RNA–Protein interactions for RNA: ENST00000532602.1

PCDHA9-202, Transcript of protocadherin alpha 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA9, Length 6,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA9-202ENST00000532602 CCDC117Q8IWD4 279 aaPredicted RBP16.66■□□□□ 0.26
PCDHA9-202ENST00000532602 NOD1Q9Y239 953 aa16.66■□□□□ 0.26
PCDHA9-202ENST00000532602 TACC1O75410 805 aa16.66■□□□□ 0.26
PCDHA9-202ENST00000532602 CRKLP46109 303 aaKnown RBP16.66■□□□□ 0.26
PCDHA9-202ENST00000532602 OTUD7BQ6GQQ9 843 aa16.66■□□□□ 0.26
PCDHA9-202ENST00000532602 CPXCR1Q8N123 301 aa16.66■□□□□ 0.26
PCDHA9-202ENST00000532602 CCDC77Q9BR77 488 aa16.66■□□□□ 0.26
PCDHA9-202ENST00000532602 GJC1P36383 396 aa16.66■□□□□ 0.26
PCDHA9-202ENST00000532602 BCAMP50895 628 aa16.66■□□□□ 0.26
PCDHA9-202ENST00000532602 MAATS1Q7Z4T9 603 aa16.66■□□□□ 0.26
PCDHA9-202ENST00000532602 CEP112Q8N8E3 955 aa16.66■□□□□ 0.26
PCDHA9-202ENST00000532602 PSMD1Q99460 953 aa16.66■□□□□ 0.26
PCDHA9-202ENST00000532602 MAEAQ7L5Y9 396 aa16.66■□□□□ 0.26
PCDHA9-202ENST00000532602 TMEM87BQ96K49 555 aa16.66■□□□□ 0.26
PCDHA9-202ENST00000532602 FAM135BQ49AJ0 1406 aa16.66■□□□□ 0.26
PCDHA9-202ENST00000532602 SPECC1LQ69YQ0 1117 aa16.66■□□□□ 0.26
PCDHA9-202ENST00000532602 HARSP12081 509 aaKnown RBP16.65■□□□□ 0.26
PCDHA9-202ENST00000532602 KRT83P78385 493 aa16.65■□□□□ 0.26
PCDHA9-202ENST00000532602 LRRC24Q50LG9 513 aa16.65■□□□□ 0.26
PCDHA9-202ENST00000532602 PHKBQ93100 1093 aa16.65■□□□□ 0.26
PCDHA9-202ENST00000532602 PROSER3Q2NL68 480 aa16.65■□□□□ 0.26
PCDHA9-202ENST00000532602 ATL3Q6DD88 541 aa16.65■□□□□ 0.26
PCDHA9-202ENST00000532602 PPM1EQ8WY54 764 aa16.65■□□□□ 0.26
PCDHA9-202ENST00000532602 PLCD3Q8N3E9 789 aa16.65■□□□□ 0.26
PCDHA9-202ENST00000532602 GPR162Q16538 588 aa16.65■□□□□ 0.26
PCDHA9-202ENST00000532602 USP40Q9NVE5 1235 aa16.65■□□□□ 0.26
PCDHA9-202ENST00000532602 A0A1B0GVL5 298 aa16.65■□□□□ 0.26
PCDHA9-202ENST00000532602 CCDC65Q8IXS2 484 aa16.65■□□□□ 0.26
PCDHA9-202ENST00000532602 IQCGQ9H095 443 aaKnown RBP16.65■□□□□ 0.26
PCDHA9-202ENST00000532602 TTF2Q9UNY4 1162 aaKnown RBP16.65■□□□□ 0.26
PCDHA9-202ENST00000532602 ARHGAP27Q6ZUM4 889 aa16.64■□□□□ 0.25
PCDHA9-202ENST00000532602 BEGAINQ9BUH8 593 aa16.64■□□□□ 0.25
PCDHA9-202ENST00000532602 GPHNQ9NQX3 736 aaPredicted RBP16.64■□□□□ 0.25
PCDHA9-202ENST00000532602 TCP10L2B9ZVM9 353 aa16.64■□□□□ 0.25
PCDHA9-202ENST00000532602 RPS8P62241 208 aaKnown RBP16.64■□□□□ 0.25
PCDHA9-202ENST00000532602 CTR9Q6PD62 1173 aa16.64■□□□□ 0.25
PCDHA9-202ENST00000532602 SNX21Q969T3 373 aa16.64■□□□□ 0.25
PCDHA9-202ENST00000532602 LOC102724428A0A0B4J2F2 783 aa16.64■□□□□ 0.25
PCDHA9-202ENST00000532602 SIK1P57059 783 aa16.64■□□□□ 0.25
PCDHA9-202ENST00000532602 NEK11Q8NG66 645 aa16.64■□□□□ 0.25
PCDHA9-202ENST00000532602 TBC1D22AQ8WUA7 517 aa16.64■□□□□ 0.25
PCDHA9-202ENST00000532602 KDRP35968 1356 aa16.63■□□□□ 0.25
PCDHA9-202ENST00000532602 NPC1L1Q9UHC9 1359 aa16.63■□□□□ 0.25
PCDHA9-202ENST00000532602 SORBS3O60504 671 aa16.63■□□□□ 0.25
PCDHA9-202ENST00000532602 PLCD1P51178 756 aa16.63■□□□□ 0.25
PCDHA9-202ENST00000532602 CMTR1Q8N1G2 835 aaKnown RBP16.63■□□□□ 0.25
PCDHA9-202ENST00000532602 FLAD1Q8NFF5 587 aa16.63■□□□□ 0.25
PCDHA9-202ENST00000532602 STK24Q9Y6E0 443 aa16.63■□□□□ 0.25
PCDHA9-202ENST00000532602 TUBB4AP04350 444 aa16.63■□□□□ 0.25
PCDHA9-202ENST00000532602 DLGAP5Q15398 846 aa16.63■□□□□ 0.25
PCDHA9-202ENST00000532602 MFSD14BQ5SR56 506 aa16.63■□□□□ 0.25
PCDHA9-202ENST00000532602 FAM107BQ9H098 131 aa16.63■□□□□ 0.25
PCDHA9-202ENST00000532602 SHROOM2Q13796 1616 aa16.63■□□□□ 0.25
PCDHA9-202ENST00000532602 EEF2P13639 858 aaKnown RBP16.63■□□□□ 0.25
PCDHA9-202ENST00000532602 HAUS3Q68CZ6 603 aa16.63■□□□□ 0.25
PCDHA9-202ENST00000532602 CCDC42Q96M95 316 aa16.63■□□□□ 0.25
PCDHA9-202ENST00000532602 SMTNP53814 917 aa16.62■□□□□ 0.25
PCDHA9-202ENST00000532602 KBTBD3Q8NAB2 608 aa16.62■□□□□ 0.25
PCDHA9-202ENST00000532602 PAXBP1Q9Y5B6 917 aa16.62■□□□□ 0.25
PCDHA9-202ENST00000532602 MAGI2Q86UL8 1455 aa16.62■□□□□ 0.25
PCDHA9-202ENST00000532602 MRPS9P82933 396 aaKnown RBP16.62■□□□□ 0.25
PCDHA9-202ENST00000532602 KIF5AQ12840 1032 aa16.62■□□□□ 0.25
PCDHA9-202ENST00000532602 RILPL1Q5EBL4 403 aa16.62■□□□□ 0.25
PCDHA9-202ENST00000532602 KRT86O43790 486 aa16.62■□□□□ 0.25
PCDHA9-202ENST00000532602 KIFC2Q96AC6 838 aa16.62■□□□□ 0.25
PCDHA9-202ENST00000532602 TRPC5Q9UL62 973 aaPredicted RBP16.62■□□□□ 0.25
PCDHA9-202ENST00000532602 CCT6AP40227 531 aaKnown RBP16.62■□□□□ 0.25
PCDHA9-202ENST00000532602 SDR42E1Q8WUS8 393 aa16.62■□□□□ 0.25
PCDHA9-202ENST00000532602 RNF216Q9NWF9 866 aaPredicted RBP16.62■□□□□ 0.25
PCDHA9-202ENST00000532602 KDM5CP41229 1560 aa16.62■□□□□ 0.25
PCDHA9-202ENST00000532602 SV2BQ7L1I2 683 aa16.62■□□□□ 0.25
PCDHA9-202ENST00000532602 KIAA1524Q8TCG1 905 aa16.62■□□□□ 0.25
PCDHA9-202ENST00000532602 GREM2Q9H772 168 aa16.62■□□□□ 0.25
PCDHA9-202ENST00000532602 INSRP06213 1382 aa16.62■□□□□ 0.25
PCDHA9-202ENST00000532602 TXKP42681 527 aa16.61■□□□□ 0.25
PCDHA9-202ENST00000532602 SLC8A3P57103 927 aa16.61■□□□□ 0.25
PCDHA9-202ENST00000532602 DCAF17Q5H9S7 520 aaPredicted RBP16.61■□□□□ 0.25
PCDHA9-202ENST00000532602 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.61■□□□□ 0.25
PCDHA9-202ENST00000532602 KIAA0825Q8IV33 1275 aa16.61■□□□□ 0.25
PCDHA9-202ENST00000532602 ZBTB38Q8NAP3 1195 aaPredicted RBP16.61■□□□□ 0.25
PCDHA9-202ENST00000532602 SEC62Q99442 399 aaKnown RBP16.61■□□□□ 0.25
PCDHA9-202ENST00000532602 CTAGE15A4D2H0 777 aa16.61■□□□□ 0.25
PCDHA9-202ENST00000532602 DEXIO95424 95 aa16.61■□□□□ 0.25
PCDHA9-202ENST00000532602 CTAGE8P0CG41 777 aa16.61■□□□□ 0.25
PCDHA9-202ENST00000532602 CTAGE6Q86UF2 777 aa16.61■□□□□ 0.25
PCDHA9-202ENST00000532602 CTAGE4Q8IX94 777 aa16.61■□□□□ 0.25
PCDHA9-202ENST00000532602 INTS4Q96HW7 963 aaKnown RBP16.61■□□□□ 0.25
PCDHA9-202ENST00000532602 ERICH4A6NGS2 130 aa16.61■□□□□ 0.25
PCDHA9-202ENST00000532602 UBXN1Q04323 297 aa16.61■□□□□ 0.25
PCDHA9-202ENST00000532602 CTNND2Q9UQB3 1225 aa16.61■□□□□ 0.25
PCDHA9-202ENST00000532602 FRMD4BQ9Y2L6 1034 aa16.61■□□□□ 0.25
PCDHA9-202ENST00000532602 FRMPD2Q68DX3 1309 aaPredicted RBP16.61■□□□□ 0.25
PCDHA9-202ENST00000532602 NCAPH2Q6IBW4 605 aa16.61■□□□□ 0.25
PCDHA9-202ENST00000532602 ERVK-7P63135 1459 aa16.6■□□□□ 0.25
PCDHA9-202ENST00000532602 A0A1W2PRG0 241 aa16.6■□□□□ 0.25
PCDHA9-202ENST00000532602 SLC1A4P43007 532 aa16.6■□□□□ 0.25
PCDHA9-202ENST00000532602 CHRNDQ07001 517 aa16.6■□□□□ 0.25
PCDHA9-202ENST00000532602 PPP2R5BQ15173 497 aa16.6■□□□□ 0.25
PCDHA9-202ENST00000532602 FNBP1Q96RU3 617 aa16.6■□□□□ 0.25
PCDHA9-202ENST00000532602 ANGEL1Q9UNK9 670 aaKnown RBP16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms