RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 ADKP55263 362 aaKnown RBP17.35■□□□□ 0.37
USP28-214ENST00000545540 ATL3Q6DD88 541 aa17.35■□□□□ 0.37
USP28-214ENST00000545540 KCNH3Q9ULD8 1083 aa17.35■□□□□ 0.37
USP28-214ENST00000545540 PTPAQ15257 358 aa17.34■□□□□ 0.37
USP28-214ENST00000545540 JAG2Q9Y219 1238 aa17.34■□□□□ 0.37
USP28-214ENST00000545540 PCDHB6Q9Y5E3 794 aa17.34■□□□□ 0.37
USP28-214ENST00000545540 ADAMTS7Q9UKP4 1686 aa17.34■□□□□ 0.37
USP28-214ENST00000545540 STX17P56962 302 aa17.34■□□□□ 0.37
USP28-214ENST00000545540 NTRK3Q16288 839 aa17.34■□□□□ 0.37
USP28-214ENST00000545540 RIC1Q4ADV7 1423 aa17.34■□□□□ 0.37
USP28-214ENST00000545540 DZIP3Q86Y13 1208 aaKnown RBP17.34■□□□□ 0.37
USP28-214ENST00000545540 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.34■□□□□ 0.37
USP28-214ENST00000545540 NWD2Q9ULI1 1742 aa17.34■□□□□ 0.37
USP28-214ENST00000545540 SRCAPQ6ZRS2 3230 aa17.34■□□□□ 0.37
USP28-214ENST00000545540 DMTNQ08495 405 aa17.34■□□□□ 0.37
USP28-214ENST00000545540 DIS3L2Q8IYB7 885 aaKnown RBP17.34■□□□□ 0.37
USP28-214ENST00000545540 CPLX3Q8WVH0 158 aa17.34■□□□□ 0.37
USP28-214ENST00000545540 FANCGO15287 622 aa17.33■□□□□ 0.37
USP28-214ENST00000545540 NOM1Q5C9Z4 860 aaKnown RBP17.33■□□□□ 0.37
USP28-214ENST00000545540 SPATA5Q8NB90 893 aa17.33■□□□□ 0.37
USP28-214ENST00000545540 SLC4A4Q9Y6R1 1079 aa17.33■□□□□ 0.37
USP28-214ENST00000545540 AFMP43652 599 aa17.33■□□□□ 0.36
USP28-214ENST00000545540 MPHOSPH8Q99549 860 aa17.33■□□□□ 0.36
USP28-214ENST00000545540 MAP3K14Q99558 947 aa17.33■□□□□ 0.36
USP28-214ENST00000545540 SLAIN2Q9P270 581 aa17.33■□□□□ 0.36
USP28-214ENST00000545540 SERTAD1Q9UHV2 236 aa17.33■□□□□ 0.36
USP28-214ENST00000545540 CDK11BP21127 795 aaKnown RBP17.33■□□□□ 0.36
USP28-214ENST00000545540 TOB1P50616 345 aaPredicted RBP17.33■□□□□ 0.36
USP28-214ENST00000545540 FMR1Q06787 632 aaKnown RBP eCLIP17.33■□□□□ 0.36
USP28-214ENST00000545540 SSRP1Q08945 709 aaKnown RBP17.33■□□□□ 0.36
USP28-214ENST00000545540 CPLX2Q6PUV4 134 aaKnown RBP17.33■□□□□ 0.36
USP28-214ENST00000545540 SMYD4Q8IYR2 804 aaPredicted RBP17.33■□□□□ 0.36
USP28-214ENST00000545540 CCDC24Q8N4L8 307 aa17.33■□□□□ 0.36
USP28-214ENST00000545540 VGLL2Q8N8G2 317 aa17.33■□□□□ 0.36
USP28-214ENST00000545540 DESI2Q9BSY9 194 aa17.33■□□□□ 0.36
USP28-214ENST00000545540 CARD10Q9BWT7 1032 aa17.33■□□□□ 0.36
USP28-214ENST00000545540 CABP5Q9NP86 173 aa17.33■□□□□ 0.36
USP28-214ENST00000545540 MYO5AQ9Y4I1 1855 aaKnown RBP17.32■□□□□ 0.36
USP28-214ENST00000545540 URI1O94763 535 aaPredicted RBP17.32■□□□□ 0.36
USP28-214ENST00000545540 ZNF771Q7L3S4 317 aaPredicted RBP17.32■□□□□ 0.36
USP28-214ENST00000545540 LRP2BPQ9P2M1 347 aa17.32■□□□□ 0.36
USP28-214ENST00000545540 ZSWIM4Q9H7M6 989 aa17.32■□□□□ 0.36
USP28-214ENST00000545540 ALS2Q96Q42 1657 aa17.32■□□□□ 0.36
USP28-214ENST00000545540 NEMFO60524 1076 aa17.31■□□□□ 0.36
USP28-214ENST00000545540 TPM4P67936 248 aa17.31■□□□□ 0.36
USP28-214ENST00000545540 MFSD6Q6ZSS7 791 aa17.31■□□□□ 0.36
USP28-214ENST00000545540 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.31■□□□□ 0.36
USP28-214ENST00000545540 OSBPL5Q9H0X9 879 aaPredicted RBP17.31■□□□□ 0.36
USP28-214ENST00000545540 COL18A1P39060 1754 aa17.31■□□□□ 0.36
USP28-214ENST00000545540 KCPQ6ZWJ8 1503 aa17.31■□□□□ 0.36
USP28-214ENST00000545540 TCRBV5S4A2TA0A5A2 114 aa17.31■□□□□ 0.36
USP28-214ENST00000545540 GSDMDP57764 484 aa17.31■□□□□ 0.36
USP28-214ENST00000545540 SUSD4Q5VX71 490 aa17.31■□□□□ 0.36
USP28-214ENST00000545540 SAMSN1Q9NSI8 373 aaKnown RBP17.31■□□□□ 0.36
USP28-214ENST00000545540 MTMR7Q9Y216 660 aa17.31■□□□□ 0.36
USP28-214ENST00000545540 GSG1L2A8MUP6 293 aa17.31■□□□□ 0.36
USP28-214ENST00000545540 SLU7O95391 586 aaKnown RBP17.31■□□□□ 0.36
USP28-214ENST00000545540 ADGRA1Q86SQ6 560 aa17.31■□□□□ 0.36
USP28-214ENST00000545540 IRX2Q9BZI1 471 aaPredicted RBP17.31■□□□□ 0.36
USP28-214ENST00000545540 CPDO75976 1380 aa17.3■□□□□ 0.36
USP28-214ENST00000545540 GLI3P10071 1580 aa17.3■□□□□ 0.36
USP28-214ENST00000545540 CYP19A1P11511 503 aaPredicted RBP17.3■□□□□ 0.36
USP28-214ENST00000545540 MYL5Q02045 173 aa17.3■□□□□ 0.36
USP28-214ENST00000545540 INTS13Q9NVM9 706 aa17.3■□□□□ 0.36
USP28-214ENST00000545540 VPS54Q9P1Q0 977 aa17.3■□□□□ 0.36
USP28-214ENST00000545540 A0A0U1RQJ8 604 aa17.3■□□□□ 0.36
USP28-214ENST00000545540 TOP1P11387 765 aaKnown RBP17.3■□□□□ 0.36
USP28-214ENST00000545540 NKX1-1Q15270 411 aaPredicted RBP17.3■□□□□ 0.36
USP28-214ENST00000545540 EARS2Q5JPH6 523 aaKnown RBP17.3■□□□□ 0.36
USP28-214ENST00000545540 ATRIPQ8WXE1 791 aa17.3■□□□□ 0.36
USP28-214ENST00000545540 WNT7AO00755 349 aa17.3■□□□□ 0.36
USP28-214ENST00000545540 KARSQ15046 597 aaKnown RBP17.3■□□□□ 0.36
USP28-214ENST00000545540 OLFM4Q6UX06 510 aa17.3■□□□□ 0.36
USP28-214ENST00000545540 KRBA2Q6ZNG9 492 aa17.3■□□□□ 0.36
USP28-214ENST00000545540 BICDL1Q6ZP65 573 aa17.29■□□□□ 0.36
USP28-214ENST00000545540 ZNF446Q9NWS9 450 aa17.29■□□□□ 0.36
USP28-214ENST00000545540 CGNQ9P2M7 1197 aaKnown RBP17.29■□□□□ 0.36
USP28-214ENST00000545540 ERICH4A6NGS2 130 aa17.29■□□□□ 0.36
USP28-214ENST00000545540 GYG1P46976 350 aa17.29■□□□□ 0.36
USP28-214ENST00000545540 MTF1Q14872 753 aa17.29■□□□□ 0.36
USP28-214ENST00000545540 NOSTRINQ8IVI9 506 aa17.29■□□□□ 0.36
USP28-214ENST00000545540 EPSTI1Q96J88 318 aa17.29■□□□□ 0.36
USP28-214ENST00000545540 NFE2L3Q9Y4A8 694 aa17.29■□□□□ 0.36
USP28-214ENST00000545540 TJP1Q07157 1748 aa17.29■□□□□ 0.36
USP28-214ENST00000545540 PATL2C9JE40 543 aaKnown RBP17.28■□□□□ 0.36
USP28-214ENST00000545540 ARHGAP29Q52LW3 1261 aa17.28■□□□□ 0.36
USP28-214ENST00000545540 RESP18Q5W5W9 173 aa17.28■□□□□ 0.36
USP28-214ENST00000545540 DHX58Q96C10 678 aa17.28■□□□□ 0.36
USP28-214ENST00000545540 OGFRQ9NZT2 677 aa17.28■□□□□ 0.36
USP28-214ENST00000545540 DDX41Q9UJV9 622 aaKnown RBP17.28■□□□□ 0.36
USP28-214ENST00000545540 HPSEQ9Y251 543 aa17.28■□□□□ 0.36
USP28-214ENST00000545540 ZNF335Q9H4Z2 1342 aaPredicted RBP17.28■□□□□ 0.36
USP28-214ENST00000545540 PDE8AO60658 829 aa17.28■□□□□ 0.36
USP28-214ENST00000545540 CDKL5O76039 1030 aa17.28■□□□□ 0.36
USP28-214ENST00000545540 MAP3K12Q12852 859 aa17.28■□□□□ 0.36
USP28-214ENST00000545540 TRIM28Q13263 835 aaKnown RBP17.28■□□□□ 0.36
USP28-214ENST00000545540 WTAPQ15007 396 aa17.28■□□□□ 0.36
USP28-214ENST00000545540 UBE3CQ15386 1083 aa17.28■□□□□ 0.36
USP28-214ENST00000545540 PUM3Q15397 648 aaKnown RBP17.28■□□□□ 0.36
USP28-214ENST00000545540 RTN1Q16799 776 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 95.5 ms