RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 C6orf229H3BNL8 230 aa24.26■■□□□ 1.47
VPS28-209ENST00000528142 FIBPO43427 364 aa24.26■■□□□ 1.47
VPS28-209ENST00000528142 GSTO1P78417 241 aa24.26■■□□□ 1.47
VPS28-209ENST00000528142 GAS2L3Q86XJ1 694 aa24.26■■□□□ 1.47
VPS28-209ENST00000528142 RBM27Q9P2N5 1060 aaKnown RBP24.26■■□□□ 1.47
VPS28-209ENST00000528142 CYP2D7A0A087X1C5 515 aa24.26■■□□□ 1.47
VPS28-209ENST00000528142 USP17L12C9JPN9 530 aa24.26■■□□□ 1.47
VPS28-209ENST00000528142 USP17L21D6R901 530 aa24.26■■□□□ 1.47
VPS28-209ENST00000528142 L1TD1Q5T7N2 865 aaKnown RBP24.26■■□□□ 1.47
VPS28-209ENST00000528142 FAM173BQ6P4H8 233 aa24.26■■□□□ 1.47
VPS28-209ENST00000528142 TOMM22Q9NS69 142 aa24.26■■□□□ 1.47
VPS28-209ENST00000528142 TMEM63CQ9P1W3 806 aa24.26■■□□□ 1.47
VPS28-209ENST00000528142 PPFIA3O75145 1194 aa24.25■■□□□ 1.47
VPS28-209ENST00000528142 PCP11498 1178 aaKnown RBP24.25■■□□□ 1.47
VPS28-209ENST00000528142 METAP2P50579 478 aaKnown RBP eCLIP24.25■■□□□ 1.47
VPS28-209ENST00000528142 ZNF445P59923 1031 aa24.25■■□□□ 1.47
VPS28-209ENST00000528142 KRT85P78386 507 aa24.25■■□□□ 1.47
VPS28-209ENST00000528142 CSPP1Q1MSJ5 1256 aa24.25■■□□□ 1.47
VPS28-209ENST00000528142 ZSCAN23Q3MJ62 389 aa24.25■■□□□ 1.47
VPS28-209ENST00000528142 STK11IPQ8N1F8 1099 aa24.25■■□□□ 1.47
VPS28-209ENST00000528142 ZSCAN16Q9H4T2 348 aaPredicted RBP24.25■■□□□ 1.47
VPS28-209ENST00000528142 KIAA1551Q9HCM1 1747 aa24.24■■□□□ 1.47
VPS28-209ENST00000528142 PPP4CP60510 307 aa24.24■■□□□ 1.47
VPS28-209ENST00000528142 SBK1Q52WX2 424 aa24.24■■□□□ 1.47
VPS28-209ENST00000528142 NFXL1Q6ZNB6 911 aa24.24■■□□□ 1.47
VPS28-209ENST00000528142 CPLX1O14810 134 aa24.24■■□□□ 1.47
VPS28-209ENST00000528142 ZBTB43O43298 467 aa24.24■■□□□ 1.47
VPS28-209ENST00000528142 UBE2HP62256 183 aa24.24■■□□□ 1.47
VPS28-209ENST00000528142 DIXDC1Q155Q3 683 aa24.24■■□□□ 1.47
VPS28-209ENST00000528142 ESR2Q92731 530 aa24.24■■□□□ 1.47
VPS28-209ENST00000528142 FAM217BQ9NTX9 383 aaPredicted RBP24.24■■□□□ 1.47
VPS28-209ENST00000528142 MKRN1Q9UHC7 482 aaKnown RBP24.24■■□□□ 1.47
VPS28-209ENST00000528142 DUOX1Q9NRD9 1551 aa24.23■■□□□ 1.47
VPS28-209ENST00000528142 CHD4Q14839 1912 aa24.23■■□□□ 1.47
VPS28-209ENST00000528142 LDHCP07864 332 aa24.23■■□□□ 1.47
VPS28-209ENST00000528142 CDC27P30260 824 aa24.23■■□□□ 1.47
VPS28-209ENST00000528142 ADD1P35611 737 aaKnown RBP24.23■■□□□ 1.47
VPS28-209ENST00000528142 SART3Q15020 963 aaKnown RBP24.23■■□□□ 1.47
VPS28-209ENST00000528142 CCDC88AQ3V6T2 1871 aa24.23■■□□□ 1.47
VPS28-209ENST00000528142 OLFM4Q6UX06 510 aa24.23■■□□□ 1.47
VPS28-209ENST00000528142 FAM205AQ6ZU69 1335 aa24.23■■□□□ 1.47
VPS28-209ENST00000528142 MPNDQ8N594 471 aa24.23■■□□□ 1.47
VPS28-209ENST00000528142 TCHHQ07283 1943 aa24.22■■□□□ 1.47
VPS28-209ENST00000528142 NID2Q14112 1375 aa24.22■■□□□ 1.47
VPS28-209ENST00000528142 R3HDM1Q15032 1099 aaKnown RBP24.22■■□□□ 1.47
VPS28-209ENST00000528142 TMTC2Q8N394 836 aa24.22■■□□□ 1.47
VPS28-209ENST00000528142 SLC16A10Q8TF71 515 aa24.22■■□□□ 1.47
VPS28-209ENST00000528142 ZKSCAN3Q9BRR0 538 aa24.22■■□□□ 1.47
VPS28-209ENST00000528142 COA1Q9GZY4 146 aa24.22■■□□□ 1.47
VPS28-209ENST00000528142 ORC3Q9UBD5 711 aaPredicted RBP24.22■■□□□ 1.47
VPS28-209ENST00000528142 ARPP21Q9UBL0 812 aaPredicted RBP24.22■■□□□ 1.47
VPS28-209ENST00000528142 DDX52Q9Y2R4 599 aaKnown RBP eCLIP24.22■■□□□ 1.471e-7■■■■□ 24.2
VPS28-209ENST00000528142 SLC12A7Q9Y666 1083 aa24.22■■□□□ 1.47
VPS28-209ENST00000528142 MROH7-TTC4A0A0A0MT08 1334 aa24.22■■□□□ 1.47
VPS28-209ENST00000528142 CCDC69A6NI79 296 aa24.21■■□□□ 1.47
VPS28-209ENST00000528142 ZBTB7AO95365 584 aa24.21■■□□□ 1.47
VPS28-209ENST00000528142 RXRAP19793 462 aa24.21■■□□□ 1.47
VPS28-209ENST00000528142 WTAPQ15007 396 aa24.21■■□□□ 1.47
VPS28-209ENST00000528142 MICU3Q86XE3 530 aa24.21■■□□□ 1.47
VPS28-209ENST00000528142 TBC1D22AQ8WUA7 517 aa24.21■■□□□ 1.47
VPS28-209ENST00000528142 ELP1O95163 1332 aa24.21■■□□□ 1.47
VPS28-209ENST00000528142 BAG3O95817 575 aa24.21■■□□□ 1.47
VPS28-209ENST00000528142 FOSBP53539 338 aa24.21■■□□□ 1.47
VPS28-209ENST00000528142 SEC23AQ15436 765 aa24.21■■□□□ 1.47
VPS28-209ENST00000528142 NTRK3Q16288 839 aa24.21■■□□□ 1.47
VPS28-209ENST00000528142 ILDR2Q71H61 639 aa24.21■■□□□ 1.47
VPS28-209ENST00000528142 TTC6Q86TZ1 520 aa24.21■■□□□ 1.47
VPS28-209ENST00000528142 SH3RF3Q8TEJ3 882 aaPredicted RBP24.21■■□□□ 1.47
VPS28-209ENST00000528142 RTFDC1Q9BY42 306 aaPredicted RBP24.21■■□□□ 1.47
VPS28-209ENST00000528142 EVX2Q03828 476 aa24.2■■□□□ 1.46
VPS28-209ENST00000528142 MFSD14BQ5SR56 506 aa24.2■■□□□ 1.46
VPS28-209ENST00000528142 C2CD5Q86YS7 1000 aa24.2■■□□□ 1.46
VPS28-209ENST00000528142 RGS22Q8NE09 1264 aa24.2■■□□□ 1.46
VPS28-209ENST00000528142 MYL10Q9BUA6 226 aa24.2■■□□□ 1.46
VPS28-209ENST00000528142 ERICH2A1L162 156 aa24.19■■□□□ 1.46
VPS28-209ENST00000528142 GOLGA8AA7E2F4 631 aa24.19■■□□□ 1.46
VPS28-209ENST00000528142 RIMBP2O15034 1052 aa24.19■■□□□ 1.46
VPS28-209ENST00000528142 ORC4O43929 436 aa24.19■■□□□ 1.46
VPS28-209ENST00000528142 CDKL5O76039 1030 aa24.19■■□□□ 1.46
VPS28-209ENST00000528142 STYK1Q6J9G0 422 aa24.19■■□□□ 1.46
VPS28-209ENST00000528142 DPP8Q6V1X1 898 aaPredicted RBP24.19■■□□□ 1.46
VPS28-209ENST00000528142 FAM163AQ96GL9 167 aaPredicted RBP24.19■■□□□ 1.46
VPS28-209ENST00000528142 UBAC1Q9BSL1 405 aa24.19■■□□□ 1.46
VPS28-209ENST00000528142 SCAND2PQ9GZW5 306 aaPredicted RBP24.19■■□□□ 1.46
VPS28-209ENST00000528142 CYP2D6P10635 497 aa24.19■■□□□ 1.46
VPS28-209ENST00000528142 XRCC6P12956 609 aaKnown RBP eCLIP24.19■■□□□ 1.467e-6■□□□□ 8.8
VPS28-209ENST00000528142 CHRNA5P30532 468 aa24.19■■□□□ 1.46
VPS28-209ENST00000528142 MRE11P49959 708 aa24.19■■□□□ 1.46
VPS28-209ENST00000528142 RCAN1P53805 252 aa24.19■■□□□ 1.46
VPS28-209ENST00000528142 ZNF622Q969S3 477 aaKnown RBP eCLIP24.19■■□□□ 1.462e-11■■■■■ 40.7
VPS28-209ENST00000528142 ZC3H12CQ9C0D7 883 aaKnown RBP24.19■■□□□ 1.46
VPS28-209ENST00000528142 TFIP11Q9UBB9 837 aaKnown RBP24.19■■□□□ 1.46
VPS28-209ENST00000528142 BAZ2AQ9UIF9 1905 aaKnown RBP24.18■■□□□ 1.46
VPS28-209ENST00000528142 GPR75-ASB3A0A0A6YYF3 556 aa24.18■■□□□ 1.46
VPS28-209ENST00000528142 CPLX2Q6PUV4 134 aaKnown RBP24.18■■□□□ 1.46
VPS28-209ENST00000528142 SYNE3Q6ZMZ3 975 aa24.18■■□□□ 1.46
VPS28-209ENST00000528142 CERS3Q8IU89 383 aa24.18■■□□□ 1.46
VPS28-209ENST00000528142 FBXO18Q8NFZ0 1043 aa24.18■■□□□ 1.46
VPS28-209ENST00000528142 C8orf76Q96K31 380 aa24.18■■□□□ 1.46
VPS28-209ENST00000528142 C10orf71Q711Q0 1435 aa24.18■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 594.7 ms