RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 IQCJ-SCHIP1C9J366 451 aaPredicted RBP5.46□□□□□ -1.54
SKA3-207ENST00000536239 HCLS1P14317 486 aaPredicted RBP5.46□□□□□ -1.54
SKA3-207ENST00000536239 ITIH2P19823 946 aa5.46□□□□□ -1.54
SKA3-207ENST00000536239 LRRC56Q8IYG6 542 aaPredicted RBP5.46□□□□□ -1.54
SKA3-207ENST00000536239 LIN37Q96GY3 246 aaPredicted RBP5.46□□□□□ -1.54
SKA3-207ENST00000536239 PRRG2O14669 202 aa5.45□□□□□ -1.54
SKA3-207ENST00000536239 NEFLP07196 543 aa5.45□□□□□ -1.54
SKA3-207ENST00000536239 RPS26P11Q5JNZ5 115 aaPredicted RBP5.45□□□□□ -1.54
SKA3-207ENST00000536239 ANKLE2Q86XL3 938 aa5.45□□□□□ -1.54
SKA3-207ENST00000536239 ASB11Q8WXH4 323 aa5.45□□□□□ -1.54
SKA3-207ENST00000536239 HEXIM2Q96MH2 286 aaKnown RBP5.45□□□□□ -1.54
SKA3-207ENST00000536239 KRT82Q9NSB4 513 aa5.45□□□□□ -1.54
SKA3-207ENST00000536239 CTNND2Q9UQB3 1225 aa5.45□□□□□ -1.54
SKA3-207ENST00000536239 NCANO14594 1321 aa5.45□□□□□ -1.54
SKA3-207ENST00000536239 GSTP1P09211 210 aaKnown RBP5.44□□□□□ -1.54
SKA3-207ENST00000536239 ZNF157P51786 506 aaPredicted RBP5.44□□□□□ -1.54
SKA3-207ENST00000536239 HNRNPUQ00839 825 aaKnown RBP eCLIP5.44□□□□□ -1.54
SKA3-207ENST00000536239 ZP2Q05996 745 aa5.44□□□□□ -1.54
SKA3-207ENST00000536239 IKZF1Q13422 519 aa5.44□□□□□ -1.54
SKA3-207ENST00000536239 FYB2Q5VWT5 728 aa5.44□□□□□ -1.54
SKA3-207ENST00000536239 SYDE1Q6ZW31 735 aaPredicted RBP5.44□□□□□ -1.54
SKA3-207ENST00000536239 FAM214BQ7L5A3 538 aa5.44□□□□□ -1.54
SKA3-207ENST00000536239 TOP6BLQ8N6T0 577 aa5.44□□□□□ -1.54
SKA3-207ENST00000536239 ABCB6Q9NP58 842 aa5.44□□□□□ -1.54
SKA3-207ENST00000536239 MTMR7Q9Y216 660 aa5.44□□□□□ -1.54
SKA3-207ENST00000536239 TMEM88BA6NKF7 163 aa5.43□□□□□ -1.54
SKA3-207ENST00000536239 B8ZZF3 427 aa5.43□□□□□ -1.54
SKA3-207ENST00000536239 NEFMP07197 916 aa5.43□□□□□ -1.54
SKA3-207ENST00000536239 ZSCAN22P10073 491 aaPredicted RBP5.43□□□□□ -1.54
SKA3-207ENST00000536239 AFMP43652 599 aa5.43□□□□□ -1.54
SKA3-207ENST00000536239 FAAP100Q0VG06 881 aa5.43□□□□□ -1.54
SKA3-207ENST00000536239 PRR23BQ6ZRT6 265 aa5.43□□□□□ -1.54
SKA3-207ENST00000536239 ISL2Q96A47 359 aa5.43□□□□□ -1.54
SKA3-207ENST00000536239 SSU72Q9NP77 194 aaKnown RBP5.43□□□□□ -1.54
SKA3-207ENST00000536239 NPHS2Q9NP85 383 aa5.43□□□□□ -1.54
SKA3-207ENST00000536239 ANO2Q9NQ90 1003 aa5.43□□□□□ -1.54
SKA3-207ENST00000536239 TMEM238LA0A1B0GVL6 79 aa5.42□□□□□ -1.54
SKA3-207ENST00000536239 IGF2BP3O00425 579 aaKnown RBP eCLIP5.42□□□□□ -1.54
SKA3-207ENST00000536239 CPNE3O75131 537 aaKnown RBP5.42□□□□□ -1.54
SKA3-207ENST00000536239 ABL1P00519 1130 aa5.42□□□□□ -1.54
SKA3-207ENST00000536239 GLI1P08151 1106 aa5.42□□□□□ -1.54
SKA3-207ENST00000536239 ECM1Q16610 540 aa5.42□□□□□ -1.54
SKA3-207ENST00000536239 PRPF40BQ6NWY9 871 aaKnown RBP5.42□□□□□ -1.54
SKA3-207ENST00000536239 PHF6Q8IWS0 365 aaKnown RBP eCLIP5.42□□□□□ -1.54
SKA3-207ENST00000536239 SPACA3Q8IXA5 215 aa5.42□□□□□ -1.54
SKA3-207ENST00000536239 CCDC97Q96F63 343 aaPredicted RBP5.42□□□□□ -1.54
SKA3-207ENST00000536239 LMCD1Q9NZU5 365 aa5.42□□□□□ -1.54
SKA3-207ENST00000536239 GTF2IRD1Q9UHL9 959 aa5.42□□□□□ -1.54
SKA3-207ENST00000536239 KRT1P04264 644 aa5.41□□□□□ -1.54
SKA3-207ENST00000536239 C1QTNF9P0C862 333 aa5.41□□□□□ -1.54
SKA3-207ENST00000536239 ZNF211Q13398 564 aaPredicted RBP5.41□□□□□ -1.54
SKA3-207ENST00000536239 PHLDB3Q6NSJ2 640 aa5.41□□□□□ -1.54
SKA3-207ENST00000536239 MPZL3Q6UWV2 235 aa5.41□□□□□ -1.54
SKA3-207ENST00000536239 TTLL10Q6ZVT0 673 aa5.41□□□□□ -1.54
SKA3-207ENST00000536239 PDZD3Q86UT5 571 aa5.41□□□□□ -1.54
SKA3-207ENST00000536239 RNF214Q8ND24 703 aa5.41□□□□□ -1.54
SKA3-207ENST00000536239 RAPGEFL1Q9UHV5 662 aa5.41□□□□□ -1.54
SKA3-207ENST00000536239 SERPINA10Q9UK55 444 aa5.41□□□□□ -1.54
SKA3-207ENST00000536239 ORC1Q13415 861 aa5.4□□□□□ -1.54
SKA3-207ENST00000536239 NKPD1Q17RQ9 610 aa5.4□□□□□ -1.54
SKA3-207ENST00000536239 ZC3H12AQ5D1E8 599 aaKnown RBP5.4□□□□□ -1.54
SKA3-207ENST00000536239 KCNB2Q92953 911 aa5.4□□□□□ -1.54
SKA3-207ENST00000536239 KIRREL1Q96J84 757 aa5.4□□□□□ -1.54
SKA3-207ENST00000536239 BRPF3Q9ULD4 1205 aa5.4□□□□□ -1.54
SKA3-207ENST00000536239 NFIBO00712 420 aa5.39□□□□□ -1.55
SKA3-207ENST00000536239 BUD31P41223 144 aaPredicted RBP5.39□□□□□ -1.55
SKA3-207ENST00000536239 ERVK-24P63145 666 aa5.39□□□□□ -1.55
SKA3-207ENST00000536239 TMEM67Q5HYA8 995 aa5.39□□□□□ -1.55
SKA3-207ENST00000536239 CYFIP1Q7L576 1253 aa5.39□□□□□ -1.55
SKA3-207ENST00000536239 AMIGO3Q86WK7 504 aa5.39□□□□□ -1.55
SKA3-207ENST00000536239 CCDC74AQ96AQ1 378 aa5.39□□□□□ -1.55
SKA3-207ENST00000536239 KRTAP9-3Q9BYQ3 159 aa5.39□□□□□ -1.55
SKA3-207ENST00000536239 TRAK1Q9UPV9 953 aa5.39□□□□□ -1.55
SKA3-207ENST00000536239 PITPNM2Q9BZ72 1349 aa5.39□□□□□ -1.55
SKA3-207ENST00000536239 GADD45BO75293 160 aaPredicted RBP5.38□□□□□ -1.55
SKA3-207ENST00000536239 CLCN7P51798 805 aa5.38□□□□□ -1.55
SKA3-207ENST00000536239 PPP2R3AQ06190 1150 aa5.38□□□□□ -1.55
SKA3-207ENST00000536239 FBXO15Q8NCQ5 510 aaPredicted RBP5.38□□□□□ -1.55
SKA3-207ENST00000536239 PRDM10Q9NQV6 1147 aa5.38□□□□□ -1.55
SKA3-207ENST00000536239 TMEM39AQ9NV64 488 aa5.38□□□□□ -1.55
SKA3-207ENST00000536239 GRM2Q14416 872 aa5.37□□□□□ -1.55
SKA3-207ENST00000536239 STK35Q8TDR2 534 aa5.37□□□□□ -1.55
SKA3-207ENST00000536239 C19orf73Q9NVV2 129 aa5.37□□□□□ -1.55
SKA3-207ENST00000536239 GPN3Q9UHW5 284 aaPredicted RBP5.37□□□□□ -1.55
SKA3-207ENST00000536239 GNAT3A8MTJ3 354 aa5.36□□□□□ -1.55
SKA3-207ENST00000536239 ICMTO60725 284 aa5.36□□□□□ -1.55
SKA3-207ENST00000536239 ARNTP27540 789 aa5.36□□□□□ -1.55
SKA3-207ENST00000536239 PDE3BQ13370 1112 aa5.36□□□□□ -1.55
SKA3-207ENST00000536239 DTHD1Q6ZMT9 781 aa5.36□□□□□ -1.55
SKA3-207ENST00000536239 FAM129BQ96TA1 746 aa5.36□□□□□ -1.55
SKA3-207ENST00000536239 DNAJC25Q9H1X3 360 aa5.36□□□□□ -1.55
SKA3-207ENST00000536239 CARS2Q9HA77 564 aaKnown RBP5.36□□□□□ -1.55
SKA3-207ENST00000536239 EGFL7Q9UHF1 273 aa5.36□□□□□ -1.55
SKA3-207ENST00000536239 NPIPB6E9PJ23 425 aa5.35□□□□□ -1.55
SKA3-207ENST00000536239 EIF1AYO14602 144 aaKnown RBP5.35□□□□□ -1.55
SKA3-207ENST00000536239 NDUFB5O43674 189 aa5.35□□□□□ -1.55
SKA3-207ENST00000536239 EOMESO95936 686 aa5.35□□□□□ -1.55
SKA3-207ENST00000536239 TMEM253P0C7T8 217 aa5.35□□□□□ -1.55
SKA3-207ENST00000536239 GDNFP39905 211 aa5.35□□□□□ -1.55
SKA3-207ENST00000536239 PPM1JQ5JR12 505 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms