RNA–Protein interactions for RNA: ENST00000530660.5

PCF11-204, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 2

Gene PCF11, Length 3,309 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-204ENST00000530660 CDC27P30260 824 aa16.04■□□□□ 0.16
PCF11-204ENST00000530660 PIP4K2BP78356 416 aa16.04■□□□□ 0.16
PCF11-204ENST00000530660 CCDC40Q4G0X9 1142 aa16.04■□□□□ 0.16
PCF11-204ENST00000530660 TATDN2Q93075 761 aa16.04■□□□□ 0.16
PCF11-204ENST00000530660 ALDH8A1Q9H2A2 487 aaPredicted RBP16.04■□□□□ 0.16
PCF11-204ENST00000530660 AP1G2O75843 785 aa16.04■□□□□ 0.16
PCF11-204ENST00000530660 PDE4BQ07343 736 aa16.04■□□□□ 0.16
PCF11-204ENST00000530660 EVI5LQ96CN4 794 aa16.04■□□□□ 0.16
PCF11-204ENST00000530660 NAPGQ99747 312 aaPredicted RBP16.04■□□□□ 0.16
PCF11-204ENST00000530660 A0A1B0GUA9 196 aa16.03■□□□□ 0.16
PCF11-204ENST00000530660 AP1ARQ63HQ0 302 aa16.03■□□□□ 0.16
PCF11-204ENST00000530660 ACRBPQ8NEB7 543 aa16.03■□□□□ 0.16
PCF11-204ENST00000530660 SCLT1Q96NL6 688 aa16.03■□□□□ 0.16
PCF11-204ENST00000530660 NEK1Q96PY6 1258 aa16.03■□□□□ 0.16
PCF11-204ENST00000530660 RTEL1Q9NZ71 1219 aa16.03■□□□□ 0.16
PCF11-204ENST00000530660 GOLGA6BA6NDN3 693 aa16.03■□□□□ 0.16
PCF11-204ENST00000530660 WHAMMP3Q1A5X7 153 aa16.03■□□□□ 0.16
PCF11-204ENST00000530660 FAM228AQ86W67 206 aa16.03■□□□□ 0.16
PCF11-204ENST00000530660 PARD3BQ8TEW8 1205 aa16.03■□□□□ 0.16
PCF11-204ENST00000530660 SELENOOQ9BVL4 669 aa16.03■□□□□ 0.16
PCF11-204ENST00000530660 ZEB2O60315 1214 aa16.02■□□□□ 0.16
PCF11-204ENST00000530660 RASSF9O75901 435 aa16.02■□□□□ 0.16
PCF11-204ENST00000530660 B4GALNT4Q76KP1 1039 aa16.02■□□□□ 0.16
PCF11-204ENST00000530660 ARHGEF25Q86VW2 580 aa16.02■□□□□ 0.16
PCF11-204ENST00000530660 ANKRD18AQ8IVF6 992 aa16.02■□□□□ 0.16
PCF11-204ENST00000530660 CCDC13Q8IYE1 715 aa16.02■□□□□ 0.16
PCF11-204ENST00000530660 CLASRPQ8N2M8 674 aaKnown RBP16.02■□□□□ 0.16
PCF11-204ENST00000530660 TEX13AQ9BXU3 409 aaPredicted RBP16.02■□□□□ 0.16
PCF11-204ENST00000530660 SLC40A1Q9NP59 571 aa16.02■□□□□ 0.16
PCF11-204ENST00000530660 SPTLC2O15270 562 aa16.02■□□□□ 0.16
PCF11-204ENST00000530660 TUBBP07437 444 aa16.02■□□□□ 0.16
PCF11-204ENST00000530660 MARCKSP29966 332 aaPredicted RBP16.02■□□□□ 0.16
PCF11-204ENST00000530660 USP14P54578 494 aa16.02■□□□□ 0.16
PCF11-204ENST00000530660 TUBB4BP68371 445 aa16.02■□□□□ 0.16
PCF11-204ENST00000530660 NBPF10Q6P3W6 841 aaKnown RBP16.02■□□□□ 0.16
PCF11-204ENST00000530660 ARMC2Q8NEN0 867 aa16.02■□□□□ 0.16
PCF11-204ENST00000530660 THOC1Q96FV9 657 aaKnown RBP16.02■□□□□ 0.16
PCF11-204ENST00000530660 MROH7-TTC4A0A0A0MT08 1334 aa16.02■□□□□ 0.15
PCF11-204ENST00000530660 SMTNP53814 917 aa16.02■□□□□ 0.15
PCF11-204ENST00000530660 LONRF3Q496Y0 759 aa16.02■□□□□ 0.15
PCF11-204ENST00000530660 MYO6Q9UM54 1294 aa16.02■□□□□ 0.15
PCF11-204ENST00000530660 USP42Q9H9J4 1324 aaKnown RBP16.01■□□□□ 0.15
PCF11-204ENST00000530660 ANKRD33BA6NCL7 494 aa16.01■□□□□ 0.15
PCF11-204ENST00000530660 SSR1P43307 286 aaKnown RBP16.01■□□□□ 0.15
PCF11-204ENST00000530660 ATP1A2P50993 1020 aa16.01■□□□□ 0.15
PCF11-204ENST00000530660 ADCY2Q08462 1091 aa16.01■□□□□ 0.15
PCF11-204ENST00000530660 ZKSCAN8Q15776 578 aaPredicted RBP16.01■□□□□ 0.15
PCF11-204ENST00000530660 TRMT44Q8IYL2 757 aaKnown RBP16.01■□□□□ 0.15
PCF11-204ENST00000530660 NBPF3Q9H094 633 aa16.01■□□□□ 0.15
PCF11-204ENST00000530660 ETAA1Q9NY74 926 aa16.01■□□□□ 0.15
PCF11-204ENST00000530660 HDAC6Q9UBN7 1215 aa16.01■□□□□ 0.15
PCF11-204ENST00000530660 PA2G4Q9UQ80 394 aaKnown RBP16.01■□□□□ 0.15
PCF11-204ENST00000530660 ABCC6O95255 1503 aa16.01■□□□□ 0.15
PCF11-204ENST00000530660 PRR36Q9H6K5 1346 aa16.01■□□□□ 0.15
PCF11-204ENST00000530660 FAM208AQ9UK61 1670 aaKnown RBP16.01■□□□□ 0.15
PCF11-204ENST00000530660 ENC1O14682 589 aa16.01■□□□□ 0.15
PCF11-204ENST00000530660 CAND2O75155 1236 aa16.01■□□□□ 0.15
PCF11-204ENST00000530660 HDGFP51858 240 aaKnown RBP16.01■□□□□ 0.15
PCF11-204ENST00000530660 RBM5P52756 815 aaKnown RBP eCLIP16.01■□□□□ 0.152e-6■■□□□ 12.9
PCF11-204ENST00000530660 SNX1Q13596 522 aa16.01■□□□□ 0.15
PCF11-204ENST00000530660 HDGFL1Q5TGJ6 251 aa16.01■□□□□ 0.15
PCF11-204ENST00000530660 ATL3Q6DD88 541 aa16.01■□□□□ 0.15
PCF11-204ENST00000530660 SH3GL2Q99962 352 aa16.01■□□□□ 0.15
PCF11-204ENST00000530660 IRAK4Q9NWZ3 460 aa16.01■□□□□ 0.15
PCF11-204ENST00000530660 SF3B2Q13435 895 aaKnown RBP16.01■□□□□ 0.15
PCF11-204ENST00000530660 ZBTB10Q96DT7 871 aa16.01■□□□□ 0.15
PCF11-204ENST00000530660 C19orf44Q9H6X5 657 aa16.01■□□□□ 0.15
PCF11-204ENST00000530660 VCPKMTQ9H867 229 aa16.01■□□□□ 0.15
PCF11-204ENST00000530660 GJB4Q9NTQ9 266 aa16.01■□□□□ 0.15
PCF11-204ENST00000530660 CRYBG1Q9Y4K1 1723 aa16.01■□□□□ 0.15
PCF11-204ENST00000530660 PEAK1Q9H792 1746 aa16■□□□□ 0.15
PCF11-204ENST00000530660 TMCO5BA8MYB1 307 aa16■□□□□ 0.15
PCF11-204ENST00000530660 EIF2S2P20042 333 aaKnown RBP16■□□□□ 0.15
PCF11-204ENST00000530660 BMP6P22004 513 aa16■□□□□ 0.15
PCF11-204ENST00000530660 CDR1P51861 262 aa16■□□□□ 0.15
PCF11-204ENST00000530660 TAF7Q15545 349 aaPredicted RBP16■□□□□ 0.15
PCF11-204ENST00000530660 ARMC3Q5W041 872 aa16■□□□□ 0.15
PCF11-204ENST00000530660 OLFM4Q6UX06 510 aa16■□□□□ 0.15
PCF11-204ENST00000530660 FSD1Q9BTV5 496 aa16■□□□□ 0.15
PCF11-204ENST00000530660 SPATS2LQ9NUQ6 558 aaKnown RBP16■□□□□ 0.15
PCF11-204ENST00000530660 C3P01024 1663 aa16■□□□□ 0.15
PCF11-204ENST00000530660 AKR1B15C9JRZ8 316 aaPredicted RBP16■□□□□ 0.15
PCF11-204ENST00000530660 SRGAP2O75044 1071 aa16■□□□□ 0.15
PCF11-204ENST00000530660 ARHGAP25P42331 645 aa16■□□□□ 0.15
PCF11-204ENST00000530660 TUBE1Q9UJT0 475 aa16■□□□□ 0.15
PCF11-204ENST00000530660 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16■□□□□ 0.15
PCF11-204ENST00000530660 CHGBP05060 677 aa15.99■□□□□ 0.15
PCF11-204ENST00000530660 IFT88Q13099 833 aa15.99■□□□□ 0.15
PCF11-204ENST00000530660 SNCBQ16143 134 aa15.99■□□□□ 0.15
PCF11-204ENST00000530660 AACSQ86V21 672 aa15.99■□□□□ 0.15
PCF11-204ENST00000530660 FOXP4Q8IVH2 680 aaPredicted RBP15.99■□□□□ 0.15
PCF11-204ENST00000530660 SPDL1Q96EA4 605 aa15.99■□□□□ 0.15
PCF11-204ENST00000530660 CAPZA3Q96KX2 299 aa15.99■□□□□ 0.15
PCF11-204ENST00000530660 MMS19Q96T76 1030 aa15.99■□□□□ 0.15
PCF11-204ENST00000530660 TAOK2Q9UL54 1235 aa15.99■□□□□ 0.15
PCF11-204ENST00000530660 MON2Q7Z3U7 1717 aa15.99■□□□□ 0.15
PCF11-204ENST00000530660 ENO4A6NNW6 628 aa15.99■□□□□ 0.15
PCF11-204ENST00000530660 TEX33O43247 280 aa15.99■□□□□ 0.15
PCF11-204ENST00000530660 GBP2P32456 591 aaPredicted RBP15.99■□□□□ 0.15
PCF11-204ENST00000530660 RBL2Q08999 1139 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms