RNA–Protein interactions for RNA: ENST00000498041.1

RIF1-212, Transcript of replication timing regulatory factor 1, human

TSL 3

Gene RIF1, Length 776 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RIF1-212	ENST00000498041	HMX2	A2RU54	273 aa		4.92	□□□□□ -1.62
RIF1-212	ENST00000498041	TMPRSS2	O15393	492 aa		4.92	□□□□□ -1.62
RIF1-212	ENST00000498041	ADAMTS4	O75173	837 aa		4.92	□□□□□ -1.62
RIF1-212	ENST00000498041	LMNB1	P20700	586 aa		4.92	□□□□□ -1.62
RIF1-212	ENST00000498041	MAP4	P27816	1152 aa	Known RBP	4.92	□□□□□ -1.62
RIF1-212	ENST00000498041	GRIK1	P39086	918 aa		4.92	□□□□□ -1.62
RIF1-212	ENST00000498041	ASPA	P45381	313 aa		4.92	□□□□□ -1.62
RIF1-212	ENST00000498041	LIG3	P49916	1009 aa		4.92	□□□□□ -1.62
RIF1-212	ENST00000498041	ID3	Q02535	119 aa		4.92	□□□□□ -1.62
RIF1-212	ENST00000498041	MAP3K11	Q16584	847 aa		4.92	□□□□□ -1.62
RIF1-212	ENST00000498041	SGO2	Q562F6	1265 aa		4.92	□□□□□ -1.62
RIF1-212	ENST00000498041	MPRIP	Q6WCQ1	1025 aa		4.92	□□□□□ -1.62
RIF1-212	ENST00000498041	CLEC10A	Q8IUN9	316 aa		4.92	□□□□□ -1.62
RIF1-212	ENST00000498041	YIPF2	Q9BWQ6	316 aa		4.92	□□□□□ -1.62
RIF1-212	ENST00000498041	KCNF1	Q9H3M0	494 aa		4.92	□□□□□ -1.62
RIF1-212	ENST00000498041	GSX1	Q9H4S2	264 aa	Predicted RBP	4.92	□□□□□ -1.62
RIF1-212	ENST00000498041	CRIM1	Q9NZV1	1036 aa		4.92	□□□□□ -1.62
RIF1-212	ENST00000498041	PPP1R9A	Q9ULJ8	1098 aa		4.92	□□□□□ -1.62
RIF1-212	ENST00000498041	ACTL7B	Q9Y614	415 aa		4.92	□□□□□ -1.62
RIF1-212	ENST00000498041	KIR2DP1	A0A0G2JNF4	349 aa	Predicted RBP	4.91	□□□□□ -1.62
RIF1-212	ENST00000498041	GSC2	O15499	205 aa		4.91	□□□□□ -1.62
RIF1-212	ENST00000498041	RXRB	P28702	533 aa		4.91	□□□□□ -1.62
RIF1-212	ENST00000498041	ZC3H12A	Q5D1E8	599 aa	Known RBP	4.91	□□□□□ -1.62
RIF1-212	ENST00000498041	CDPF1	Q6NVV7	123 aa		4.91	□□□□□ -1.62
RIF1-212	ENST00000498041	AGMO	Q6ZNB7	445 aa		4.91	□□□□□ -1.62
RIF1-212	ENST00000498041	BEND4	Q6ZU67	534 aa		4.91	□□□□□ -1.62
RIF1-212	ENST00000498041	TRIM42	Q8IWZ5	723 aa		4.91	□□□□□ -1.62
RIF1-212	ENST00000498041	FAM83C	Q9BQN1	747 aa		4.91	□□□□□ -1.62
RIF1-212	ENST00000498041	ATXN3L	Q9H3M9	355 aa		4.91	□□□□□ -1.62
RIF1-212	ENST00000498041	PCDHGC5	Q9Y5F6	944 aa		4.91	□□□□□ -1.62
RIF1-212	ENST00000498041	FAM95C	A0A1B0GW59	222 aa		4.9	□□□□□ -1.63
RIF1-212	ENST00000498041	VAMP1	P23763	118 aa		4.9	□□□□□ -1.63
RIF1-212	ENST00000498041	NFIA	Q12857	509 aa		4.9	□□□□□ -1.63
RIF1-212	ENST00000498041	PWP1	Q13610	501 aa		4.9	□□□□□ -1.63
RIF1-212	ENST00000498041	PAOX	Q6QHF9	649 aa		4.9	□□□□□ -1.63
RIF1-212	ENST00000498041	ZDHHC13	Q8IUH4	622 aa		4.9	□□□□□ -1.63
RIF1-212	ENST00000498041	RELL1	Q8IUW5	271 aa		4.9	□□□□□ -1.63
RIF1-212	ENST00000498041	TMEM87A	Q8NBN3	555 aa		4.9	□□□□□ -1.63
RIF1-212	ENST00000498041	FBLIM1	Q8WUP2	373 aa		4.9	□□□□□ -1.63
RIF1-212	ENST00000498041	EZH1	Q92800	747 aa	Predicted RBP	4.9	□□□□□ -1.63
RIF1-212	ENST00000498041	FANCD2OS	Q96PS1	177 aa		4.9	□□□□□ -1.63
RIF1-212	ENST00000498041	FMNL2	Q96PY5	1086 aa		4.9	□□□□□ -1.63
RIF1-212	ENST00000498041	RSRP1	Q9BUV0	290 aa		4.9	□□□□□ -1.63
RIF1-212	ENST00000498041	C7orf69	Q9H7B7	122 aa		4.9	□□□□□ -1.63
RIF1-212	ENST00000498041	PIDD1	Q9HB75	910 aa		4.9	□□□□□ -1.63
RIF1-212	ENST00000498041	DISC1	Q9NRI5	854 aa		4.9	□□□□□ -1.63
RIF1-212	ENST00000498041	FAM105A	Q9NUU6	356 aa		4.9	□□□□□ -1.63
RIF1-212	ENST00000498041	PCDHA4	Q9UN74	947 aa		4.9	□□□□□ -1.63
RIF1-212	ENST00000498041	RAB6A	P20340	208 aa		4.89	□□□□□ -1.63
RIF1-212	ENST00000498041	ERVK-24	P63145	666 aa		4.89	□□□□□ -1.63
RIF1-212	ENST00000498041	FZD5	Q13467	585 aa		4.89	□□□□□ -1.63
RIF1-212	ENST00000498041	MAP7	Q14244	749 aa		4.89	□□□□□ -1.63
RIF1-212	ENST00000498041	NFKBIB	Q15653	356 aa		4.89	□□□□□ -1.63
RIF1-212	ENST00000498041	DIEXF	Q68CQ4	756 aa	Known RBP	4.89	□□□□□ -1.63
RIF1-212	ENST00000498041	RNF43	Q68DV7	783 aa		4.89	□□□□□ -1.63
RIF1-212	ENST00000498041	PHC3	Q8NDX5	983 aa		4.89	□□□□□ -1.63
RIF1-212	ENST00000498041	GAL3ST3	Q96A11	431 aa		4.89	□□□□□ -1.63
RIF1-212	ENST00000498041	BACH2	Q9BYV9	841 aa		4.89	□□□□□ -1.63
RIF1-212	ENST00000498041	MIR1-1HG	Q9H1L0	117 aa		4.89	□□□□□ -1.63
RIF1-212	ENST00000498041	ACSS3	Q9H6R3	686 aa		4.89	□□□□□ -1.63
RIF1-212	ENST00000498041	TLR6	Q9Y2C9	796 aa		4.89	□□□□□ -1.63
RIF1-212	ENST00000498041	PCDHB5	Q9Y5E4	795 aa		4.89	□□□□□ -1.63
RIF1-212	ENST00000498041	KIAA1324L	A8MWY0	1029 aa	Predicted RBP	4.88	□□□□□ -1.63
RIF1-212	ENST00000498041	DCDC2C	A8MYV0	355 aa		4.88	□□□□□ -1.63
RIF1-212	ENST00000498041	WNT11	O96014	354 aa		4.88	□□□□□ -1.63
RIF1-212	ENST00000498041	NFIC	P08651	508 aa		4.88	□□□□□ -1.63
RIF1-212	ENST00000498041	TFE3	P19532	575 aa	Predicted RBP	4.88	□□□□□ -1.63
RIF1-212	ENST00000498041	GBP2	P32456	591 aa	Predicted RBP	4.88	□□□□□ -1.63
RIF1-212	ENST00000498041	LMNB2	Q03252	620 aa		4.88	□□□□□ -1.63
RIF1-212	ENST00000498041	PTPN11	Q06124	597 aa	Predicted RBP	4.88	□□□□□ -1.63
RIF1-212	ENST00000498041	SEPT6	Q14141	434 aa		4.88	□□□□□ -1.63
RIF1-212	ENST00000498041	TTLL4	Q14679	1199 aa		4.88	□□□□□ -1.63
RIF1-212	ENST00000498041	TSNAXIP1	Q2TAA8	658 aa		4.88	□□□□□ -1.63
RIF1-212	ENST00000498041	LDLRAD1	Q5T700	205 aa		4.88	□□□□□ -1.63
RIF1-212	ENST00000498041	HS2ST1	Q7LGA3	356 aa		4.88	□□□□□ -1.63
RIF1-212	ENST00000498041	ERMP1	Q7Z2K6	904 aa		4.88	□□□□□ -1.63
RIF1-212	ENST00000498041	HDX	Q7Z353	690 aa		4.88	□□□□□ -1.63
RIF1-212	ENST00000498041	CCDC84	Q86UT8	332 aa	Predicted RBP	4.88	□□□□□ -1.63
RIF1-212	ENST00000498041	RNF214	Q8ND24	703 aa		4.88	□□□□□ -1.63
RIF1-212	ENST00000498041	SHKBP1	Q8TBC3	707 aa		4.88	□□□□□ -1.63
RIF1-212	ENST00000498041	ELMO3	Q96BJ8	720 aa		4.88	□□□□□ -1.63
RIF1-212	ENST00000498041	MRRF	Q96E11	262 aa	Known RBP	4.88	□□□□□ -1.63
RIF1-212	ENST00000498041	TMEM74	Q96NL1	305 aa		4.88	□□□□□ -1.63
RIF1-212	ENST00000498041	SEMA6C	Q9H3T2	930 aa		4.88	□□□□□ -1.63
RIF1-212	ENST00000498041	SNCAIP	Q9Y6H5	919 aa		4.88	□□□□□ -1.63
RIF1-212	ENST00000498041	WDR64	B1ANS9	1081 aa		4.87	□□□□□ -1.63
RIF1-212	ENST00000498041	RNGTT	O60942	597 aa	Known RBP	4.87	□□□□□ -1.63
RIF1-212	ENST00000498041	HCLS1	P14317	486 aa	Predicted RBP	4.87	□□□□□ -1.63
RIF1-212	ENST00000498041	RING1	Q06587	406 aa		4.87	□□□□□ -1.63
RIF1-212	ENST00000498041	PPM1J	Q5JR12	505 aa		4.87	□□□□□ -1.63
RIF1-212	ENST00000498041	INTS5	Q6P9B9	1019 aa	Known RBP	4.87	□□□□□ -1.63
RIF1-212	ENST00000498041	LRFN4	Q6PJG9	635 aa		4.87	□□□□□ -1.63
RIF1-212	ENST00000498041	C12orf40	Q86WS4	652 aa		4.87	□□□□□ -1.63
RIF1-212	ENST00000498041	SMYD4	Q8IYR2	804 aa	Predicted RBP	4.87	□□□□□ -1.63
RIF1-212	ENST00000498041	JARID2	Q92833	1246 aa	Predicted RBP	4.87	□□□□□ -1.63
RIF1-212	ENST00000498041	DBNDD2	Q9BQY9	259 aa		4.87	□□□□□ -1.63
RIF1-212	ENST00000498041	PICK1	Q9NRD5	415 aa		4.87	□□□□□ -1.63
RIF1-212	ENST00000498041	METTL5	Q9NRN9	209 aa	Known RBP	4.87	□□□□□ -1.63
RIF1-212	ENST00000498041	KBTBD4	Q9NVX7	518 aa		4.87	□□□□□ -1.63
RIF1-212	ENST00000498041	GGT7	Q9UJ14	662 aa		4.87	□□□□□ -1.63

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