RNA–Protein interactions for RNA: ENST00000541903.6

VPS53-205, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-205ENST00000541903 MAPKAPK5Q8IW41 473 aa8.71□□□□□ -1.02
VPS53-205ENST00000541903 TGFBRAP1Q8WUH2 860 aa8.71□□□□□ -1.02
VPS53-205ENST00000541903 BRF1Q92994 677 aa8.71□□□□□ -1.02
VPS53-205ENST00000541903 INTS4Q96HW7 963 aaKnown RBP8.71□□□□□ -1.02
VPS53-205ENST00000541903 ZDHHC15Q96MV8 337 aa8.71□□□□□ -1.02
VPS53-205ENST00000541903 LARP6Q9BRS8 491 aaKnown RBP8.71□□□□□ -1.02
VPS53-205ENST00000541903 MRIQ9BWK5 157 aa8.71□□□□□ -1.02
VPS53-205ENST00000541903 CWC22Q9HCG8 908 aaKnown RBP8.71□□□□□ -1.02
VPS53-205ENST00000541903 CHMP5Q9NZZ3 219 aa8.71□□□□□ -1.02
VPS53-205ENST00000541903 SERPINA10Q9UK55 444 aa8.71□□□□□ -1.02
VPS53-205ENST00000541903 HDAC9Q9UKV0 1011 aa8.71□□□□□ -1.02
VPS53-205ENST00000541903 TPCN1Q9ULQ1 816 aa8.71□□□□□ -1.02
VPS53-205ENST00000541903 CIZ1Q9ULV3 898 aaPredicted RBP8.71□□□□□ -1.02
VPS53-205ENST00000541903 BRCA1P38398 1863 aaKnown RBP8.7□□□□□ -1.02
VPS53-205ENST00000541903 COL4A5P29400 1685 aa8.7□□□□□ -1.02
VPS53-205ENST00000541903 CYP2D7A0A087X1C5 515 aa8.7□□□□□ -1.02
VPS53-205ENST00000541903 PSMD14O00487 310 aa8.7□□□□□ -1.02
VPS53-205ENST00000541903 KDM4AO75164 1064 aa8.7□□□□□ -1.02
VPS53-205ENST00000541903 POLR3DP05423 398 aaPredicted RBP8.7□□□□□ -1.02
VPS53-205ENST00000541903 VIL1P09327 827 aaKnown RBP8.7□□□□□ -1.02
VPS53-205ENST00000541903 CYP2D6P10635 497 aa8.7□□□□□ -1.02
VPS53-205ENST00000541903 NT5C2P49902 561 aa8.7□□□□□ -1.02
VPS53-205ENST00000541903 RASSF7Q02833 373 aa8.7□□□□□ -1.02
VPS53-205ENST00000541903 PDE4BQ07343 736 aa8.7□□□□□ -1.02
VPS53-205ENST00000541903 COL9A3Q14050 684 aaPredicted RBP8.7□□□□□ -1.02
VPS53-205ENST00000541903 SART3Q15020 963 aaKnown RBP8.7□□□□□ -1.02
VPS53-205ENST00000541903 TNIP1Q15025 636 aa8.7□□□□□ -1.02
VPS53-205ENST00000541903 CIAPIN1Q6FI81 312 aa8.7□□□□□ -1.02
VPS53-205ENST00000541903 CHST3Q7LGC8 479 aa8.7□□□□□ -1.02
VPS53-205ENST00000541903 CCDC83Q8IWF9 413 aa8.7□□□□□ -1.02
VPS53-205ENST00000541903 STK11IPQ8N1F8 1099 aa8.7□□□□□ -1.02
VPS53-205ENST00000541903 ESR2Q92731 530 aa8.7□□□□□ -1.02
VPS53-205ENST00000541903 CHMP4CQ96CF2 233 aa8.7□□□□□ -1.02
VPS53-205ENST00000541903 TMEM87BQ96K49 555 aa8.7□□□□□ -1.02
VPS53-205ENST00000541903 LRRC2Q9BYS8 371 aa8.7□□□□□ -1.02
VPS53-205ENST00000541903 USP40Q9NVE5 1235 aa8.7□□□□□ -1.02
VPS53-205ENST00000541903 MKRN1Q9UHC7 482 aaKnown RBP8.7□□□□□ -1.02
VPS53-205ENST00000541903 SAP30BPQ9UHR5 308 aaKnown RBP8.7□□□□□ -1.02
VPS53-205ENST00000541903 NAP1L2Q9ULW6 460 aaPredicted RBP8.7□□□□□ -1.02
VPS53-205ENST00000541903 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.7□□□□□ -1.02
VPS53-205ENST00000541903 FLT1P17948 1338 aa8.7□□□□□ -1.02
VPS53-205ENST00000541903 ROBO3Q96MS0 1386 aa8.7□□□□□ -1.02
VPS53-205ENST00000541903 ERICH2A1L162 156 aa8.69□□□□□ -1.02
VPS53-205ENST00000541903 SH2B2O14492 632 aaPredicted RBP8.69□□□□□ -1.02
VPS53-205ENST00000541903 ORC4O43929 436 aa8.69□□□□□ -1.02
VPS53-205ENST00000541903 LARGE1O95461 756 aa8.69□□□□□ -1.02
VPS53-205ENST00000541903 USP17L8P0C7I0 530 aa8.69□□□□□ -1.02
VPS53-205ENST00000541903 EIF6P56537 245 aaKnown RBP8.69□□□□□ -1.02
VPS53-205ENST00000541903 ANTXR2P58335 489 aa8.69□□□□□ -1.02
VPS53-205ENST00000541903 PICALMQ13492 652 aa8.69□□□□□ -1.02
VPS53-205ENST00000541903 ME3Q16798 604 aa8.69□□□□□ -1.02
VPS53-205ENST00000541903 CFAP100Q494V2 611 aa8.69□□□□□ -1.02
VPS53-205ENST00000541903 TMEM67Q5HYA8 995 aa8.69□□□□□ -1.02
VPS53-205ENST00000541903 C12orf60Q5U649 245 aa8.69□□□□□ -1.02
VPS53-205ENST00000541903 APOBEC3HQ6NTF7 200 aaKnown RBP8.69□□□□□ -1.02
VPS53-205ENST00000541903 CDC42EP5Q6NZY7 148 aa8.69□□□□□ -1.02
VPS53-205ENST00000541903 CYB5R4Q7L1T6 521 aa8.69□□□□□ -1.02
VPS53-205ENST00000541903 FBXL16Q8N461 479 aa8.69□□□□□ -1.02
VPS53-205ENST00000541903 OGFOD1Q8N543 542 aa8.69□□□□□ -1.02
VPS53-205ENST00000541903 AGBL3Q8NEM8 1001 aa8.69□□□□□ -1.02
VPS53-205ENST00000541903 UBAC1Q9BSL1 405 aa8.69□□□□□ -1.02
VPS53-205ENST00000541903 MTA3Q9BTC8 594 aa8.69□□□□□ -1.02
VPS53-205ENST00000541903 AGXT2Q9BYV1 514 aa8.69□□□□□ -1.02
VPS53-205ENST00000541903 ZNF287Q9HBT7 754 aa8.69□□□□□ -1.02
VPS53-205ENST00000541903 TMOD2Q9NZR1 351 aa8.69□□□□□ -1.02
VPS53-205ENST00000541903 ANGEL1Q9UNK9 670 aaKnown RBP8.69□□□□□ -1.02
VPS53-205ENST00000541903 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.69□□□□□ -1.02
VPS53-205ENST00000541903 CHD4Q14839 1912 aa8.68□□□□□ -1.02
VPS53-205ENST00000541903 GOLGA8BA8MQT2 603 aa8.68□□□□□ -1.02
VPS53-205ENST00000541903 IFIT3O14879 490 aaKnown RBP8.68□□□□□ -1.02
VPS53-205ENST00000541903 RANBP6O60518 1105 aaKnown RBP8.68□□□□□ -1.02
VPS53-205ENST00000541903 WDHD1O75717 1129 aaPredicted RBP8.68□□□□□ -1.02
VPS53-205ENST00000541903 FGRP09769 529 aa8.68□□□□□ -1.02
VPS53-205ENST00000541903 DDIT3P35638 169 aa8.68□□□□□ -1.02
VPS53-205ENST00000541903 NUCB2P80303 420 aa8.68□□□□□ -1.02
VPS53-205ENST00000541903 CXCL9Q07325 125 aa8.68□□□□□ -1.02
VPS53-205ENST00000541903 APOBRQ0VD83 1088 aa8.68□□□□□ -1.02
VPS53-205ENST00000541903 STK3Q13188 491 aa8.68□□□□□ -1.02
VPS53-205ENST00000541903 DLGAP5Q15398 846 aa8.68□□□□□ -1.02
VPS53-205ENST00000541903 SLC4A8Q2Y0W8 1093 aa8.68□□□□□ -1.02
VPS53-205ENST00000541903 NFXL1Q6ZNB6 911 aa8.68□□□□□ -1.02
VPS53-205ENST00000541903 ARHGAP27Q6ZUM4 889 aa8.68□□□□□ -1.02
VPS53-205ENST00000541903 TTC6Q86TZ1 520 aa8.68□□□□□ -1.02
VPS53-205ENST00000541903 NECAB1Q8N987 351 aa8.68□□□□□ -1.02
VPS53-205ENST00000541903 GTF3C6Q969F1 213 aa8.68□□□□□ -1.02
VPS53-205ENST00000541903 SYT17Q9BSW7 474 aa8.68□□□□□ -1.02
VPS53-205ENST00000541903 INCENPQ9NQS7 918 aa8.68□□□□□ -1.02
VPS53-205ENST00000541903 SMC3Q9UQE7 1217 aa8.68□□□□□ -1.02
VPS53-205ENST00000541903 TACC3Q9Y6A5 838 aa8.68□□□□□ -1.02
VPS53-205ENST00000541903 LAMB1P07942 1786 aa8.68□□□□□ -1.02
VPS53-205ENST00000541903 FER1L6Q2WGJ9 1857 aa8.68□□□□□ -1.02
VPS53-205ENST00000541903 NAV1Q8NEY1 1877 aa8.68□□□□□ -1.02
VPS53-205ENST00000541903 MYH2Q9UKX2 1941 aa8.68□□□□□ -1.02
VPS53-205ENST00000541903 SCN9AQ15858 1988 aa8.68□□□□□ -1.02
VPS53-205ENST00000541903 KLF18A0A0U1RQI7 1052 aa8.67□□□□□ -1.02
VPS53-205ENST00000541903 CCDC69A6NI79 296 aa8.67□□□□□ -1.02
VPS53-205ENST00000541903 TSPY2A6NKD2 308 aa8.67□□□□□ -1.02
VPS53-205ENST00000541903 PFKFB2O60825 505 aa8.67□□□□□ -1.02
VPS53-205ENST00000541903 PRDM1O75626 825 aa8.67□□□□□ -1.02
VPS53-205ENST00000541903 HLA-DOAP06340 250 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms