RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 SPTLC2O15270 562 aa16.13■□□□□ 0.17
COLCA1-204ENST00000540738 DNM2P50570 870 aa16.13■□□□□ 0.17
COLCA1-204ENST00000540738 USP14P54578 494 aa16.13■□□□□ 0.17
COLCA1-204ENST00000540738 AKNAD1Q5T1N1 836 aa16.13■□□□□ 0.17
COLCA1-204ENST00000540738 ABCC4O15439 1325 aa16.13■□□□□ 0.17
COLCA1-204ENST00000540738 ENOX2Q16206 610 aaKnown RBP16.13■□□□□ 0.17
COLCA1-204ENST00000540738 SKAP1Q86WV1 359 aa16.13■□□□□ 0.17
COLCA1-204ENST00000540738 LMTK2Q8IWU2 1503 aa16.13■□□□□ 0.17
COLCA1-204ENST00000540738 ARHGEF40Q8TER5 1519 aa16.13■□□□□ 0.17
COLCA1-204ENST00000540738 GLI2P10070 1586 aa16.13■□□□□ 0.17
COLCA1-204ENST00000540738 DIP2CQ9Y2E4 1556 aa16.13■□□□□ 0.17
COLCA1-204ENST00000540738 USP17L12C9JPN9 530 aa16.12■□□□□ 0.17
COLCA1-204ENST00000540738 USP17L21D6R901 530 aa16.12■□□□□ 0.17
COLCA1-204ENST00000540738 ZBTB7AO95365 584 aa16.12■□□□□ 0.17
COLCA1-204ENST00000540738 PCP11498 1178 aaKnown RBP16.12■□□□□ 0.17
COLCA1-204ENST00000540738 OSBPP22059 807 aa16.12■□□□□ 0.17
COLCA1-204ENST00000540738 AK2P54819 239 aa16.12■□□□□ 0.17
COLCA1-204ENST00000540738 RILPL1Q5EBL4 403 aa16.12■□□□□ 0.17
COLCA1-204ENST00000540738 ZNF526Q8TF50 670 aaPredicted RBP16.12■□□□□ 0.17
COLCA1-204ENST00000540738 AFMP43652 599 aa16.12■□□□□ 0.17
COLCA1-204ENST00000540738 IREB2P48200 963 aaKnown RBP16.12■□□□□ 0.17
COLCA1-204ENST00000540738 KIFC2Q96AC6 838 aa16.12■□□□□ 0.17
COLCA1-204ENST00000540738 PKD2L1Q9P0L9 805 aa16.12■□□□□ 0.17
COLCA1-204ENST00000540738 KCNG1Q9UIX4 513 aa16.12■□□□□ 0.17
COLCA1-204ENST00000540738 BIN1O00499 593 aa16.12■□□□□ 0.17
COLCA1-204ENST00000540738 RXRAP19793 462 aa16.12■□□□□ 0.17
COLCA1-204ENST00000540738 RPS6KB1P23443 525 aa16.12■□□□□ 0.17
COLCA1-204ENST00000540738 SPAG5Q96R06 1193 aa16.12■□□□□ 0.17
COLCA1-204ENST00000540738 PLEKHF1Q96S99 279 aa16.12■□□□□ 0.17
COLCA1-204ENST00000540738 COA1Q9GZY4 146 aa16.12■□□□□ 0.17
COLCA1-204ENST00000540738 SWAP70Q9UH65 585 aa16.12■□□□□ 0.17
COLCA1-204ENST00000540738 PDE6AP16499 860 aa16.12■□□□□ 0.17
COLCA1-204ENST00000540738 CTNNA2P26232 953 aa16.12■□□□□ 0.17
COLCA1-204ENST00000540738 ICA1Q05084 483 aa16.12■□□□□ 0.17
COLCA1-204ENST00000540738 ATL3Q6DD88 541 aa16.12■□□□□ 0.17
COLCA1-204ENST00000540738 DBNDD1Q9H9R9 158 aa16.12■□□□□ 0.17
COLCA1-204ENST00000540738 ABT1Q9ULW3 272 aaKnown RBP16.12■□□□□ 0.17
COLCA1-204ENST00000540738 UNC13BO14795 1591 aa16.12■□□□□ 0.17
COLCA1-204ENST00000540738 CPSF1Q10570 1443 aaKnown RBP16.12■□□□□ 0.17
COLCA1-204ENST00000540738 PPM1FP49593 454 aaPredicted RBP16.11■□□□□ 0.17
COLCA1-204ENST00000540738 PLCD1P51178 756 aa16.11■□□□□ 0.17
COLCA1-204ENST00000540738 EN1Q05925 392 aaPredicted RBP16.11■□□□□ 0.17
COLCA1-204ENST00000540738 ZRSR2Q15696 482 aaKnown RBP16.11■□□□□ 0.17
COLCA1-204ENST00000540738 USP17L3A6NCW0 530 aa16.11■□□□□ 0.17
COLCA1-204ENST00000540738 USP17L4A6NCW7 530 aa16.11■□□□□ 0.17
COLCA1-204ENST00000540738 USP17L1Q7RTZ2 530 aa16.11■□□□□ 0.17
COLCA1-204ENST00000540738 IQUBQ8NA54 791 aa16.11■□□□□ 0.17
COLCA1-204ENST00000540738 HOMER2Q9NSB8 354 aa16.11■□□□□ 0.17
COLCA1-204ENST00000540738 SLC27A2O14975 620 aa16.11■□□□□ 0.17
COLCA1-204ENST00000540738 MCF2L2Q86YR7 1114 aa16.11■□□□□ 0.17
COLCA1-204ENST00000540738 CCDC65Q8IXS2 484 aa16.11■□□□□ 0.17
COLCA1-204ENST00000540738 MRPL11Q9Y3B7 192 aaKnown RBP16.11■□□□□ 0.17
COLCA1-204ENST00000540738 V9GY48 417 aaPredicted RBP16.11■□□□□ 0.17
COLCA1-204ENST00000540738 CLTCQ00610 1675 aaKnown RBP16.11■□□□□ 0.17
COLCA1-204ENST00000540738 MYO3BQ8WXR4 1341 aa16.11■□□□□ 0.17
COLCA1-204ENST00000540738 CFBP00751 764 aa16.11■□□□□ 0.17
COLCA1-204ENST00000540738 NONOQ15233 471 aaKnown RBP eCLIP16.11■□□□□ 0.17
COLCA1-204ENST00000540738 CDAN1Q8IWY9 1227 aa16.11■□□□□ 0.17
COLCA1-204ENST00000540738 CTAGE1Q96RT6 745 aa16.11■□□□□ 0.17
COLCA1-204ENST00000540738 ATP8A2Q9NTI2 1148 aa16.11■□□□□ 0.17
COLCA1-204ENST00000540738 CLTCL1P53675 1640 aa16.11■□□□□ 0.17
COLCA1-204ENST00000540738 CARMIL3Q8ND23 1372 aa16.11■□□□□ 0.17
COLCA1-204ENST00000540738 CTDSPL2Q05D32 466 aa16.11■□□□□ 0.17
COLCA1-204ENST00000540738 MSANTD4Q8NCY6 345 aa16.11■□□□□ 0.17
COLCA1-204ENST00000540738 BICDL2A1A5D9 508 aa16.1■□□□□ 0.17
COLCA1-204ENST00000540738 LPXNO60711 386 aa16.1■□□□□ 0.17
COLCA1-204ENST00000540738 RPL13P26373 211 aaKnown RBP16.1■□□□□ 0.17
COLCA1-204ENST00000540738 ABCB5Q2M3G0 1257 aa16.1■□□□□ 0.17
COLCA1-204ENST00000540738 LLPHQ9BRT6 129 aaKnown RBP16.1■□□□□ 0.17
COLCA1-204ENST00000540738 RAD17O75943 681 aa16.1■□□□□ 0.17
COLCA1-204ENST00000540738 PROSER3Q2NL68 480 aa16.1■□□□□ 0.17
COLCA1-204ENST00000540738 LRRC24Q50LG9 513 aa16.1■□□□□ 0.17
COLCA1-204ENST00000540738 HACE1Q8IYU2 909 aa16.1■□□□□ 0.17
COLCA1-204ENST00000540738 FAM177A1Q8N128 213 aaPredicted RBP16.1■□□□□ 0.17
COLCA1-204ENST00000540738 PPP1R2P41236 205 aa16.1■□□□□ 0.17
COLCA1-204ENST00000540738 LRRC45Q96CN5 670 aa16.1■□□□□ 0.17
COLCA1-204ENST00000540738 MMRN2Q9H8L6 949 aa16.1■□□□□ 0.17
COLCA1-204ENST00000540738 FAM212AQ96EL1 285 aa16.09■□□□□ 0.17
COLCA1-204ENST00000540738 CSRNP1Q96S65 589 aa16.09■□□□□ 0.17
COLCA1-204ENST00000540738 COL15A1P39059 1388 aa16.09■□□□□ 0.17
COLCA1-204ENST00000540738 USP31Q70CQ4 1352 aa16.09■□□□□ 0.17
COLCA1-204ENST00000540738 KIF2AO00139 706 aaPredicted RBP16.09■□□□□ 0.17
COLCA1-204ENST00000540738 N4BP3O15049 544 aa16.09■□□□□ 0.17
COLCA1-204ENST00000540738 SGSM2O43147 1006 aa16.09■□□□□ 0.17
COLCA1-204ENST00000540738 ERLIN1O75477 346 aa16.09■□□□□ 0.17
COLCA1-204ENST00000540738 MARCKSP29966 332 aaPredicted RBP16.09■□□□□ 0.17
COLCA1-204ENST00000540738 CCT6AP40227 531 aaKnown RBP16.09■□□□□ 0.17
COLCA1-204ENST00000540738 UBE3CQ15386 1083 aa16.09■□□□□ 0.17
COLCA1-204ENST00000540738 USH1GQ495M9 461 aa16.09■□□□□ 0.17
COLCA1-204ENST00000540738 DHX58Q96C10 678 aa16.09■□□□□ 0.17
COLCA1-204ENST00000540738 DHX36Q9H2U1 1008 aaKnown RBP16.09■□□□□ 0.17
COLCA1-204ENST00000540738 SV2BQ7L1I2 683 aa16.09■□□□□ 0.17
COLCA1-204ENST00000540738 GRPEL1Q9HAV7 217 aa16.09■□□□□ 0.17
COLCA1-204ENST00000540738 EXOC7Q9UPT5 735 aa16.09■□□□□ 0.17
COLCA1-204ENST00000540738 CAMSAP1Q5T5Y3 1602 aa16.09■□□□□ 0.17
COLCA1-204ENST00000540738 C21orf2O43822 256 aa16.08■□□□□ 0.17
COLCA1-204ENST00000540738 FAM227BQ96M60 508 aa16.08■□□□□ 0.17
COLCA1-204ENST00000540738 ARHGEF35A5YM69 484 aa16.08■□□□□ 0.17
COLCA1-204ENST00000540738 GBP2P32456 591 aaPredicted RBP16.08■□□□□ 0.17
COLCA1-204ENST00000540738 BSDC1Q9NW68 430 aaPredicted RBP16.08■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms