RNA–Protein interactions for RNA: ENST00000507597.5

USP53-203, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 3

Gene USP53, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-203ENST00000507597 SLFNL1Q499Z3 407 aa24.03■■□□□ 1.44
USP53-203ENST00000507597 USP48Q86UV5 1035 aa24.03■■□□□ 1.44
USP53-203ENST00000507597 POTEIP0CG38 1075 aa24.02■■□□□ 1.44
USP53-203ENST00000507597 POTEJP0CG39 1038 aa24.02■■□□□ 1.44
USP53-203ENST00000507597 CACNB3P54284 484 aa24.02■■□□□ 1.44
USP53-203ENST00000507597 TCP10Q12799 353 aa24.02■■□□□ 1.44
USP53-203ENST00000507597 TTC6Q86TZ1 520 aa24.02■■□□□ 1.44
USP53-203ENST00000507597 SEC62Q99442 399 aaKnown RBP24.02■■□□□ 1.44
USP53-203ENST00000507597 OSBPL5Q9H0X9 879 aaPredicted RBP24.02■■□□□ 1.44
USP53-203ENST00000507597 ECM29Q5VYK3 1845 aa24.02■■□□□ 1.44
USP53-203ENST00000507597 ASTN2O75129 1339 aaPredicted RBP24.02■■□□□ 1.44
USP53-203ENST00000507597 CHGBP05060 677 aa24.01■■□□□ 1.43
USP53-203ENST00000507597 MAPKAPK5Q8IW41 473 aa24.01■■□□□ 1.43
USP53-203ENST00000507597 FAM198AQ9UFP1 575 aa24.01■■□□□ 1.43
USP53-203ENST00000507597 TAOK2Q9UL54 1235 aa24.01■■□□□ 1.43
USP53-203ENST00000507597 FLT1P17948 1338 aa24.01■■□□□ 1.43
USP53-203ENST00000507597 POLR3DP05423 398 aaPredicted RBP24■■□□□ 1.43
USP53-203ENST00000507597 NFIAQ12857 509 aa24■■□□□ 1.43
USP53-203ENST00000507597 TRIM34Q9BYJ4 488 aa24■■□□□ 1.43
USP53-203ENST00000507597 GLIS2Q9BZE0 524 aaPredicted RBP24■■□□□ 1.43
USP53-203ENST00000507597 SGSM2O43147 1006 aa23.99■■□□□ 1.43
USP53-203ENST00000507597 TDO2P48775 406 aa23.99■■□□□ 1.43
USP53-203ENST00000507597 DCAF15Q66K64 600 aa23.99■■□□□ 1.43
USP53-203ENST00000507597 SDR42E1Q8WUS8 393 aa23.99■■□□□ 1.43
USP53-203ENST00000507597 NAPBQ9H115 298 aa23.99■■□□□ 1.43
USP53-203ENST00000507597 DCP1AQ9NPI6 582 aaPredicted RBP23.99■■□□□ 1.43
USP53-203ENST00000507597 MCM9Q9NXL9 1143 aa23.99■■□□□ 1.43
USP53-203ENST00000507597 PI4KBQ9UBF8 816 aa23.99■■□□□ 1.43
USP53-203ENST00000507597 ARPP21Q9UBL0 812 aaPredicted RBP23.99■■□□□ 1.43
USP53-203ENST00000507597 ADAMTSL1Q8N6G6 1762 aa23.98■■□□□ 1.43
USP53-203ENST00000507597 PPP1R12BO60237 982 aaPredicted RBP23.98■■□□□ 1.43
USP53-203ENST00000507597 ESYT1Q9BSJ8 1104 aa23.98■■□□□ 1.43
USP53-203ENST00000507597 DSCC1Q9BVC3 393 aa23.98■■□□□ 1.43
USP53-203ENST00000507597 DDX4Q9NQI0 724 aaKnown RBP23.98■■□□□ 1.43
USP53-203ENST00000507597 CTNNA3Q9UI47 895 aa23.98■■□□□ 1.43
USP53-203ENST00000507597 COL2A1P02458 1487 aaPredicted RBP23.98■■□□□ 1.43
USP53-203ENST00000507597 ADM5C9JUS6 153 aa23.97■■□□□ 1.43
USP53-203ENST00000507597 ALX1Q15699 326 aa23.97■■□□□ 1.43
USP53-203ENST00000507597 CCDC129Q6ZRS4 1044 aa23.97■■□□□ 1.43
USP53-203ENST00000507597 FOXP4Q8IVH2 680 aaPredicted RBP23.97■■□□□ 1.43
USP53-203ENST00000507597 IFNL3Q8IZI9 196 aa23.97■■□□□ 1.43
USP53-203ENST00000507597 CSRNP1Q96S65 589 aa23.97■■□□□ 1.43
USP53-203ENST00000507597 TMEM39BQ9GZU3 492 aa23.97■■□□□ 1.43
USP53-203ENST00000507597 CNTNAP1P78357 1384 aa23.96■■□□□ 1.43
USP53-203ENST00000507597 ATRNL1Q5VV63 1379 aa23.96■■□□□ 1.43
USP53-203ENST00000507597 GSG1L2A8MUP6 293 aa23.96■■□□□ 1.43
USP53-203ENST00000507597 PRKAB2O43741 272 aa23.96■■□□□ 1.43
USP53-203ENST00000507597 SLC3A2P08195 630 aaKnown RBP23.96■■□□□ 1.43
USP53-203ENST00000507597 HSPD1P10809 573 aaKnown RBP23.96■■□□□ 1.43
USP53-203ENST00000507597 CDCA5Q96FF9 252 aa23.96■■□□□ 1.43
USP53-203ENST00000507597 ZNF287Q9HBT7 754 aa23.96■■□□□ 1.43
USP53-203ENST00000507597 REC8O95072 547 aa23.95■■□□□ 1.42
USP53-203ENST00000507597 ITGBL1O95965 494 aaPredicted RBP23.95■■□□□ 1.42
USP53-203ENST00000507597 SBK1Q52WX2 424 aa23.95■■□□□ 1.42
USP53-203ENST00000507597 ZNF589Q86UQ0 364 aaPredicted RBP23.95■■□□□ 1.42
USP53-203ENST00000507597 CRACR2BQ8N4Y2 399 aaPredicted RBP23.95■■□□□ 1.42
USP53-203ENST00000507597 MKRN1Q9UHC7 482 aaKnown RBP23.95■■□□□ 1.42
USP53-203ENST00000507597 HERC5Q9UII4 1024 aaKnown RBP23.95■■□□□ 1.42
USP53-203ENST00000507597 ZMYM6O95789 1325 aa23.94■■□□□ 1.42
USP53-203ENST00000507597 FKBP1BP68106 108 aa23.94■■□□□ 1.42
USP53-203ENST00000507597 C2orf69Q8N8R5 385 aa23.94■■□□□ 1.42
USP53-203ENST00000507597 SAP30BPQ9UHR5 308 aaKnown RBP23.94■■□□□ 1.42
USP53-203ENST00000507597 TBC1D12O60347 775 aa23.93■■□□□ 1.42
USP53-203ENST00000507597 ARMC9Q7Z3E5 817 aa23.93■■□□□ 1.42
USP53-203ENST00000507597 TEPSINQ96N21 525 aa23.93■■□□□ 1.42
USP53-203ENST00000507597 PALD1Q9ULE6 856 aa23.93■■□□□ 1.42
USP53-203ENST00000507597 SCAF8Q9UPN6 1271 aaKnown RBP23.93■■□□□ 1.42
USP53-203ENST00000507597 USP17L12C9JPN9 530 aa23.92■■□□□ 1.42
USP53-203ENST00000507597 USP17L21D6R901 530 aa23.92■■□□□ 1.42
USP53-203ENST00000507597 TTLL12Q14166 644 aaPredicted RBP23.92■■□□□ 1.42
USP53-203ENST00000507597 NBPF12Q5TAG4 269 aaPredicted RBP23.92■■□□□ 1.42
USP53-203ENST00000507597 ZFPM1Q8IX07 1006 aa23.92■■□□□ 1.42
USP53-203ENST00000507597 EHD4Q9H223 541 aa23.92■■□□□ 1.42
USP53-203ENST00000507597 ZNF408Q9H9D4 720 aa23.92■■□□□ 1.42
USP53-203ENST00000507597 ANO2Q9NQ90 1003 aa23.92■■□□□ 1.42
USP53-203ENST00000507597 SERPINB13Q9UIV8 391 aa23.92■■□□□ 1.42
USP53-203ENST00000507597 U3KPZ7 1027 aaPredicted RBP23.92■■□□□ 1.42
USP53-203ENST00000507597 DDTLA6NHG4 134 aaPredicted RBP23.91■■□□□ 1.42
USP53-203ENST00000507597 MINDY4BA8MYZ0 360 aa23.91■■□□□ 1.42
USP53-203ENST00000507597 EPB41L2O43491 1005 aaKnown RBP23.91■■□□□ 1.42
USP53-203ENST00000507597 CELF2O95319 508 aaKnown RBP23.91■■□□□ 1.42
USP53-203ENST00000507597 IREB2P48200 963 aaKnown RBP23.91■■□□□ 1.42
USP53-203ENST00000507597 CTR9Q6PD62 1173 aa23.91■■□□□ 1.42
USP53-203ENST00000507597 ZNF341Q9BYN7 854 aa23.91■■□□□ 1.42
USP53-203ENST00000507597 XPO5Q9HAV4 1204 aaKnown RBP eCLIP23.91■■□□□ 1.42
USP53-203ENST00000507597 SWAP70Q9UH65 585 aa23.91■■□□□ 1.42
USP53-203ENST00000507597 UNCXA6NJT0 531 aa23.9■■□□□ 1.42
USP53-203ENST00000507597 TRAF5O00463 557 aa23.9■■□□□ 1.42
USP53-203ENST00000507597 FGAP02671 866 aa23.9■■□□□ 1.42
USP53-203ENST00000507597 IMMTQ16891 758 aaKnown RBP23.9■■□□□ 1.42
USP53-203ENST00000507597 C12orf60Q5U649 245 aa23.9■■□□□ 1.42
USP53-203ENST00000507597 PRAMEF18Q5VWM3 479 aa23.9■■□□□ 1.42
USP53-203ENST00000507597 ZNF213O14771 459 aa23.89■■□□□ 1.41
USP53-203ENST00000507597 PDE4BQ07343 736 aa23.89■■□□□ 1.41
USP53-203ENST00000507597 VPS53Q5VIR6 699 aa23.89■■□□□ 1.41
USP53-203ENST00000507597 GBA2Q9HCG7 927 aaPredicted RBP23.89■■□□□ 1.41
USP53-203ENST00000507597 POLR2AP24928 1970 aaKnown RBP23.89■■□□□ 1.41
USP53-203ENST00000507597 PASKQ96RG2 1323 aa23.88■■□□□ 1.41
USP53-203ENST00000507597 NT5C2P49902 561 aa23.88■■□□□ 1.41
USP53-203ENST00000507597 MAP3K10Q02779 954 aa23.88■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms