RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 PRIMPOLQ96LW4 560 aa17.22■□□□□ 0.35
NUP54-217ENST00000514987 ZNF830Q96NB3 372 aaPredicted RBP17.22■□□□□ 0.35
NUP54-217ENST00000514987 KIF28PB7ZC32 967 aa17.21■□□□□ 0.35
NUP54-217ENST00000514987 SNAP23O00161 211 aa17.21■□□□□ 0.35
NUP54-217ENST00000514987 IGSF3O75054 1194 aa17.21■□□□□ 0.35
NUP54-217ENST00000514987 RBM6P78332 1123 aaKnown RBP17.21■□□□□ 0.35
NUP54-217ENST00000514987 SAFBQ15424 915 aaKnown RBP eCLIP17.21■□□□□ 0.35
NUP54-217ENST00000514987 VPS72Q15906 364 aa17.21■□□□□ 0.35
NUP54-217ENST00000514987 SPC24Q8NBT2 197 aa17.21■□□□□ 0.35
NUP54-217ENST00000514987 MRFAP1L1Q96HT8 127 aa17.21■□□□□ 0.35
NUP54-217ENST00000514987 BPIFA3Q9BQP9 254 aa17.21■□□□□ 0.35
NUP54-217ENST00000514987 FAM217BQ9NTX9 383 aaPredicted RBP17.21■□□□□ 0.35
NUP54-217ENST00000514987 NEMFO60524 1076 aa17.2■□□□□ 0.34
NUP54-217ENST00000514987 GTF2E1P29083 439 aaPredicted RBP17.2■□□□□ 0.34
NUP54-217ENST00000514987 NDUFA8P51970 172 aa17.2■□□□□ 0.34
NUP54-217ENST00000514987 DNTTIP2Q5QJE6 756 aaKnown RBP17.2■□□□□ 0.34
NUP54-217ENST00000514987 LINC00116Q8NCU8 138 aa17.2■□□□□ 0.34
NUP54-217ENST00000514987 KIAA1468Q9P260 1216 aa17.2■□□□□ 0.34
NUP54-217ENST00000514987 ECM29Q5VYK3 1845 aa17.2■□□□□ 0.34
NUP54-217ENST00000514987 FAM237AA0A1B0GTK4 181 aa17.19■□□□□ 0.34
NUP54-217ENST00000514987 A0A1B0GVL5 298 aa17.19■□□□□ 0.34
NUP54-217ENST00000514987 KCNQ2O43526 872 aa17.19■□□□□ 0.34
NUP54-217ENST00000514987 PPARAQ07869 468 aa17.19■□□□□ 0.34
NUP54-217ENST00000514987 RTN1Q16799 776 aa17.19■□□□□ 0.34
NUP54-217ENST00000514987 AXDND1Q5T1B0 1012 aaPredicted RBP17.19■□□□□ 0.34
NUP54-217ENST00000514987 ESR2Q92731 530 aa17.19■□□□□ 0.34
NUP54-217ENST00000514987 UBAC1Q9BSL1 405 aa17.19■□□□□ 0.34
NUP54-217ENST00000514987 BRIP1Q9BX63 1249 aa17.19■□□□□ 0.34
NUP54-217ENST00000514987 ANKRD2Q9GZV1 360 aa17.19■□□□□ 0.34
NUP54-217ENST00000514987 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.19■□□□□ 0.34
NUP54-217ENST00000514987 RAI14Q9P0K7 980 aa17.19■□□□□ 0.34
NUP54-217ENST00000514987 PRKAB2O43741 272 aa17.19■□□□□ 0.34
NUP54-217ENST00000514987 C11orf57Q6ZUT1 292 aaPredicted RBP17.19■□□□□ 0.34
NUP54-217ENST00000514987 PHKBQ93100 1093 aa17.19■□□□□ 0.34
NUP54-217ENST00000514987 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.19■□□□□ 0.34
NUP54-217ENST00000514987 SLC26A6Q9BXS9 759 aa17.19■□□□□ 0.34
NUP54-217ENST00000514987 KCNF1Q9H3M0 494 aa17.19■□□□□ 0.34
NUP54-217ENST00000514987 SENP2Q9HC62 589 aa17.19■□□□□ 0.34
NUP54-217ENST00000514987 NARFQ9UHQ1 456 aa17.19■□□□□ 0.34
NUP54-217ENST00000514987 MINPP1Q9UNW1 487 aa17.19■□□□□ 0.34
NUP54-217ENST00000514987 DYNC1I1O14576 645 aa17.18■□□□□ 0.34
NUP54-217ENST00000514987 RANBP6O60518 1105 aaKnown RBP17.18■□□□□ 0.34
NUP54-217ENST00000514987 CUTAO60888 179 aa17.18■□□□□ 0.34
NUP54-217ENST00000514987 RPS6KA4O75676 772 aa17.18■□□□□ 0.34
NUP54-217ENST00000514987 ZNF202O95125 648 aa17.18■□□□□ 0.34
NUP54-217ENST00000514987 SLC3A2P08195 630 aaKnown RBP17.18■□□□□ 0.34
NUP54-217ENST00000514987 TPM4P67936 248 aa17.18■□□□□ 0.34
NUP54-217ENST00000514987 DHX8Q14562 1220 aaKnown RBP17.18■□□□□ 0.34
NUP54-217ENST00000514987 MPNDQ8N594 471 aa17.18■□□□□ 0.34
NUP54-217ENST00000514987 TOMM22Q9NS69 142 aa17.18■□□□□ 0.34
NUP54-217ENST00000514987 CLIP2Q9UDT6 1046 aa17.18■□□□□ 0.34
NUP54-217ENST00000514987 ABCF2Q9UG63 623 aa17.18■□□□□ 0.34
NUP54-217ENST00000514987 CASZ1Q86V15 1759 aa17.18■□□□□ 0.34
NUP54-217ENST00000514987 DEXIO95424 95 aa17.17■□□□□ 0.34
NUP54-217ENST00000514987 PFKFB1P16118 471 aa17.17■□□□□ 0.34
NUP54-217ENST00000514987 PTGS1P23219 599 aa17.17■□□□□ 0.34
NUP54-217ENST00000514987 RRP12Q5JTH9 1297 aaKnown RBP17.17■□□□□ 0.34
NUP54-217ENST00000514987 CCDC186Q7Z3E2 898 aa17.17■□□□□ 0.34
NUP54-217ENST00000514987 MIGA1Q8NAN2 632 aa17.17■□□□□ 0.34
NUP54-217ENST00000514987 NKX2-3Q8TAU0 364 aa17.17■□□□□ 0.34
NUP54-217ENST00000514987 NLRP3Q96P20 1036 aa17.17■□□□□ 0.34
NUP54-217ENST00000514987 SETDB2Q96T68 719 aa17.17■□□□□ 0.34
NUP54-217ENST00000514987 NOL10Q9BSC4 688 aaKnown RBP17.17■□□□□ 0.34
NUP54-217ENST00000514987 FOXP1Q9H334 677 aaPredicted RBP17.17■□□□□ 0.34
NUP54-217ENST00000514987 GJB4Q9NTQ9 266 aa17.17■□□□□ 0.34
NUP54-217ENST00000514987 COL24A1Q17RW2 1714 aa17.17■□□□□ 0.34
NUP54-217ENST00000514987 RRP9O43818 475 aaKnown RBP17.16■□□□□ 0.34
NUP54-217ENST00000514987 RXRAP19793 462 aa17.16■□□□□ 0.34
NUP54-217ENST00000514987 GYG1P46976 350 aa17.16■□□□□ 0.34
NUP54-217ENST00000514987 NT5C2P49902 561 aa17.16■□□□□ 0.34
NUP54-217ENST00000514987 NLRP12P59046 1061 aa17.16■□□□□ 0.34
NUP54-217ENST00000514987 PTPAQ15257 358 aa17.16■□□□□ 0.34
NUP54-217ENST00000514987 FAM98CQ17RN3 349 aaKnown RBP17.16■□□□□ 0.34
NUP54-217ENST00000514987 FBXO33Q7Z6M2 555 aa17.16■□□□□ 0.34
NUP54-217ENST00000514987 NOSTRINQ8IVI9 506 aa17.16■□□□□ 0.34
NUP54-217ENST00000514987 DHX40Q8IX18 779 aaKnown RBP17.16■□□□□ 0.34
NUP54-217ENST00000514987 CCDC144CPQ8IYA2 1237 aa17.16■□□□□ 0.34
NUP54-217ENST00000514987 ELOA2Q8IYF1 753 aaPredicted RBP17.16■□□□□ 0.34
NUP54-217ENST00000514987 AIFM3Q96NN9 605 aa17.16■□□□□ 0.34
NUP54-217ENST00000514987 MAP3K14Q99558 947 aa17.16■□□□□ 0.34
NUP54-217ENST00000514987 RIOK1Q9BRS2 568 aaKnown RBP17.16■□□□□ 0.34
NUP54-217ENST00000514987 UQCRHLA0A096LP55 91 aa17.15■□□□□ 0.34
NUP54-217ENST00000514987 SMTNL1A8MU46 457 aa17.15■□□□□ 0.34
NUP54-217ENST00000514987 MMP1P03956 469 aa17.15■□□□□ 0.34
NUP54-217ENST00000514987 UQCRHP07919 91 aa17.15■□□□□ 0.34
NUP54-217ENST00000514987 CALM1P0DP23 149 aa17.15■□□□□ 0.34
NUP54-217ENST00000514987 CALM2P0DP24 149 aa17.15■□□□□ 0.34
NUP54-217ENST00000514987 CALM3P0DP25 149 aa17.15■□□□□ 0.34
NUP54-217ENST00000514987 SYKP43405 635 aa17.15■□□□□ 0.34
NUP54-217ENST00000514987 RPS8P62241 208 aaKnown RBP17.15■□□□□ 0.34
NUP54-217ENST00000514987 ZNF654Q8IZM8 581 aa17.15■□□□□ 0.34
NUP54-217ENST00000514987 CRACR2BQ8N4Y2 399 aaPredicted RBP17.15■□□□□ 0.34
NUP54-217ENST00000514987 FANCBQ8NB91 859 aa17.15■□□□□ 0.34
NUP54-217ENST00000514987 FAM84BQ96KN1 310 aaPredicted RBP17.15■□□□□ 0.34
NUP54-217ENST00000514987 INCENPQ9NQS7 918 aa17.15■□□□□ 0.34
NUP54-217ENST00000514987 HPSEQ9Y251 543 aa17.15■□□□□ 0.34
NUP54-217ENST00000514987 TACC3Q9Y6A5 838 aa17.15■□□□□ 0.34
NUP54-217ENST00000514987 CACNA1SQ13698 1873 aa17.15■□□□□ 0.34
NUP54-217ENST00000514987 ZPR1O75312 459 aa17.15■□□□□ 0.34
NUP54-217ENST00000514987 XBP1P17861 261 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms