RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 MYH7P12883 1935 aa16.54■□□□□ 0.24
PTCH1-213ENST00000546820 CHGBP05060 677 aa16.53■□□□□ 0.24
PTCH1-213ENST00000546820 MFAP1P55081 439 aaKnown RBP16.53■□□□□ 0.24
PTCH1-213ENST00000546820 FMR1Q06787 632 aaKnown RBP eCLIP16.53■□□□□ 0.242e-7■■■■■ 26.8
PTCH1-213ENST00000546820 TTLL12Q14166 644 aaPredicted RBP16.53■□□□□ 0.24
PTCH1-213ENST00000546820 MCMDC2Q4G0Z9 681 aa16.53■□□□□ 0.24
PTCH1-213ENST00000546820 BMP2KLQ5H9B9 411 aa16.53■□□□□ 0.24
PTCH1-213ENST00000546820 CST9Q5W186 159 aa16.53■□□□□ 0.24
PTCH1-213ENST00000546820 DCAF15Q66K64 600 aa16.53■□□□□ 0.24
PTCH1-213ENST00000546820 ARMC9Q7Z3E5 817 aa16.53■□□□□ 0.24
PTCH1-213ENST00000546820 MAPKAPK5Q8IW41 473 aa16.53■□□□□ 0.24
PTCH1-213ENST00000546820 LCORLQ8N3X6 602 aa16.53■□□□□ 0.24
PTCH1-213ENST00000546820 TEPSINQ96N21 525 aa16.53■□□□□ 0.24
PTCH1-213ENST00000546820 STRBPQ96SI9 672 aaKnown RBP16.53■□□□□ 0.24
PTCH1-213ENST00000546820 OSBPL5Q9H0X9 879 aaPredicted RBP16.53■□□□□ 0.24
PTCH1-213ENST00000546820 GBA2Q9HCG7 927 aaPredicted RBP16.53■□□□□ 0.24
PTCH1-213ENST00000546820 DDX4Q9NQI0 724 aaKnown RBP16.53■□□□□ 0.24
PTCH1-213ENST00000546820 ATP8A2Q9NTI2 1148 aa16.53■□□□□ 0.24
PTCH1-213ENST00000546820 SLC4A4Q9Y6R1 1079 aa16.53■□□□□ 0.24
PTCH1-213ENST00000546820 GPAA1O43292 621 aa16.52■□□□□ 0.24
PTCH1-213ENST00000546820 HSPA6P17066 643 aa16.52■□□□□ 0.24
PTCH1-213ENST00000546820 ZFPM1Q8IX07 1006 aa16.52■□□□□ 0.24
PTCH1-213ENST00000546820 AMOTL1Q8IY63 956 aa16.52■□□□□ 0.24
PTCH1-213ENST00000546820 RUFY2Q8WXA3 655 aa16.52■□□□□ 0.24
PTCH1-213ENST00000546820 CREBZFQ9NS37 354 aa16.52■□□□□ 0.24
PTCH1-213ENST00000546820 RPAP1Q9BWH6 1393 aaPredicted RBP16.51■□□□□ 0.23
PTCH1-213ENST00000546820 FLT1P17948 1338 aa16.51■□□□□ 0.23
PTCH1-213ENST00000546820 PATL2C9JE40 543 aaKnown RBP16.51■□□□□ 0.23
PTCH1-213ENST00000546820 APPP05067 770 aa16.51■□□□□ 0.23
PTCH1-213ENST00000546820 HLA-DOAP06340 250 aa16.51■□□□□ 0.23
PTCH1-213ENST00000546820 NMIQ13287 307 aaPredicted RBP16.51■□□□□ 0.23
PTCH1-213ENST00000546820 TTC6Q86TZ1 520 aa16.51■□□□□ 0.23
PTCH1-213ENST00000546820 CSRNP1Q96S65 589 aa16.51■□□□□ 0.23
PTCH1-213ENST00000546820 NACAP1Q9BZK3 213 aa16.51■□□□□ 0.23
PTCH1-213ENST00000546820 PI4KBQ9UBF8 816 aa16.51■□□□□ 0.23
PTCH1-213ENST00000546820 ABT1Q9ULW3 272 aaKnown RBP16.51■□□□□ 0.23
PTCH1-213ENST00000546820 AK9Q5TCS8 1911 aa16.51■□□□□ 0.23
PTCH1-213ENST00000546820 M0R2C6 588 aa16.5■□□□□ 0.23
PTCH1-213ENST00000546820 POLR3DP05423 398 aaPredicted RBP16.5■□□□□ 0.23
PTCH1-213ENST00000546820 IREB2P48200 963 aaKnown RBP16.5■□□□□ 0.23
PTCH1-213ENST00000546820 GIMAP6Q6P9H5 292 aa16.5■□□□□ 0.23
PTCH1-213ENST00000546820 CWC27Q6UX04 472 aaKnown RBP16.5■□□□□ 0.23
PTCH1-213ENST00000546820 SKAP1Q86WV1 359 aa16.5■□□□□ 0.23
PTCH1-213ENST00000546820 FOXP4Q8IVH2 680 aaPredicted RBP16.5■□□□□ 0.23
PTCH1-213ENST00000546820 SDR42E1Q8WUS8 393 aa16.5■□□□□ 0.23
PTCH1-213ENST00000546820 FAM227BQ96M60 508 aa16.5■□□□□ 0.23
PTCH1-213ENST00000546820 SEC62Q99442 399 aaKnown RBP16.5■□□□□ 0.23
PTCH1-213ENST00000546820 TRIM34Q9BYJ4 488 aa16.5■□□□□ 0.23
PTCH1-213ENST00000546820 MCM9Q9NXL9 1143 aa16.5■□□□□ 0.23
PTCH1-213ENST00000546820 TRPM7Q96QT4 1865 aa16.5■□□□□ 0.23
PTCH1-213ENST00000546820 DDTLA6NHG4 134 aaPredicted RBP16.49■□□□□ 0.23
PTCH1-213ENST00000546820 UNCXA6NJT0 531 aa16.49■□□□□ 0.23
PTCH1-213ENST00000546820 PRKAB2O43741 272 aa16.49■□□□□ 0.23
PTCH1-213ENST00000546820 PRKG1Q13976 671 aa16.49■□□□□ 0.23
PTCH1-213ENST00000546820 CASC1Q6TDU7 716 aa16.49■□□□□ 0.23
PTCH1-213ENST00000546820 DCP1AQ9NPI6 582 aaPredicted RBP16.49■□□□□ 0.23
PTCH1-213ENST00000546820 SAP30BPQ9UHR5 308 aaKnown RBP16.49■□□□□ 0.23
PTCH1-213ENST00000546820 PALD1Q9ULE6 856 aa16.49■□□□□ 0.23
PTCH1-213ENST00000546820 ANGEL1Q9UNK9 670 aaKnown RBP16.49■□□□□ 0.23
PTCH1-213ENST00000546820 GTF3C3Q9Y5Q9 886 aa16.49■□□□□ 0.23
PTCH1-213ENST00000546820 ATRNL1Q5VV63 1379 aa16.49■□□□□ 0.23
PTCH1-213ENST00000546820 COL2A1P02458 1487 aaPredicted RBP16.48■□□□□ 0.23
PTCH1-213ENST00000546820 A0A0D9SFI3 127 aa16.48■□□□□ 0.23
PTCH1-213ENST00000546820 TBC1D12O60347 775 aa16.48■□□□□ 0.23
PTCH1-213ENST00000546820 USP2O75604 605 aaPredicted RBP16.48■□□□□ 0.23
PTCH1-213ENST00000546820 CHMLP26374 656 aa16.48■□□□□ 0.23
PTCH1-213ENST00000546820 MIGA2Q7L4E1 593 aa16.48■□□□□ 0.23
PTCH1-213ENST00000546820 SH3BP5LQ7L8J4 393 aa16.48■□□□□ 0.23
PTCH1-213ENST00000546820 CRACR2BQ8N4Y2 399 aaPredicted RBP16.48■□□□□ 0.23
PTCH1-213ENST00000546820 ZNF341Q9BYN7 854 aa16.48■□□□□ 0.23
PTCH1-213ENST00000546820 MKRN1Q9UHC7 482 aaKnown RBP16.48■□□□□ 0.23
PTCH1-213ENST00000546820 HERC5Q9UII4 1024 aaKnown RBP16.48■□□□□ 0.23
PTCH1-213ENST00000546820 TLL2Q9Y6L7 1015 aa16.48■□□□□ 0.23
PTCH1-213ENST00000546820 GSG1L2A8MUP6 293 aa16.47■□□□□ 0.23
PTCH1-213ENST00000546820 HUNKP57058 714 aa16.47■□□□□ 0.23
PTCH1-213ENST00000546820 MAP3K11Q16584 847 aa16.47■□□□□ 0.23
PTCH1-213ENST00000546820 SAPCD2Q86UD0 394 aa16.47■□□□□ 0.23
PTCH1-213ENST00000546820 CDAN1Q8IWY9 1227 aa16.47■□□□□ 0.23
PTCH1-213ENST00000546820 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.47■□□□□ 0.23
PTCH1-213ENST00000546820 TAOK2Q9UL54 1235 aa16.47■□□□□ 0.23
PTCH1-213ENST00000546820 CCDC171Q6TFL3 1326 aa16.46■□□□□ 0.23
PTCH1-213ENST00000546820 UBE2Q2LH0YL09 131 aa16.46■□□□□ 0.23
PTCH1-213ENST00000546820 TDO2P48775 406 aa16.46■□□□□ 0.23
PTCH1-213ENST00000546820 MAP3K9P80192 1104 aa16.46■□□□□ 0.23
PTCH1-213ENST00000546820 MAP3K10Q02779 954 aa16.46■□□□□ 0.23
PTCH1-213ENST00000546820 DEFB115Q30KQ5 88 aa16.46■□□□□ 0.23
PTCH1-213ENST00000546820 CCDC129Q6ZRS4 1044 aa16.46■□□□□ 0.23
PTCH1-213ENST00000546820 ANKRD13AQ8IZ07 590 aa16.46■□□□□ 0.23
PTCH1-213ENST00000546820 IFNL3Q8IZI9 196 aa16.46■□□□□ 0.23
PTCH1-213ENST00000546820 HHIPL1Q96JK4 782 aa16.46■□□□□ 0.23
PTCH1-213ENST00000546820 NAPBQ9H115 298 aa16.46■□□□□ 0.23
PTCH1-213ENST00000546820 USP17L12C9JPN9 530 aa16.45■□□□□ 0.22
PTCH1-213ENST00000546820 USP17L21D6R901 530 aa16.45■□□□□ 0.22
PTCH1-213ENST00000546820 SBK1Q52WX2 424 aa16.45■□□□□ 0.22
PTCH1-213ENST00000546820 LDLRAD1Q5T700 205 aa16.45■□□□□ 0.22
PTCH1-213ENST00000546820 KLRG1Q96E93 195 aa16.45■□□□□ 0.22
PTCH1-213ENST00000546820 SLC10A4Q96EP9 437 aa16.45■□□□□ 0.22
PTCH1-213ENST00000546820 EHD4Q9H223 541 aa16.45■□□□□ 0.22
PTCH1-213ENST00000546820 ARPP21Q9UBL0 812 aaPredicted RBP16.45■□□□□ 0.22
PTCH1-213ENST00000546820 SERPINB13Q9UIV8 391 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms