RNA–Protein interactions for RNA: ENST00000526313.5

USH1C-204, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best)

Gene USH1C, Length 2,149 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-204ENST00000526313 CCDC69A6NI79 296 aa18.56■□□□□ 0.56
USH1C-204ENST00000526313 NR1I2O75469 434 aa18.56■□□□□ 0.56
USH1C-204ENST00000526313 SERPINB2P05120 415 aa18.56■□□□□ 0.56
USH1C-204ENST00000526313 RXRAP19793 462 aa18.56■□□□□ 0.56
USH1C-204ENST00000526313 HMGB2P26583 209 aaKnown RBP18.56■□□□□ 0.56
USH1C-204ENST00000526313 KIF23Q02241 960 aaPredicted RBP18.56■□□□□ 0.56
USH1C-204ENST00000526313 SEC23AQ15436 765 aa18.56■□□□□ 0.56
USH1C-204ENST00000526313 MAP3K11Q16584 847 aa18.56■□□□□ 0.56
USH1C-204ENST00000526313 RANBP6O60518 1105 aaKnown RBP18.56■□□□□ 0.56
USH1C-204ENST00000526313 IFNAR1P17181 557 aa18.56■□□□□ 0.56
USH1C-204ENST00000526313 WTAPQ15007 396 aa18.56■□□□□ 0.56
USH1C-204ENST00000526313 SPTY2D1Q68D10 685 aaPredicted RBP18.56■□□□□ 0.56
USH1C-204ENST00000526313 PROM2Q8N271 834 aa18.56■□□□□ 0.56
USH1C-204ENST00000526313 CCDC88AQ3V6T2 1871 aa18.56■□□□□ 0.56
USH1C-204ENST00000526313 KLRG2A4D1S0 409 aaPredicted RBP18.55■□□□□ 0.56
USH1C-204ENST00000526313 MINDY4BA8MYZ0 360 aa18.55■□□□□ 0.56
USH1C-204ENST00000526313 PRDX5P30044 214 aa18.55■□□□□ 0.56
USH1C-204ENST00000526313 RRP12Q5JTH9 1297 aaKnown RBP18.55■□□□□ 0.56
USH1C-204ENST00000526313 CTR9Q6PD62 1173 aa18.55■□□□□ 0.56
USH1C-204ENST00000526313 ESR2Q92731 530 aa18.55■□□□□ 0.56
USH1C-204ENST00000526313 ALG1Q9BT22 464 aa18.55■□□□□ 0.56
USH1C-204ENST00000526313 GJB4Q9NTQ9 266 aa18.55■□□□□ 0.56
USH1C-204ENST00000526313 POLR3EQ9NVU0 708 aa18.55■□□□□ 0.56
USH1C-204ENST00000526313 ESPNB1AK53 854 aa18.55■□□□□ 0.56
USH1C-204ENST00000526313 KIF28PB7ZC32 967 aa18.55■□□□□ 0.56
USH1C-204ENST00000526313 TRIM37O94972 964 aa18.55■□□□□ 0.56
USH1C-204ENST00000526313 CCDC192P0DO97 292 aa18.55■□□□□ 0.56
USH1C-204ENST00000526313 HOXA10P31260 410 aaPredicted RBP18.55■□□□□ 0.56
USH1C-204ENST00000526313 IARSP41252 1262 aaKnown RBP18.55■□□□□ 0.56
USH1C-204ENST00000526313 CEBPZQ03701 1054 aaKnown RBP18.55■□□□□ 0.56
USH1C-204ENST00000526313 MYSM1Q5VVJ2 828 aa18.55■□□□□ 0.56
USH1C-204ENST00000526313 SYNE3Q6ZMZ3 975 aa18.55■□□□□ 0.56
USH1C-204ENST00000526313 BICD2Q8TD16 824 aa18.55■□□□□ 0.56
USH1C-204ENST00000526313 ATP8A2Q9NTI2 1148 aa18.55■□□□□ 0.56
USH1C-204ENST00000526313 ANKIB1Q9P2G1 1089 aa18.55■□□□□ 0.56
USH1C-204ENST00000526313 DUOX1Q9NRD9 1551 aa18.54■□□□□ 0.56
USH1C-204ENST00000526313 BAZ2AQ9UIF9 1905 aaKnown RBP18.54■□□□□ 0.56
USH1C-204ENST00000526313 SMIM22K7EJ46 135 aa18.54■□□□□ 0.56
USH1C-204ENST00000526313 FMNL1O95466 1100 aaPredicted RBP18.54■□□□□ 0.56
USH1C-204ENST00000526313 YEATS4O95619 227 aa18.54■□□□□ 0.56
USH1C-204ENST00000526313 LINC00301Q8NCQ3 95 aa18.54■□□□□ 0.56
USH1C-204ENST00000526313 WDR66Q8TBY9 1149 aa18.54■□□□□ 0.56
USH1C-204ENST00000526313 PHKBQ93100 1093 aa18.54■□□□□ 0.56
USH1C-204ENST00000526313 AIFM3Q96NN9 605 aa18.54■□□□□ 0.56
USH1C-204ENST00000526313 MYL10Q9BUA6 226 aa18.54■□□□□ 0.56
USH1C-204ENST00000526313 TNMDQ9H2S6 317 aa18.54■□□□□ 0.56
USH1C-204ENST00000526313 ECM29Q5VYK3 1845 aa18.54■□□□□ 0.56
USH1C-204ENST00000526313 ERICH2A1L162 156 aa18.53■□□□□ 0.56
USH1C-204ENST00000526313 ST5P78524 1137 aa18.53■□□□□ 0.56
USH1C-204ENST00000526313 CHAF1AQ13111 956 aaPredicted RBP18.53■□□□□ 0.56
USH1C-204ENST00000526313 SBK1Q52WX2 424 aa18.53■□□□□ 0.56
USH1C-204ENST00000526313 KRT40Q6A162 431 aa18.53■□□□□ 0.56
USH1C-204ENST00000526313 SLC51AQ86UW1 340 aa18.53■□□□□ 0.56
USH1C-204ENST00000526313 ENGASEQ8NFI3 743 aa18.53■□□□□ 0.56
USH1C-204ENST00000526313 RPGRQ92834 1020 aaKnown RBP18.53■□□□□ 0.56
USH1C-204ENST00000526313 ZKSCAN3Q9BRR0 538 aa18.53■□□□□ 0.56
USH1C-204ENST00000526313 CRNKL1Q9BZJ0 848 aaKnown RBP18.53■□□□□ 0.56
USH1C-204ENST00000526313 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.53■□□□□ 0.56
USH1C-204ENST00000526313 DDR1Q08345 913 aa18.53■□□□□ 0.56
USH1C-204ENST00000526313 SNW1Q13573 536 aaKnown RBP18.53■□□□□ 0.56
USH1C-204ENST00000526313 PPP2R5BQ15173 497 aa18.53■□□□□ 0.56
USH1C-204ENST00000526313 DCP1AQ9NPI6 582 aaPredicted RBP18.53■□□□□ 0.56
USH1C-204ENST00000526313 TOMM22Q9NS69 142 aa18.53■□□□□ 0.56
USH1C-204ENST00000526313 A0A1W2PQ27 194 aa18.52■□□□□ 0.56
USH1C-204ENST00000526313 A0A1W2PQ64 194 aa18.52■□□□□ 0.56
USH1C-204ENST00000526313 A0A1W2PQD8 194 aa18.52■□□□□ 0.56
USH1C-204ENST00000526313 ORC4O43929 436 aa18.52■□□□□ 0.56
USH1C-204ENST00000526313 CLCN1P35523 988 aa18.52■□□□□ 0.56
USH1C-204ENST00000526313 SSRP1Q08945 709 aaKnown RBP18.52■□□□□ 0.56
USH1C-204ENST00000526313 CAMK4Q16566 473 aa18.52■□□□□ 0.56
USH1C-204ENST00000526313 TXNRD1Q16881 649 aa18.52■□□□□ 0.56
USH1C-204ENST00000526313 ADALQ6DHV7 355 aa18.52■□□□□ 0.56
USH1C-204ENST00000526313 NBPF11Q86T75 865 aa18.52■□□□□ 0.56
USH1C-204ENST00000526313 CCAR1Q8IX12 1150 aaKnown RBP18.52■□□□□ 0.56
USH1C-204ENST00000526313 CCDC144CPQ8IYA2 1237 aa18.52■□□□□ 0.56
USH1C-204ENST00000526313 AATFQ9NY61 560 aaKnown RBP eCLIP18.52■□□□□ 0.56
USH1C-204ENST00000526313 CYP2D7A0A087X1C5 515 aa18.52■□□□□ 0.55
USH1C-204ENST00000526313 USP17L12C9JPN9 530 aa18.52■□□□□ 0.55
USH1C-204ENST00000526313 USP17L21D6R901 530 aa18.52■□□□□ 0.55
USH1C-204ENST00000526313 POLRMTO00411 1230 aaKnown RBP18.52■□□□□ 0.55
USH1C-204ENST00000526313 BBOX1O75936 387 aa18.52■□□□□ 0.55
USH1C-204ENST00000526313 POLR3DP05423 398 aaPredicted RBP18.52■□□□□ 0.55
USH1C-204ENST00000526313 U2AF2P26368 475 aaKnown RBP eCLIP18.52■□□□□ 0.55
USH1C-204ENST00000526313 GPSM2P81274 684 aa18.52■□□□□ 0.55
USH1C-204ENST00000526313 RTN1Q16799 776 aa18.52■□□□□ 0.55
USH1C-204ENST00000526313 ZNF654Q8IZM8 581 aa18.52■□□□□ 0.55
USH1C-204ENST00000526313 RBM17Q96I25 401 aaKnown RBP18.52■□□□□ 0.55
USH1C-204ENST00000526313 UBAC1Q9BSL1 405 aa18.52■□□□□ 0.55
USH1C-204ENST00000526313 GOLPH3LQ9H4A5 285 aa18.52■□□□□ 0.55
USH1C-204ENST00000526313 PCDHA7Q9UN72 937 aa18.52■□□□□ 0.55
USH1C-204ENST00000526313 CLIC4Q9Y696 253 aa18.52■□□□□ 0.55
USH1C-204ENST00000526313 MYH2Q9UKX2 1941 aa18.51■□□□□ 0.55
USH1C-204ENST00000526313 DLEC1Q9Y238 1755 aa18.51■□□□□ 0.55
USH1C-204ENST00000526313 CCDC196A0A1B0GTZ2 297 aa18.51■□□□□ 0.55
USH1C-204ENST00000526313 TYRO3Q06418 890 aa18.51■□□□□ 0.55
USH1C-204ENST00000526313 ZNF804AQ7Z570 1209 aa18.51■□□□□ 0.55
USH1C-204ENST00000526313 FANCBQ8NB91 859 aa18.51■□□□□ 0.55
USH1C-204ENST00000526313 KCNG4Q8TDN1 519 aa18.51■□□□□ 0.55
USH1C-204ENST00000526313 WASF1Q92558 559 aa18.51■□□□□ 0.55
USH1C-204ENST00000526313 CRAMP1Q96RY5 1269 aa18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms