554437 TRIM42Q8IWZ5 723 aa8.4□□□□□ -1.06
SCFD1-211ENST00000554437 RHOVQ96L33 236 aa8.4□□□□□ -1.06
SCFD1-211ENST00000554437 KCNF1Q9H3M0 494 aa8.4□□□□□ -1.06
SCFD1-211ENST00000554437 CSADQ9Y600 493 aa8.4□□□□□ -1.06
SCFD1-211ENST00000554437 RXRBP28702 533 aa8.39□□□□□ -1.07
SCFD1-211ENST00000554437 HDLBPQ00341 1268 aaKnown RBP8.39□□□□□ -1.07
SCFD1-211ENST00000554437 SGO2Q562F6 1265 aa8.39□□□□□ -1.07
SCFD1-211ENST00000554437 SNAP47Q5SQN1 464 aa8.39□□□□□ -1.07
SCFD1-211ENST00000554437 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.39□□□□□ -1.07
SCFD1-211ENST00000554437 USP48Q86UV5 1035 aa8.39□□□□□ -1.07
SCFD1-211ENST00000554437 ELMO3Q96BJ8 720 aa8.39□□□□□ -1.07
SCFD1-211ENST00000554437 FANCD2OSQ96PS1 177 aa8.39□□□□□ -1.07
SCFD1-211ENST00000554437 ATXN3LQ9H3M9 355 aa8.39□□□□□ -1.07
SCFD1-211ENST00000554437 PIDD1Q9HB75 910 aa8.39□□□□□ -1.07
SCFD1-211ENST00000554437 HIF3AQ9Y2N7 669 aa8.39□□□□□ -1.07
SCFD1-211ENST00000554437 RAB6AP20340 208 aa8.38□□□□□ -1.07
SCFD1-211ENST00000554437 EIF4A3P38919 411 aaKnown RBP8.38□□□□□ -1.07
SCFD1-211ENST00000554437 INPP5AQ14642 412 aa8.38□□□□□ -1.07
SCFD1-211ENST00000554437 ZNF394Q53GI3 561 aa8.38□□□□□ -1.07
SCFD1-211ENST00000554437 CDPF1Q6NVV7 123 aa8.38□□□□□ -1.07
SCFD1-211ENST00000554437 BNC2Q6ZN30 1099 aaPredicted RBP8.38□□□□□ -1.07
SCFD1-211ENST00000554437 CCDC84Q86UT8 332 aaPredicted RBP8.38□□□□□ -1.07
SCFD1-211ENST00000554437 C12orf40Q86WS4 652 aa8.38□□□□□ -1.07
SCFD1-211ENST00000554437 FAM20CQ8IXL6 584 aa8.38□□□□□ -1.07
SCFD1-211ENST00000554437 GOLM1Q8NBJ4 401 aa8.38□□□□□ -1.07
SCFD1-211ENST00000554437 FBLIM1Q8WUP2 373 aa8.38□□□□□ -1.07
SCFD1-211ENST00000554437 PICK1Q9NRD5 415 aa8.38□□□□□ -1.07
SCFD1-211ENST00000554437 DISC1Q9NRI5 854 aa8.38□□□□□ -1.07
SCFD1-211ENST00000554437 FAM105AQ9NUU6 356 aa8.38□□□□□ -1.07
SCFD1-211ENST00000554437 MAP4P27816 1152 aaKnown RBP8.37□□□□□ -1.07
SCFD1-211ENST00000554437 ERVK-24P63145 666 aa8.37□□□□□ -1.07
SCFD1-211ENST00000554437 WIPI1Q5MNZ9 446 aaPredicted RBP8.37□□□□□ -1.07
SCFD1-211ENST00000554437 LRFN4Q6PJG9 635 aa8.37□□□□□ -1.07
SCFD1-211ENST00000554437 PRR23CQ6ZRP0 262 aa8.37□□□□□ -1.07
SCFD1-211ENST00000554437 HDXQ7Z353 690 aa8.37□□□□□ -1.07
SCFD1-211ENST00000554437 METTL16Q86W50 562 aaKnown RBP8.37□□□□□ -1.07
SCFD1-211ENST00000554437 NT5DC4Q86YG4 428 aa8.37□□□□□ -1.07
SCFD1-211ENST00000554437 PLPPR2Q96GM1 343 aa8.37□□□□□ -1.07
SCFD1-211ENST00000554437 YIPF2Q9BWQ6 316 aa8.37□□□□□ -1.07
SCFD1-211ENST00000554437 KRTAP9-9Q9BYP9 154 aa8.37□□□□□ -1.07
SCFD1-211ENST00000554437 KRTAP9-4Q9BYQ2 154 aa8.37□□□□□ -1.07
SCFD1-211ENST00000554437 GSX1Q9H4S2 264 aaPredicted RBP8.37□□□□□ -1.07
SCFD1-211ENST00000554437 RAXQ9Y2V3 346 aa8.37□□□□□ -1.07
SCFD1-211ENST00000554437 PCDHGB7Q9Y5F8 929 aa8.37□□□□□ -1.07
SCFD1-211ENST00000554437 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.36□□□□□ -1.07
SCFD1-211ENST00000554437 RNGTTO60942 597 aaKnown RBP8.36□□□□□ -1.07
SCFD1-211ENST00000554437 F13A1P00488 732 aa8.36□□□□□ -1.07
SCFD1-211ENST00000554437 TCF3P15923 654 aa8.36□□□□□ -1.07
SCFD1-211ENST00000554437 CDK8P49336 464 aa8.36□□□□□ -1.07
SCFD1-211ENST00000554437 TTLL4Q14679 1199 aa8.36□□□□□ -1.07
SCFD1-211ENST00000554437 PPM1JQ5JR12 505 aa8.36□□□□□ -1.07
SCFD1-211ENST00000554437 FBXL19Q6PCT2 694 aa8.36□□□□□ -1.07
SCFD1-211ENST00000554437 BEND4Q6ZU67 534 aa8.36□□□□□ -1.07
SCFD1-211ENST00000554437 STOML1Q9UBI4 398 aa8.36□□□□□ -1.07
SCFD1-211ENST00000554437 BPNT1O95861 308 aa8.35□□□□□ -1.07
SCFD1-211ENST00000554437 H2AFB1P0C5Y9 115 aa8.35□□□□□ -1.07
SCFD1-211ENST00000554437 H2AFB2P0C5Z0 115 aa8.35□□□□□ -1.07
SCFD1-211ENST00000554437 HCLS1P14317 486 aaPredicted RBP8.35□□□□□ -1.07
SCFD1-211ENST00000554437 GARTP22102 1010 aa8.35□□□□□ -1.07
SCFD1-211ENST00000554437 RSPO4Q2I0M5 234 aaPredicted RBP8.35□□□□□ -1.07
SCFD1-211ENST00000554437 CLEC10AQ8IUN9 316 aa8.35□□□□□ -1.07
SCFD1-211ENST00000554437 RNF214Q8ND24 703 aa8.35□□□□□ -1.07
SCFD1-211ENST00000554437 ZNF296Q8WUU4 475 aaPredicted RBP8.35□□□□□ -1.07
SCFD1-211ENST00000554437 GATAD2BQ8WXI9 593 aa8.35□□□□□ -1.07
SCFD1-211ENST00000554437 ACSS3Q9H6R3 686 aa8.35□□□□□ -1.07
SCFD1-211ENST00000554437 ADAMTS1Q9UHI8 967 aa8.35□□□□□ -1.07
SCFD1-211ENST00000554437 SUPT16HQ9Y5B9 1047 aaKnown RBP8.35□□□□□ -1.07
SCFD1-211ENST00000554437 SNCAIPQ9Y6H5 919 aa8.35□□□□□ -1.07
SCFD1-211ENST00000554437 FAM95CA0A1B0GW59 222 aa8.34□□□□□ -1.07
SCFD1-211ENST00000554437 PRAMEF27A3QJZ7 478 aa8.34□□□□□ -1.07
SCFD1-211ENST00000554437 NFICP08651 508 aa8.34□□□□□ -1.07
SCFD1-211ENST00000554437 RPL6Q02878 288 aaKnown RBP8.34□□□□□ -1.07
SCFD1-211ENST00000554437 NFKBIBQ15653 356 aa8.34□□□□□ -1.07
SCFD1-211ENST00000554437 NKAPLQ5M9Q1 402 aa8.34□□□□□ -1.07
SCFD1-211ENST00000554437 FAM83CQ9BQN1 747 aa8.34□□□□□ -1.07
SCFD1-211ENST00000554437 SPON2Q9BUD6 331 aa8.34□□□□□ -1.07
SCFD1-211ENST00000554437 SSU72Q9NP77 194 aaKnown RBP8.34□□□□□ -1.07
SCFD1-211ENST00000554437 DDX41Q9UJV9 622 aaKnown RBP8.34□□□□□ -1.07
SCFD1-211ENST00000554437 DAGLAQ9Y4D2 1042 aa8.34□□□□□ -1.07
SCFD1-211ENST00000554437 HMX2A2RU54 273 aa8.33□□□□□ -1.08
SCFD1-211ENST00000554437 FAM221AA4D161 298 aa8.33□□□□□ -1.08
SCFD1-211ENST00000554437 CILPO75339 1184 aa8.33□□□□□ -1.08
SCFD1-211ENST00000554437 RACK1P63244 317 aaKnown RBP8.33□□□□□ -1.08
SCFD1-211ENST00000554437 MAP7Q14244 749 aa8.33□□□□□ -1.08
SCFD1-211ENST00000554437 PAOXQ6QHF9 649 aa8.33□□□□□ -1.08
SCFD1-211ENST00000554437 FAM196AQ6ZSG2 479 aa8.33□□□□□ -1.08
SCFD1-211ENST00000554437 CYFIP1Q7L576 1253 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 93.3 ms