RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 ANKRD13CQ8N6S4 541 aa8.18□□□□□ -1.1
CD44-221ENST00000526000 U2AF1L4Q8WU68 220 aaKnown RBP8.18□□□□□ -1.1
CD44-221ENST00000526000 DEFB118Q96PH6 123 aa8.18□□□□□ -1.1
CD44-221ENST00000526000 ZCCHC17Q9NP64 241 aaKnown RBP8.18□□□□□ -1.1
CD44-221ENST00000526000 STAP2Q9UGK3 403 aa8.18□□□□□ -1.1
CD44-221ENST00000526000 DENND2AQ9ULE3 1009 aa8.18□□□□□ -1.1
CD44-221ENST00000526000 AFG3L2Q9Y4W6 797 aa8.18□□□□□ -1.1
CD44-221ENST00000526000 PTPRCP08575 1304 aa8.18□□□□□ -1.1
CD44-221ENST00000526000 ADGRA2Q96PE1 1338 aa8.18□□□□□ -1.1
CD44-221ENST00000526000 ZSWIM8A7E2V4 1837 aa8.17□□□□□ -1.1
CD44-221ENST00000526000 TRIOBPQ9H2D6 2365 aa8.17□□□□□ -1.1
CD44-221ENST00000526000 E9PSI1 815 aa8.17□□□□□ -1.1
CD44-221ENST00000526000 TNPO2O14787 897 aaKnown RBP8.17□□□□□ -1.1
CD44-221ENST00000526000 FARP2O94887 1054 aaPredicted RBP8.17□□□□□ -1.1
CD44-221ENST00000526000 SGPL1O95470 568 aa8.17□□□□□ -1.1
CD44-221ENST00000526000 INHAP05111 366 aa8.17□□□□□ -1.1
CD44-221ENST00000526000 GJA8P48165 433 aa8.17□□□□□ -1.1
CD44-221ENST00000526000 TFCP2Q12800 502 aa8.17□□□□□ -1.1
CD44-221ENST00000526000 SPP2Q13103 211 aa8.17□□□□□ -1.1
CD44-221ENST00000526000 RASGRF1Q13972 1273 aa8.17□□□□□ -1.1
CD44-221ENST00000526000 NOL9Q5SY16 702 aaKnown RBP8.17□□□□□ -1.1
CD44-221ENST00000526000 TREML2Q5T2D2 321 aa8.17□□□□□ -1.1
CD44-221ENST00000526000 FASTKD5Q7L8L6 764 aaKnown RBP8.17□□□□□ -1.1
CD44-221ENST00000526000 NKX2-3Q8TAU0 364 aa8.17□□□□□ -1.1
CD44-221ENST00000526000 SMCR8Q8TEV9 937 aaPredicted RBP8.17□□□□□ -1.1
CD44-221ENST00000526000 MEIS3Q99687 375 aa8.17□□□□□ -1.1
CD44-221ENST00000526000 HTATIP2Q9BUP3 242 aa8.17□□□□□ -1.1
CD44-221ENST00000526000 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.17□□□□□ -1.1
CD44-221ENST00000526000 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.17□□□□□ -1.1
CD44-221ENST00000526000 A0A0G2JLL6 359 aaPredicted RBP8.16□□□□□ -1.1
CD44-221ENST00000526000 EVI5O60447 810 aa8.16□□□□□ -1.1
CD44-221ENST00000526000 ENTPD3O75355 529 aa8.16□□□□□ -1.1
CD44-221ENST00000526000 IL15P40933 162 aaPredicted RBP8.16□□□□□ -1.1
CD44-221ENST00000526000 MECOMQ03112 1051 aa8.16□□□□□ -1.1
CD44-221ENST00000526000 TRIM32Q13049 653 aa8.16□□□□□ -1.1
CD44-221ENST00000526000 RRP1BQ14684 758 aaKnown RBP8.16□□□□□ -1.1
CD44-221ENST00000526000 GORABQ5T7V8 394 aa8.16□□□□□ -1.1
CD44-221ENST00000526000 PI16Q6UXB8 463 aa8.16□□□□□ -1.1
CD44-221ENST00000526000 ERICH6Q7L0X2 663 aa8.16□□□□□ -1.1
CD44-221ENST00000526000 PRRT2Q7Z6L0 340 aaPredicted RBP8.16□□□□□ -1.1
CD44-221ENST00000526000 XAGE2Q96GT9 111 aa8.16□□□□□ -1.1
CD44-221ENST00000526000 PAWRQ96IZ0 340 aaKnown RBP8.16□□□□□ -1.1
CD44-221ENST00000526000 ZNF521Q96K83 1311 aa8.16□□□□□ -1.1
CD44-221ENST00000526000 RAI14Q9P0K7 980 aa8.16□□□□□ -1.1
CD44-221ENST00000526000 ZMYND8Q9ULU4 1186 aaPredicted RBP8.16□□□□□ -1.1
CD44-221ENST00000526000 NR2E3Q9Y5X4 410 aa8.16□□□□□ -1.1
CD44-221ENST00000526000 CEP290O15078 2479 aa8.15□□□□□ -1.1
CD44-221ENST00000526000 AK9Q5TCS8 1911 aa8.15□□□□□ -1.1
CD44-221ENST00000526000 KIF16BQ96L93 1317 aa8.15□□□□□ -1.1
CD44-221ENST00000526000 A0A1B0GUL7 405 aa8.15□□□□□ -1.1
CD44-221ENST00000526000 SOX1O00570 391 aaPredicted RBP8.15□□□□□ -1.1
CD44-221ENST00000526000 ZBTB7BO15156 539 aaPredicted RBP8.15□□□□□ -1.1
CD44-221ENST00000526000 CTNND1O60716 968 aaKnown RBP8.15□□□□□ -1.1
CD44-221ENST00000526000 CIAO1O76071 339 aa8.15□□□□□ -1.1
CD44-221ENST00000526000 SLAIN1Q8ND83 568 aa8.15□□□□□ -1.1
CD44-221ENST00000526000 SLC17A8Q8NDX2 589 aa8.15□□□□□ -1.1
CD44-221ENST00000526000 DIS3LQ8TF46 1054 aaKnown RBP8.15□□□□□ -1.1
CD44-221ENST00000526000 COA7Q96BR5 231 aa8.15□□□□□ -1.1
CD44-221ENST00000526000 LRCH3Q96II8 777 aa8.15□□□□□ -1.1
CD44-221ENST00000526000 IDI2Q9BXS1 227 aa8.15□□□□□ -1.1
CD44-221ENST00000526000 SNRKQ9NRH2 765 aa8.15□□□□□ -1.1
CD44-221ENST00000526000 TNNQ9UQP3 1299 aa8.15□□□□□ -1.1
CD44-221ENST00000526000 OTOFQ9HC10 1997 aa8.15□□□□□ -1.11
CD44-221ENST00000526000 SRGAP3O43295 1099 aa8.14□□□□□ -1.11
CD44-221ENST00000526000 SYN1P17600 705 aa8.14□□□□□ -1.11
CD44-221ENST00000526000 CYP2B6P20813 491 aa8.14□□□□□ -1.11
CD44-221ENST00000526000 HMGCS2P54868 508 aa8.14□□□□□ -1.11
CD44-221ENST00000526000 RHBDL3P58872 404 aa8.14□□□□□ -1.11
CD44-221ENST00000526000 SPTY2D1Q68D10 685 aaPredicted RBP8.14□□□□□ -1.11
CD44-221ENST00000526000 UBE2Q1Q7Z7E8 422 aa8.14□□□□□ -1.11
CD44-221ENST00000526000 C7orf61Q8IZ16 206 aa8.14□□□□□ -1.11
CD44-221ENST00000526000 ZGPATQ8N5A5 531 aaKnown RBP8.14□□□□□ -1.11
CD44-221ENST00000526000 ZNF384Q8TF68 577 aa8.14□□□□□ -1.11
CD44-221ENST00000526000 HMG20BQ9P0W2 317 aa8.14□□□□□ -1.11
CD44-221ENST00000526000 ECM29Q5VYK3 1845 aa8.14□□□□□ -1.11
CD44-221ENST00000526000 RPAP1Q9BWH6 1393 aaPredicted RBP8.13□□□□□ -1.11
CD44-221ENST00000526000 A0A1B0GUL6 1792 aa8.13□□□□□ -1.11
CD44-221ENST00000526000 GAKO14976 1311 aa8.13□□□□□ -1.11
CD44-221ENST00000526000 SALL1Q9NSC2 1324 aa8.13□□□□□ -1.11
CD44-221ENST00000526000 GPR75-ASB3A0A0A6YYF3 556 aa8.13□□□□□ -1.11
CD44-221ENST00000526000 SEMA3EO15041 775 aa8.13□□□□□ -1.11
CD44-221ENST00000526000 LDHCP07864 332 aa8.13□□□□□ -1.11
CD44-221ENST00000526000 JAG1P78504 1218 aa8.13□□□□□ -1.11
CD44-221ENST00000526000 MAP3K10Q02779 954 aa8.13□□□□□ -1.11
CD44-221ENST00000526000 SHROOM1Q2M3G4 852 aaPredicted RBP8.13□□□□□ -1.11
CD44-221ENST00000526000 ALDH1L2Q3SY69 923 aa8.13□□□□□ -1.11
CD44-221ENST00000526000 SLF2Q8IX21 1173 aa8.13□□□□□ -1.11
CD44-221ENST00000526000 TEX11Q8IYF3 940 aa8.13□□□□□ -1.11
CD44-221ENST00000526000 SH3RF3Q8TEJ3 882 aaPredicted RBP8.13□□□□□ -1.11
CD44-221ENST00000526000 CLUAP1Q96AJ1 413 aa8.13□□□□□ -1.11
CD44-221ENST00000526000 FAM163AQ96GL9 167 aaPredicted RBP8.13□□□□□ -1.11
CD44-221ENST00000526000 P2RX7Q99572 595 aaKnown RBP8.13□□□□□ -1.11
CD44-221ENST00000526000 API5Q9BZZ5 524 aaKnown RBP8.13□□□□□ -1.11
CD44-221ENST00000526000 ASCC2Q9H1I8 757 aaPredicted RBP8.13□□□□□ -1.11
CD44-221ENST00000526000 COPRSQ9NQ92 184 aa8.13□□□□□ -1.11
CD44-221ENST00000526000 LRP2BPQ9P2M1 347 aa8.13□□□□□ -1.11
CD44-221ENST00000526000 AGTPBP1Q9UPW5 1226 aa8.13□□□□□ -1.11
CD44-221ENST00000526000 ATRNL1Q5VV63 1379 aa8.12□□□□□ -1.11
CD44-221ENST00000526000 MROH7-TTC4A0A0A0MT08 1334 aa8.12□□□□□ -1.11
CD44-221ENST00000526000 CACNA1FO60840 1977 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms