RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 UBR2Q8IWV8 1755 aa23.33■■□□□ 1.32
TMEM260-203ENST00000539559 RANBP6O60518 1105 aaKnown RBP23.32■■□□□ 1.32
TMEM260-203ENST00000539559 TEX35Q5T0J7 233 aa23.32■■□□□ 1.32
TMEM260-203ENST00000539559 TAF3Q5VWG9 929 aa23.32■■□□□ 1.32
TMEM260-203ENST00000539559 ZMYM6O95789 1325 aa23.32■■□□□ 1.32
TMEM260-203ENST00000539559 CBFA2T2O43439 604 aa23.32■■□□□ 1.32
TMEM260-203ENST00000539559 PRR29P0C7W0 189 aa23.32■■□□□ 1.32
TMEM260-203ENST00000539559 FMR1Q06787 632 aaKnown RBP eCLIP23.32■■□□□ 1.32
TMEM260-203ENST00000539559 TRDNQ13061 729 aa23.32■■□□□ 1.32
TMEM260-203ENST00000539559 KARSQ15046 597 aaKnown RBP23.32■■□□□ 1.32
TMEM260-203ENST00000539559 RESP18Q5W5W9 173 aa23.32■■□□□ 1.32
TMEM260-203ENST00000539559 CCDC82Q8N4S0 544 aa23.32■■□□□ 1.32
TMEM260-203ENST00000539559 ZSWIM4Q9H7M6 989 aa23.32■■□□□ 1.32
TMEM260-203ENST00000539559 TNS2Q63HR2 1409 aa23.31■■□□□ 1.32
TMEM260-203ENST00000539559 CCDC66A2RUB6 948 aa23.31■■□□□ 1.32
TMEM260-203ENST00000539559 CIAO1O76071 339 aa23.31■■□□□ 1.32
TMEM260-203ENST00000539559 MCAMP43121 646 aa23.31■■□□□ 1.32
TMEM260-203ENST00000539559 APOA5Q6Q788 366 aa23.31■■□□□ 1.32
TMEM260-203ENST00000539559 NFXL1Q6ZNB6 911 aa23.31■■□□□ 1.32
TMEM260-203ENST00000539559 KRBA2Q6ZNG9 492 aa23.31■■□□□ 1.32
TMEM260-203ENST00000539559 CCDC191Q8NCU4 936 aa23.31■■□□□ 1.32
TMEM260-203ENST00000539559 TIGD1Q96MW7 591 aa23.31■■□□□ 1.32
TMEM260-203ENST00000539559 IRX2Q9BZI1 471 aaPredicted RBP23.31■■□□□ 1.32
TMEM260-203ENST00000539559 PAPPAQ13219 1627 aa23.31■■□□□ 1.32
TMEM260-203ENST00000539559 SLC9C2Q5TAH2 1124 aa23.31■■□□□ 1.32
TMEM260-203ENST00000539559 NEK11Q8NG66 645 aa23.31■■□□□ 1.32
TMEM260-203ENST00000539559 ATP2B1P20020 1258 aa23.3■■□□□ 1.32
TMEM260-203ENST00000539559 CCDC102BQ68D86 513 aa23.3■■□□□ 1.32
TMEM260-203ENST00000539559 BAG1Q99933 345 aaPredicted RBP23.3■■□□□ 1.32
TMEM260-203ENST00000539559 ARGLU1Q9NWB6 273 aaPredicted RBP23.3■■□□□ 1.32
TMEM260-203ENST00000539559 IDH1O75874 414 aaKnown RBP23.3■■□□□ 1.32
TMEM260-203ENST00000539559 ZFYP08048 801 aaPredicted RBP23.3■■□□□ 1.32
TMEM260-203ENST00000539559 MTF1Q14872 753 aa23.3■■□□□ 1.32
TMEM260-203ENST00000539559 LRRFIP1Q32MZ4 808 aaKnown RBP23.3■■□□□ 1.32
TMEM260-203ENST00000539559 DISP2A7MBM2 1401 aa23.29■■□□□ 1.32
TMEM260-203ENST00000539559 SH2B2O14492 632 aaPredicted RBP23.29■■□□□ 1.32
TMEM260-203ENST00000539559 PPP6R2O75170 966 aa23.29■■□□□ 1.32
TMEM260-203ENST00000539559 CYP2C19P33261 490 aa23.29■■□□□ 1.32
TMEM260-203ENST00000539559 CMTR1Q8N1G2 835 aaKnown RBP23.29■■□□□ 1.32
TMEM260-203ENST00000539559 SLC26A6Q9BXS9 759 aa23.29■■□□□ 1.32
TMEM260-203ENST00000539559 C4AP0C0L4 1744 aa23.29■■□□□ 1.32
TMEM260-203ENST00000539559 C4BP0C0L5 1744 aa23.29■■□□□ 1.32
TMEM260-203ENST00000539559 TJP1Q07157 1748 aa23.29■■□□□ 1.32
TMEM260-203ENST00000539559 CCP110O43303 1012 aa23.29■■□□□ 1.32
TMEM260-203ENST00000539559 CDK11BP21127 795 aaKnown RBP23.29■■□□□ 1.32
TMEM260-203ENST00000539559 GUCY1A2P33402 732 aa23.29■■□□□ 1.32
TMEM260-203ENST00000539559 ST5P78524 1137 aa23.29■■□□□ 1.32
TMEM260-203ENST00000539559 GNL3Q9BVP2 549 aaKnown RBP eCLIP23.29■■□□□ 1.32
TMEM260-203ENST00000539559 KCNJ14Q9UNX9 436 aa23.29■■□□□ 1.32
TMEM260-203ENST00000539559 COL16A1Q07092 1604 aaPredicted RBP23.28■■□□□ 1.32
TMEM260-203ENST00000539559 A0A0U1RQJ8 604 aa23.28■■□□□ 1.32
TMEM260-203ENST00000539559 CASQ1P31415 396 aa23.28■■□□□ 1.32
TMEM260-203ENST00000539559 GYS2P54840 703 aa23.28■■□□□ 1.32
TMEM260-203ENST00000539559 JMYQ8N9B5 988 aa23.28■■□□□ 1.32
TMEM260-203ENST00000539559 PPIL4Q8WUA2 492 aaKnown RBP eCLIP23.28■■□□□ 1.32
TMEM260-203ENST00000539559 ATRIPQ8WXE1 791 aa23.28■■□□□ 1.32
TMEM260-203ENST00000539559 NFE2L3Q9Y4A8 694 aa23.28■■□□□ 1.32
TMEM260-203ENST00000539559 BTBD18B2RXH4 712 aa23.28■■□□□ 1.32
TMEM260-203ENST00000539559 IARSP41252 1262 aaKnown RBP23.28■■□□□ 1.32
TMEM260-203ENST00000539559 UBN2Q6ZU65 1347 aa23.28■■□□□ 1.32
TMEM260-203ENST00000539559 EFCAB8A8MWE9 144 aa23.27■■□□□ 1.32
TMEM260-203ENST00000539559 HNRNPH2P55795 449 aaKnown RBP23.27■■□□□ 1.32
TMEM260-203ENST00000539559 TC2NQ8N9U0 490 aa23.27■■□□□ 1.32
TMEM260-203ENST00000539559 SEC31BQ9NQW1 1179 aa23.27■■□□□ 1.32
TMEM260-203ENST00000539559 SAMSN1Q9NSI8 373 aaKnown RBP23.27■■□□□ 1.32
TMEM260-203ENST00000539559 FAM217BQ9NTX9 383 aaPredicted RBP23.27■■□□□ 1.32
TMEM260-203ENST00000539559 MAN1B1Q9UKM7 699 aa23.27■■□□□ 1.32
TMEM260-203ENST00000539559 GOLGA8AA7E2F4 631 aa23.27■■□□□ 1.32
TMEM260-203ENST00000539559 EXOC5O00471 708 aa23.27■■□□□ 1.32
TMEM260-203ENST00000539559 ARHGAP6O43182 974 aa23.27■■□□□ 1.32
TMEM260-203ENST00000539559 ZBTB43O43298 467 aa23.27■■□□□ 1.32
TMEM260-203ENST00000539559 ZSCAN12O43309 604 aa23.27■■□□□ 1.32
TMEM260-203ENST00000539559 TBC1D8O95759 1140 aa23.27■■□□□ 1.32
TMEM260-203ENST00000539559 IRX5P78411 483 aaPredicted RBP23.27■■□□□ 1.32
TMEM260-203ENST00000539559 PIGBQ92521 554 aa23.27■■□□□ 1.32
TMEM260-203ENST00000539559 PIH1D3Q9NQM4 214 aaKnown RBP23.27■■□□□ 1.32
TMEM260-203ENST00000539559 ZKSCAN7Q9P0L1 754 aaPredicted RBP23.27■■□□□ 1.32
TMEM260-203ENST00000539559 TOGARAM1Q9Y4F4 1720 aa23.27■■□□□ 1.32
TMEM260-203ENST00000539559 NTRK3Q16288 839 aa23.26■■□□□ 1.31
TMEM260-203ENST00000539559 SERTAD1Q9UHV2 236 aa23.26■■□□□ 1.31
TMEM260-203ENST00000539559 AKAP2Q9Y2D5 859 aa23.26■■□□□ 1.31
TMEM260-203ENST00000539559 POLR2DO15514 142 aaKnown RBP23.26■■□□□ 1.31
TMEM260-203ENST00000539559 CTDSPL2Q05D32 466 aa23.26■■□□□ 1.31
TMEM260-203ENST00000539559 PPP2R3AQ06190 1150 aa23.26■■□□□ 1.31
TMEM260-203ENST00000539559 TRIM29Q14134 588 aa23.26■■□□□ 1.31
TMEM260-203ENST00000539559 METTL24Q5JXM2 366 aa23.26■■□□□ 1.31
TMEM260-203ENST00000539559 DHX58Q96C10 678 aa23.26■■□□□ 1.31
TMEM260-203ENST00000539559 MED15Q96RN5 788 aa23.26■■□□□ 1.31
TMEM260-203ENST00000539559 ADAMTS2O95450 1211 aa23.26■■□□□ 1.31
TMEM260-203ENST00000539559 TUBB4AP04350 444 aa23.26■■□□□ 1.31
TMEM260-203ENST00000539559 USP49Q70CQ1 688 aa23.26■■□□□ 1.31
TMEM260-203ENST00000539559 ZKSCAN3Q9BRR0 538 aa23.26■■□□□ 1.31
TMEM260-203ENST00000539559 TMEM51Q9NW97 253 aa23.26■■□□□ 1.31
TMEM260-203ENST00000539559 CUTAO60888 179 aa23.25■■□□□ 1.31
TMEM260-203ENST00000539559 CC2D1AQ6P1N0 951 aaPredicted RBP23.25■■□□□ 1.31
TMEM260-203ENST00000539559 TEX13AQ9BXU3 409 aaPredicted RBP23.25■■□□□ 1.31
TMEM260-203ENST00000539559 ASAP1Q9ULH1 1129 aa23.25■■□□□ 1.31
TMEM260-203ENST00000539559 OAS2P29728 719 aaKnown RBP23.25■■□□□ 1.31
TMEM260-203ENST00000539559 ADD2P35612 726 aa23.25■■□□□ 1.31
TMEM260-203ENST00000539559 TOB1P50616 345 aaPredicted RBP23.25■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms