RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 MRPL40Q9NQ50 206 aaKnown RBP4.01□□□□□ -1.77
USP53-205ENST00000509769 HOMER3Q9NSC5 361 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 STK32BQ9NY57 414 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 CFDP1Q9UEE9 299 aaPredicted RBP4.01□□□□□ -1.77
USP53-205ENST00000509769 DNAI1Q9UI46 699 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 TTF2Q9UNY4 1162 aaKnown RBP4.01□□□□□ -1.77
USP53-205ENST00000509769 RASSF10A6NK89 507 aa4□□□□□ -1.77
USP53-205ENST00000509769 SLC3A2P08195 630 aaKnown RBP4□□□□□ -1.77
USP53-205ENST00000509769 LONP1P36776 959 aaKnown RBP4□□□□□ -1.77
USP53-205ENST00000509769 MATR3P43243 847 aaKnown RBP eCLIP4□□□□□ -1.77
USP53-205ENST00000509769 HDAC4P56524 1084 aa4□□□□□ -1.77
USP53-205ENST00000509769 PHEXP78562 749 aa4□□□□□ -1.77
USP53-205ENST00000509769 XPCQ01831 940 aaPredicted RBP4□□□□□ -1.77
USP53-205ENST00000509769 CETN1Q12798 172 aa4□□□□□ -1.77
USP53-205ENST00000509769 HLTFQ14527 1009 aaKnown RBP eCLIP4□□□□□ -1.77
USP53-205ENST00000509769 USP37Q86T82 979 aa4□□□□□ -1.77
USP53-205ENST00000509769 IQCA1Q86XH1 822 aa4□□□□□ -1.77
USP53-205ENST00000509769 IFT20Q8IY31 132 aa4□□□□□ -1.77
USP53-205ENST00000509769 TEX11Q8IYF3 940 aa4□□□□□ -1.77
USP53-205ENST00000509769 MSL3Q8N5Y2 521 aaKnown RBP4□□□□□ -1.77
USP53-205ENST00000509769 MAIP1Q8WWC4 291 aa4□□□□□ -1.77
USP53-205ENST00000509769 ATP6V0A1Q93050 837 aa4□□□□□ -1.77
USP53-205ENST00000509769 CRBNQ96SW2 442 aa4□□□□□ -1.77
USP53-205ENST00000509769 ABCF3Q9NUQ8 709 aa4□□□□□ -1.77
USP53-205ENST00000509769 ZMYND8Q9ULU4 1186 aaPredicted RBP4□□□□□ -1.77
USP53-205ENST00000509769 PREX2Q70Z35 1606 aa4□□□□□ -1.77
USP53-205ENST00000509769 TARSL2A2RTX5 802 aaKnown RBP4□□□□□ -1.77
USP53-205ENST00000509769 ENO4A6NNW6 628 aa4□□□□□ -1.77
USP53-205ENST00000509769 VCAM1P19320 739 aa4□□□□□ -1.77
USP53-205ENST00000509769 PPM1FP49593 454 aaPredicted RBP4□□□□□ -1.77
USP53-205ENST00000509769 PSME1Q06323 249 aa4□□□□□ -1.77
USP53-205ENST00000509769 CRYMQ14894 314 aa4□□□□□ -1.77
USP53-205ENST00000509769 TEDDM1Q5T9Z0 273 aa4□□□□□ -1.77
USP53-205ENST00000509769 TRIM42Q8IWZ5 723 aa4□□□□□ -1.77
USP53-205ENST00000509769 CATSPER1Q8NEC5 780 aa4□□□□□ -1.77
USP53-205ENST00000509769 PPIL4Q8WUA2 492 aaKnown RBP eCLIP4□□□□□ -1.77
USP53-205ENST00000509769 SIL1Q9H173 461 aa4□□□□□ -1.77
USP53-205ENST00000509769 RAD21L1Q9H4I0 556 aa4□□□□□ -1.77
USP53-205ENST00000509769 SLC38A10Q9HBR0 1119 aa4□□□□□ -1.77
USP53-205ENST00000509769 CNGB3Q9NQW8 809 aa4□□□□□ -1.77
USP53-205ENST00000509769 GNL3LQ9NVN8 582 aaKnown RBP4□□□□□ -1.77
USP53-205ENST00000509769 IRAK4Q9NWZ3 460 aa4□□□□□ -1.77
USP53-205ENST00000509769 DONSONQ9NYP3 566 aa4□□□□□ -1.77
USP53-205ENST00000509769 STMN3Q9NZ72 180 aa4□□□□□ -1.77
USP53-205ENST00000509769 IL1RAPL1Q9NZN1 696 aa4□□□□□ -1.77
USP53-205ENST00000509769 EMC3Q9P0I2 261 aa4□□□□□ -1.77
USP53-205ENST00000509769 ABCC5O15440 1437 aa4□□□□□ -1.77
USP53-205ENST00000509769 PLXNC1O60486 1568 aa4□□□□□ -1.77
USP53-205ENST00000509769 CFAP73A6NFT4 308 aa4□□□□□ -1.77
USP53-205ENST00000509769 MCF2LO15068 1137 aa4□□□□□ -1.77
USP53-205ENST00000509769 ACTN4O43707 911 aaKnown RBP4□□□□□ -1.77
USP53-205ENST00000509769 ADCY5O95622 1261 aa4□□□□□ -1.77
USP53-205ENST00000509769 SYF2O95926 243 aaKnown RBP4□□□□□ -1.77
USP53-205ENST00000509769 ACTN2P35609 894 aa4□□□□□ -1.77
USP53-205ENST00000509769 INPP1P49441 399 aa4□□□□□ -1.77
USP53-205ENST00000509769 HDGFL1Q5TGJ6 251 aa4□□□□□ -1.77
USP53-205ENST00000509769 SLC4A10Q6U841 1118 aa4□□□□□ -1.77
USP53-205ENST00000509769 NLRP9Q7RTR0 991 aa4□□□□□ -1.77
USP53-205ENST00000509769 FCHSD1Q86WN1 690 aa4□□□□□ -1.77
USP53-205ENST00000509769 CCDC12Q8WUD4 166 aaPredicted RBP4□□□□□ -1.77
USP53-205ENST00000509769 RUBCNQ92622 972 aa4□□□□□ -1.77
USP53-205ENST00000509769 SNX21Q969T3 373 aa4□□□□□ -1.77
USP53-205ENST00000509769 CCDC85AQ96PX6 553 aaPredicted RBP4□□□□□ -1.77
USP53-205ENST00000509769 ZSCAN16Q9H4T2 348 aaPredicted RBP4□□□□□ -1.77
USP53-205ENST00000509769 FAM96AQ9H5X1 160 aa4□□□□□ -1.77
USP53-205ENST00000509769 SH2D4AQ9H788 454 aa4□□□□□ -1.77
USP53-205ENST00000509769 CNOT10Q9H9A5 744 aaKnown RBP4□□□□□ -1.77
USP53-205ENST00000509769 IQSEC3Q9UPP2 1182 aaPredicted RBP4□□□□□ -1.77
USP53-205ENST00000509769 RRP15Q9Y3B9 282 aaKnown RBP4□□□□□ -1.77
USP53-205ENST00000509769 NCOA2Q15596 1464 aa4□□□□□ -1.77
USP53-205ENST00000509769 PALM3A6NDB9 673 aaPredicted RBP4□□□□□ -1.77
USP53-205ENST00000509769 SYCE1LA8MT33 242 aa4□□□□□ -1.77
USP53-205ENST00000509769 XPOTO43592 962 aaKnown RBP4□□□□□ -1.77
USP53-205ENST00000509769 TRIM37O94972 964 aa4□□□□□ -1.77
USP53-205ENST00000509769 APOA1P02647 267 aa4□□□□□ -1.77
USP53-205ENST00000509769 GNAI3P08754 354 aa4□□□□□ -1.77
USP53-205ENST00000509769 PYGBP11216 843 aa4□□□□□ -1.77
USP53-205ENST00000509769 KRT2P35908 639 aa4□□□□□ -1.77
USP53-205ENST00000509769 SERPINB10P48595 397 aa4□□□□□ -1.77
USP53-205ENST00000509769 PAK2Q13177 524 aa4□□□□□ -1.77
USP53-205ENST00000509769 SLFNL1Q499Z3 407 aa4□□□□□ -1.77
USP53-205ENST00000509769 LGSNQ5TDP6 509 aa4□□□□□ -1.77
USP53-205ENST00000509769 STXBP4Q6ZWJ1 553 aa4□□□□□ -1.77
USP53-205ENST00000509769 EXOC6Q8TAG9 804 aa4□□□□□ -1.77
USP53-205ENST00000509769 C17orf50Q8WW18 174 aa4□□□□□ -1.77
USP53-205ENST00000509769 NLRP7Q8WX94 980 aa4□□□□□ -1.77
USP53-205ENST00000509769 EFHD1Q9BUP0 239 aa4□□□□□ -1.77
USP53-205ENST00000509769 ANKRD2Q9GZV1 360 aa4□□□□□ -1.77
USP53-205ENST00000509769 BHMT2Q9H2M3 363 aa4□□□□□ -1.77
USP53-205ENST00000509769 TMEM2Q9UHN6 1383 aa3.99□□□□□ -1.77
USP53-205ENST00000509769 DEAF1O75398 565 aaPredicted RBP3.99□□□□□ -1.77
USP53-205ENST00000509769 ADAMTS2O95450 1211 aa3.99□□□□□ -1.77
USP53-205ENST00000509769 CCDC159P0C7I6 412 aa3.99□□□□□ -1.77
USP53-205ENST00000509769 EVCP57679 992 aa3.99□□□□□ -1.77
USP53-205ENST00000509769 AMPD3Q01432 767 aa3.99□□□□□ -1.77
USP53-205ENST00000509769 PDE1CQ14123 709 aaPredicted RBP3.99□□□□□ -1.77
USP53-205ENST00000509769 CNGA2Q16280 664 aa3.99□□□□□ -1.77
USP53-205ENST00000509769 SLC30A9Q6PML9 568 aa3.99□□□□□ -1.77
USP53-205ENST00000509769 P3H3Q8IVL6 736 aa3.99□□□□□ -1.77
USP53-205ENST00000509769 ST13P5Q8NFI4 369 aaPredicted RBP3.99□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms